BLASTX nr result
ID: Cocculus23_contig00034326
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00034326
(302 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002526000.1| cleavage and polyadenylation specificity fac... 73 5e-11
ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261... 72 8e-11
emb|CAN61405.1| hypothetical protein VITISV_014259 [Vitis vinifera] 71 1e-10
ref|XP_006469322.1| PREDICTED: cleavage and polyadenylation spec... 68 1e-09
ref|XP_006448159.1| hypothetical protein CICLE_v10014563mg [Citr... 68 1e-09
ref|XP_007225129.1| hypothetical protein PRUPE_ppa002557mg [Prun... 68 2e-09
gb|EXC54202.1| hypothetical protein L484_001390 [Morus notabilis] 66 4e-09
ref|XP_004298504.1| PREDICTED: cleavage and polyadenylation spec... 65 1e-08
emb|CBI26829.3| unnamed protein product [Vitis vinifera] 64 2e-08
ref|XP_007045271.1| Cleavage and polyadenylation specificity fac... 64 3e-08
ref|NP_178282.2| cleavage and polyadenylation specificity factor... 63 4e-08
gb|AAN87883.1| FEG protein [Arabidopsis thaliana] 63 4e-08
gb|AAD12712.1| putative cleavage and polyadenylation specifity f... 63 4e-08
ref|XP_006378435.1| hypothetical protein POPTR_0010s11650g [Popu... 62 8e-08
ref|XP_006378434.1| hypothetical protein POPTR_0010s11650g [Popu... 62 8e-08
ref|XP_002314781.2| metallo-beta-lactamase family protein [Popul... 62 8e-08
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec... 62 1e-07
gb|AAS80153.1| ACT11D09.9 [Cucumis melo] 62 1e-07
ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and... 61 1e-07
ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arab... 61 2e-07
>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis] gi|223534732|gb|EEF36424.1| cleavage and
polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 72.8 bits (177), Expect = 5e-11
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Frame = -2
Query: 301 NASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLEN 122
NA+ D +VAEGILV++K K+A+ VHQDELL +LGA +H + FA+CCPV + ++
Sbjct: 488 NATSRLEVSDERVAEGILVVEKNKKARVVHQDELLLMLGAKQHEVQFAYCCPVQVDNMDQ 547
Query: 121 TQ--PHKITTELL 89
T+ P ELL
Sbjct: 548 TRRDPSSTHDELL 560
>ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 72.0 bits (175), Expect = 8e-11
Identities = 30/61 (49%), Positives = 47/61 (77%)
Frame = -2
Query: 298 ASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENT 119
A+ + + D +VAEGIL+++K+K+AK VHQ+ELL ++G D+H + FA+CCPV + LE T
Sbjct: 1738 ATSVLQVHDERVAEGILIVEKSKKAKVVHQNELLLMIGKDKHDVQFAYCCPVQIGNLERT 1797
Query: 118 Q 116
+
Sbjct: 1798 K 1798
>emb|CAN61405.1| hypothetical protein VITISV_014259 [Vitis vinifera]
Length = 328
Score = 71.2 bits (173), Expect = 1e-10
Identities = 30/61 (49%), Positives = 46/61 (75%)
Frame = -2
Query: 298 ASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENT 119
A+ + D +VAEGIL+++K+K+AK VHQ+ELL ++G D+H + FA+CCPV + LE T
Sbjct: 168 ATSXLQVHDERVAEGILIVEKSKKAKVVHQNELLLMIGKDKHDVQFAYCCPVQIGNLERT 227
Query: 118 Q 116
+
Sbjct: 228 K 228
>ref|XP_006469322.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Citrus sinensis]
Length = 1019
Score = 68.2 bits (165), Expect = 1e-09
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Frame = -2
Query: 277 EDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENTQPHKITT 98
