BLASTX nr result
ID: Cocculus23_contig00030801
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00030801
(327 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324341.2| RNA recognition motif-containing family prot... 78 1e-12
ref|XP_004509622.1| PREDICTED: U2 snRNP-associated SURP motif-co... 78 1e-12
ref|XP_004138695.1| PREDICTED: U2 snRNP-associated SURP motif-co... 78 1e-12
ref|XP_003628951.1| U2-associated protein SR140 [Medicago trunca... 78 1e-12
emb|CBI21155.3| unnamed protein product [Vitis vinifera] 78 1e-12
ref|XP_002308714.1| RNA recognition motif-containing family prot... 78 1e-12
ref|XP_002515412.1| RNA binding protein, putative [Ricinus commu... 77 3e-12
ref|XP_006450262.1| hypothetical protein CICLE_v10007357mg [Citr... 76 4e-12
gb|EXC01118.1| U2 snRNP-associated SURP motif-containing protein... 75 1e-11
ref|XP_006599196.1| PREDICTED: U2 snRNP-associated SURP motif-co... 75 1e-11
ref|XP_006585860.1| PREDICTED: U2 snRNP-associated SURP motif-co... 75 1e-11
ref|XP_007156301.1| hypothetical protein PHAVU_003G2751001g, par... 75 1e-11
ref|XP_007011691.1| RNA recognition motif-containing protein iso... 74 2e-11
ref|XP_007225360.1| hypothetical protein PRUPE_ppa000894mg [Prun... 74 2e-11
ref|XP_004291970.1| PREDICTED: U2 snRNP-associated SURP motif-co... 72 8e-11
ref|XP_006394752.1| hypothetical protein EUTSA_v10003609mg [Eutr... 70 2e-10
ref|XP_006394750.1| hypothetical protein EUTSA_v10003609mg [Eutr... 70 2e-10
ref|XP_002874237.1| RNA recognition motif-containing protein [Ar... 70 2e-10
ref|NP_568464.1| RNA recognition motif-containing protein RRC1 [... 70 2e-10
ref|XP_001775751.1| predicted protein [Physcomitrella patens] gi... 67 3e-09
>ref|XP_002324341.2| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|550317898|gb|EEF02906.2| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 969
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GDN PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEARKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGG 57
>ref|XP_004509622.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like
isoform X1 [Cicer arietinum]
gi|502154215|ref|XP_004509623.1| PREDICTED: U2
snRNP-associated SURP motif-containing protein-like
isoform X2 [Cicer arietinum]
gi|502154218|ref|XP_004509624.1| PREDICTED: U2
snRNP-associated SURP motif-containing protein-like
isoform X3 [Cicer arietinum]
Length = 977
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GDN PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGG 57
>ref|XP_004138695.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like
[Cucumis sativus] gi|449493301|ref|XP_004159248.1|
PREDICTED: U2 snRNP-associated SURP motif-containing
protein-like [Cucumis sativus]
Length = 961
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GDN PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGG 57
>ref|XP_003628951.1| U2-associated protein SR140 [Medicago truncatula]
gi|355522973|gb|AET03427.1| U2-associated protein SR140
[Medicago truncatula]
Length = 1139
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GDN PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGG 57
>emb|CBI21155.3| unnamed protein product [Vitis vinifera]
Length = 941
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GDN PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGG 57
>ref|XP_002308714.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222854690|gb|EEE92237.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 988
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/57 (64%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GDN PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGG 57
>ref|XP_002515412.1| RNA binding protein, putative [Ricinus communis]
gi|223545356|gb|EEF46861.1| RNA binding protein,
putative [Ricinus communis]
Length = 979
Score = 77.0 bits (188), Expect = 3e-12
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ DETARLY EFVESF+GDN PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKREDDETARLYAEFVESFQGDNAPGSKTFVRGG 57
>ref|XP_006450262.1| hypothetical protein CICLE_v10007357mg [Citrus clementina]
gi|567916514|ref|XP_006450263.1| hypothetical protein
CICLE_v10007357mg [Citrus clementina]
gi|557553488|gb|ESR63502.1| hypothetical protein
CICLE_v10007357mg [Citrus clementina]
gi|557553489|gb|ESR63503.1| hypothetical protein
CICLE_v10007357mg [Citrus clementina]
Length = 973
Score = 76.3 bits (186), Expect = 4e-12
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GD+GPG+K FVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSGPGSKAFVRGG 57
>gb|EXC01118.1| U2 snRNP-associated SURP motif-containing protein [Morus notabilis]
Length = 999