+D +VAEGILV++K+++AK VHQDELL +LG H + FA+CCPV++ LE K TT
Sbjct: 491 KDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELE-----KFTT 545
Query: 97 ELL--NSAPLEEPSVAPLL 47
L + L +P+ + L+
Sbjct: 546 TSLTPTARMLRDPNKSSLI 564
>ref|XP_006448159.1| hypothetical protein CICLE_v10014563mg [Citrus clementina]
gi|557550770|gb|ESR61399.1| hypothetical protein
CICLE_v10014563mg [Citrus clementina]
Length = 646
Score = 68.2 bits (165), Expect = 1e-09
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Frame = -2
Query: 277 EDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENTQPHKITT 98
+D +VAEGILV++K+++AK VHQDELL +LG H + FA+CCPV++ LE K TT
Sbjct: 491 KDERVAEGILVLEKSEKAKVVHQDELLLMLGEKRHEVQFAYCCPVNVDELE-----KFTT 545
Query: 97 ELL--NSAPLEEPSVAPLL 47
L + L +P+ + L+
Sbjct: 546 TSLTPTARMLRDPNKSSLI 564
>ref|XP_007225129.1| hypothetical protein PRUPE_ppa002557mg [Prunus persica]
gi|462422065|gb|EMJ26328.1| hypothetical protein
PRUPE_ppa002557mg [Prunus persica]
Length = 658
Score = 67.8 bits (164), Expect = 2e-09
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENTQ 116
R D +VAEG+LVM++ K+AK VHQDELL +LG +H + FA+CCP + L T+
Sbjct: 497 RVSDERVAEGVLVMERNKKAKVVHQDELLLMLGEKKHQVQFAYCCPADIGHLGETK 552
>gb|EXC54202.1| hypothetical protein L484_001390 [Morus notabilis]
Length = 244
Score = 66.2 bits (160), Expect = 4e-09
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = -2
Query: 301 NASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLEN 122
N + + D +VAEGI VM+K K+AK VHQDELL +LG +H++ A+CCP+ + E+
Sbjct: 69 NLMLCLQVTDERVAEGIFVMEKGKKAKVVHQDELLLMLGEKQHIVQHAYCCPIHVKNSES 128
Query: 121 TQPHKITTELL 89
H + +L
Sbjct: 129 AD-HTLVNNVL 138
>ref|XP_004298504.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Fragaria vesca subsp. vesca]
Length = 1009
Score = 65.1 bits (157), Expect = 1e-08
Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSL-SGLENT 119
R D +VAEGILVM+K K+AK VHQDEL +LG +H + FA+CCP + + ENT
Sbjct: 487 RVSDDRVAEGILVMEKNKKAKVVHQDELPLMLGEKKHQVKFAYCCPAHIGNSQENT 542
>emb|CBI26829.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 63.9 bits (154), Expect = 2e-08
Identities = 26/51 (50%), Positives = 41/51 (80%)
Frame = -2
Query: 298 ASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCP 146
A+ + + D +VAEGIL+++K+K+AK VHQ+ELL ++G D+H + FA+CCP
Sbjct: 544 ATSVLQVHDERVAEGILIVEKSKKAKVVHQNELLLMIGKDKHDVQFAYCCP 594
>ref|XP_007045271.1| Cleavage and polyadenylation specificity factor 73 kDa subunit-II
[Theobroma cacao] gi|508709206|gb|EOY01103.1| Cleavage
and polyadenylation specificity factor 73 kDa subunit-II
[Theobroma cacao]
Length = 657
Score = 63.5 bits (153), Expect = 3e-08
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENTQ 116
+ D +VAEGILV++K K+AK +HQDELL +LG ++H + FA+C P+ LE T+
Sbjct: 493 QVSDERVAEGILVVEKGKKAKVIHQDELLHMLGENKHEVQFAYCFPMRTERLEKTR 548
>ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName:
Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and
polyadenylation specifity factor [Arabidopsis thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation
specificity factor subunit 3-II [Arabidopsis thaliana]
Length = 613
Score = 63.2 bits (152), Expect = 4e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = -2
Query: 301 NASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSG 131
N++ LR T D + A+G+LV++K+K+AK VHQDE+ +L HV+ AHCCPV + G
Sbjct: 473 NSTQLRVT-DHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKG 528
>gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 63.2 bits (152), Expect = 4e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = -2
Query: 301 NASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSG 131
N++ LR T D + A+G+LV++K+K+AK VHQDE+ +L HV+ AHCCPV + G
Sbjct: 473 NSTQLRVT-DHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKG 528
>gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 63.2 bits (152), Expect = 4e-08
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = -2
Query: 301 NASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSG 131
N++ LR T D + A+G+LV++K+K+AK VHQDE+ +L HV+ AHCCPV + G
Sbjct: 473 NSTQLRVT-DHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKG 528
>ref|XP_006378435.1| hypothetical protein POPTR_0010s11650g [Populus trichocarpa]
gi|550329588|gb|ERP56232.1| hypothetical protein
POPTR_0010s11650g [Populus trichocarpa]
Length = 368
Score = 62.0 bits (149), Expect = 8e-08
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENTQ 116
+ D +VAEGIL+M+K K+A+ VHQD+LL +L +H + FA+CC L LE T+
Sbjct: 237 QVNDERVAEGILIMEKGKKARVVHQDDLLLMLRQKKHDVQFAYCCAAQLDNLEETR 292
>ref|XP_006378434.1| hypothetical protein POPTR_0010s11650g [Populus trichocarpa]
gi|550329587|gb|ERP56231.1| hypothetical protein
POPTR_0010s11650g [Populus trichocarpa]
Length = 464
Score = 62.0 bits (149), Expect = 8e-08
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENTQ 116
+ D +VAEGIL+M+K K+A+ VHQD+LL +L +H + FA+CC L LE T+
Sbjct: 333 QVNDERVAEGILIMEKGKKARVVHQDDLLLMLRQKKHDVQFAYCCAAQLDNLEETR 388
>ref|XP_002314781.2| metallo-beta-lactamase family protein [Populus trichocarpa]
gi|550329586|gb|EEF00952.2| metallo-beta-lactamase
family protein [Populus trichocarpa]
Length = 625
Score = 62.0 bits (149), Expect = 8e-08
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLENTQ 116
+ D +VAEGIL+M+K K+A+ VHQD+LL +L +H + FA+CC L LE T+
Sbjct: 494 QVNDERVAEGILIMEKGKKARVVHQDDLLLMLRQKKHDVQFAYCCAAQLDNLEETR 549
>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLE 125
+ D +V EGILVM+ K+ KA+HQDELL LLG EH + FAHC P+ L+
Sbjct: 499 QVSDDRVNEGILVMENGKKTKALHQDELLLLLGQQEHEVRFAHCRPIYFGSLD 551
>gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLE 125
+ D +V EGILVM+ K+ KA+HQDELL LLG EH + FAHC P+ L+
Sbjct: 558 QVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLD 610
>ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II-like, partial [Cucumis
sativus]
Length = 472
Score = 61.2 bits (147), Expect = 1e-07
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = -2
Query: 283 RTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSGLE 125
+ D +V EGILVM+ K+ KA+HQDELL LLG EH + FAHC P+ L+
Sbjct: 322 QVSDDRVNEGILVMENGKKXKALHQDELLLLLGQQEHEVRFAHCRPIYFGSLD 374
>ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata] gi|297320925|gb|EFH51346.1| hypothetical protein
ARALYDRAFT_322516 [Arabidopsis lyrata subsp. lyrata]
Length = 819
Score = 60.8 bits (146), Expect = 2e-07
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = -2
Query: 301 NASMLRRTEDSKVAEGILVMDKTKRAKAVHQDELLPLLGADEHVIGFAHCCPVSLSG 131
N++ LR T D + A+G+LV++K+K+AK VHQDE+ +L HV+ A+CCPV + G
Sbjct: 473 NSTQLRVT-DQRTADGVLVIEKSKKAKIVHQDEVSEVLHEKNHVVSLAYCCPVKVKG 528