Score = 75.1 bits (183), Expect = 1e-11
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GD+ PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKTFVRGG 57
>ref|XP_006599196.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like
[Glycine max]
Length = 969
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GD PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGG 57
>ref|XP_006585860.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like
isoform X1 [Glycine max]
gi|571473234|ref|XP_006585861.1| PREDICTED: U2
snRNP-associated SURP motif-containing protein-like
isoform X2 [Glycine max]
Length = 969
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GD PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGG 57
>ref|XP_007156301.1| hypothetical protein PHAVU_003G2751001g, partial [Phaseolus
vulgaris] gi|593786523|ref|XP_007156302.1| hypothetical
protein PHAVU_003G2751001g, partial [Phaseolus vulgaris]
gi|561029655|gb|ESW28295.1| hypothetical protein
PHAVU_003G2751001g, partial [Phaseolus vulgaris]
gi|561029656|gb|ESW28296.1| hypothetical protein
PHAVU_003G2751001g, partial [Phaseolus vulgaris]
Length = 157
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+GD PG+KTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGG 57
>ref|XP_007011691.1| RNA recognition motif-containing protein isoform 1 [Theobroma
cacao] gi|508782054|gb|EOY29310.1| RNA recognition
motif-containing protein isoform 1 [Theobroma cacao]
Length = 985
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/57 (61%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLYEEFV SF+G+N PG+K FVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYEEFVASFQGENAPGSKAFVRGG 57
>ref|XP_007225360.1| hypothetical protein PRUPE_ppa000894mg [Prunus persica]
gi|462422296|gb|EMJ26559.1| hypothetical protein
PRUPE_ppa000894mg [Prunus persica]
Length = 968
Score = 73.9 bits (180), Expect = 2e-11
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ ++ETARLY+EFV+SF+GDN PG+K FVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEEETARLYKEFVDSFQGDNAPGSKAFVRGG 57
>ref|XP_004291970.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like
[Fragaria vesca subsp. vesca]
Length = 980
Score = 72.0 bits (175), Expect = 8e-11
Identities = 34/57 (59%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY EFVESF+G+N G++TFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGENAAGSRTFVRGG 57
>ref|XP_006394752.1| hypothetical protein EUTSA_v10003609mg [Eutrema salsugineum]
gi|557091391|gb|ESQ32038.1| hypothetical protein
EUTSA_v10003609mg [Eutrema salsugineum]
Length = 799
Score = 70.5 bits (171), Expect = 2e-10
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY+EFVESF+GDN TKTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGDN--STKTFVRGG 55
>ref|XP_006394750.1| hypothetical protein EUTSA_v10003609mg [Eutrema salsugineum]
gi|567139324|ref|XP_006394751.1| hypothetical protein
EUTSA_v10003609mg [Eutrema salsugineum]
gi|557091389|gb|ESQ32036.1| hypothetical protein
EUTSA_v10003609mg [Eutrema salsugineum]
gi|557091390|gb|ESQ32037.1| hypothetical protein
EUTSA_v10003609mg [Eutrema salsugineum]
Length = 944
Score = 70.5 bits (171), Expect = 2e-10
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY+EFVESF+GDN TKTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGDN--STKTFVRGG 55
>ref|XP_002874237.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata] gi|297320074|gb|EFH50496.1| RNA recognition
motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 948
Score = 70.5 bits (171), Expect = 2e-10
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY+EFVESF+GDN TKTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGDNAT-TKTFVRGG 56
>ref|NP_568464.1| RNA recognition motif-containing protein RRC1 [Arabidopsis
thaliana] gi|13430600|gb|AAK25922.1|AF360212_1 unknown
protein [Arabidopsis thaliana]
gi|14532872|gb|AAK64118.1| unknown protein [Arabidopsis
thaliana] gi|332006012|gb|AED93395.1| RNA recognition
motif-containing protein RRC1 [Arabidopsis thaliana]
Length = 946
Score = 70.5 bits (171), Expect = 2e-10
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M+SFS+TRKKTPFQ +DETARLY+EFVESF+GDN TKTFVRGG
Sbjct: 1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGDNAT-TKTFVRGG 56
>ref|XP_001775751.1| predicted protein [Physcomitrella patens]
gi|162672903|gb|EDQ59434.1| predicted protein
[Physcomitrella patens]
Length = 990
Score = 67.0 bits (162), Expect = 3e-09
Identities = 33/57 (57%), Positives = 36/57 (63%)
Frame = +2
Query: 155 MTSFSVTRKKTPFQXXXXXXXXXXXXXQDETARLYEEFVESFKGDNGPGTKTFVRGG 325
M +FSV RKKTPFQ +E ARLYEEFVESFK D+ PG K FVRGG
Sbjct: 1 MAAFSVVRKKTPFQKHREEEDAKKRRADEEAARLYEEFVESFKADDAPGGKAFVRGG 57