BLASTX nr result
ID: Cocculus23_contig00030439
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00030439
(504 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002300621.1| RNA recognition motif-containing family prot... 73 5e-11
gb|EXB56267.1| RNA-binding protein 24 [Morus notabilis] 71 1e-10
ref|XP_004146763.1| PREDICTED: RNA-binding protein Musashi homol... 70 3e-10
ref|XP_006473857.1| PREDICTED: RNA-binding protein 24-B-like iso... 70 4e-10
ref|XP_006435451.1| hypothetical protein CICLE_v10003364mg [Citr... 70 4e-10
ref|XP_006849958.1| hypothetical protein AMTR_s00022p00143970 [A... 69 5e-10
ref|XP_002273353.2| PREDICTED: uncharacterized protein LOC100258... 68 1e-09
ref|XP_002510728.1| RNA binding protein, putative [Ricinus commu... 67 2e-09
ref|XP_006342180.1| PREDICTED: RNA-binding protein 24-B-like [So... 66 6e-09
ref|XP_007209452.1| hypothetical protein PRUPE_ppa009716mg [Prun... 66 6e-09
ref|XP_007202445.1| hypothetical protein PRUPE_ppa009964mg [Prun... 66 6e-09
gb|EYU36596.1| hypothetical protein MIMGU_mgv1a011104mg [Mimulus... 65 1e-08
ref|XP_004238460.1| PREDICTED: uncharacterized protein LOC101268... 64 2e-08
gb|AAF16655.1|AC012394_4 putative RNA-binding protein; 16955-184... 64 2e-08
ref|NP_565132.2| RNA recognition motif-containing protein [Arabi... 64 2e-08
gb|AAK52999.1|AF375415_1 F15M4.4/F15M4.4 [Arabidopsis thaliana] ... 64 2e-08
ref|XP_002307819.1| RNA recognition motif-containing family prot... 63 4e-08
ref|XP_007018664.1| RNA-binding (RRM/RBD/RNP motifs) family prot... 62 6e-08
ref|XP_007018663.1| RNA-binding family protein isoform 1 [Theobr... 62 6e-08
ref|XP_006302646.1| hypothetical protein CARUB_v10020749mg [Caps... 62 1e-07
>ref|XP_002300621.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222842347|gb|EEE79894.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 287
Score = 72.8 bits (177), Expect = 5e-11
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY + GYA+PGHH++Q GGP VN +T +P+PT+QAPYPTG
Sbjct: 215 HGYTTMQGYAVPGHHIMQFGGPGVNAMTTSPLPTIQAPYPTG 256
>gb|EXB56267.1| RNA-binding protein 24 [Morus notabilis]
Length = 286
Score = 71.2 bits (173), Expect = 1e-10
Identities = 27/41 (65%), Positives = 36/41 (87%)
Frame = -1
Query: 501 GYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
GY A+HGYAMPGH ++Q GGP+VN +T +P+PT+Q+PYPTG
Sbjct: 216 GYTAMHGYAMPGHQIVQFGGPSVNALTTSPMPTIQSPYPTG 256
>ref|XP_004146763.1| PREDICTED: RNA-binding protein Musashi homolog 2-like [Cucumis
sativus] gi|449531145|ref|XP_004172548.1| PREDICTED:
RNA-binding protein Musashi homolog 2-like [Cucumis
sativus]
Length = 286
Score = 70.1 bits (170), Expect = 3e-10
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY AVHGYAMP +LQ GPNVN +T++P+PT+QAPYP+G
Sbjct: 215 HGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSG 256
>ref|XP_006473857.1| PREDICTED: RNA-binding protein 24-B-like isoform X1 [Citrus
sinensis]
Length = 281
Score = 69.7 bits (169), Expect = 4e-10
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
H Y V GY MPGH ++Q GGPN+N +T +P+PT+QAPYPTG
Sbjct: 211 HAYTPVQGYGMPGHQIMQFGGPNLNAITTSPLPTVQAPYPTG 252
>ref|XP_006435451.1| hypothetical protein CICLE_v10003364mg [Citrus clementina]
gi|557537573|gb|ESR48691.1| hypothetical protein
CICLE_v10003364mg [Citrus clementina]
Length = 268
Score = 69.7 bits (169), Expect = 4e-10
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
H Y V GY MPGH ++Q GGPN+N +T +P+PT+QAPYPTG
Sbjct: 198 HAYTPVQGYGMPGHQIMQFGGPNLNAITTSPLPTVQAPYPTG 239
>ref|XP_006849958.1| hypothetical protein AMTR_s00022p00143970 [Amborella trichopoda]
gi|548853556|gb|ERN11539.1| hypothetical protein
AMTR_s00022p00143970 [Amborella trichopoda]
Length = 296
Score = 69.3 bits (168), Expect = 5e-10
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGYAA+ GYA+P HH++Q GPNVN TA P+P++QAP+P+G
Sbjct: 223 HGYAALQGYAVPSHHIMQFSGPNVNGATATPLPSIQAPFPSG 264
>ref|XP_002273353.2| PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera]
Length = 346
Score = 68.2 bits (165), Expect = 1e-09
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY V GYAMPGH +Q GG +VN ++ +PIPT+QAPYPTG
Sbjct: 213 HGYTTVQGYAMPGHQFMQFGGSSVNAISTSPIPTIQAPYPTG 254
>ref|XP_002510728.1| RNA binding protein, putative [Ricinus communis]
gi|223551429|gb|EEF52915.1| RNA binding protein,
putative [Ricinus communis]
Length = 325
Score = 67.4 bits (163), Expect = 2e-09
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY AV G+AMPGH ++Q GP+VN +T +P+PT+QAPY TG
Sbjct: 187 HGYTAVQGFAMPGHQIVQFSGPSVNAITTSPMPTIQAPYATG 228
>ref|XP_006342180.1| PREDICTED: RNA-binding protein 24-B-like [Solanum tuberosum]
Length = 287
Score = 65.9 bits (159), Expect = 6e-09
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
H Y + GYAMPGH +LQ GGP VN +TA+ IPT+QAPY TG
Sbjct: 215 HSYTTLQGYAMPGHQILQFGGPGVNAMTASSIPTIQAPYQTG 256
>ref|XP_007209452.1| hypothetical protein PRUPE_ppa009716mg [Prunus persica]
gi|462405187|gb|EMJ10651.1| hypothetical protein
PRUPE_ppa009716mg [Prunus persica]
Length = 281
Score = 65.9 bits (159), Expect = 6e-09
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -1
Query: 501 GYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTGKYLSL 364
GY VHGYAMP ++Q GGP+VN VT P+P +QAPYPTG S+
Sbjct: 212 GYPTVHGYAMPAQQIVQFGGPSVNAVTTTPVPPVQAPYPTGMVASV 257
>ref|XP_007202445.1| hypothetical protein PRUPE_ppa009964mg [Prunus persica]
gi|462397976|gb|EMJ03644.1| hypothetical protein
PRUPE_ppa009964mg [Prunus persica]
Length = 270
Score = 65.9 bits (159), Expect = 6e-09
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTGKYLSLV 361
HGYAAV Y +PGHH++Q GG NV+ + A IPT+Q PYPTG +L+
Sbjct: 221 HGYAAVQSYGVPGHHIMQFGGSNVSGASPASIPTIQTPYPTGNTKTLL 268
>gb|EYU36596.1| hypothetical protein MIMGU_mgv1a011104mg [Mimulus guttatus]
Length = 292
Score = 65.1 bits (157), Expect = 1e-08
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
H Y AV GYAMPGH ++Q GGP VN +T A +PT+ PYPTG
Sbjct: 220 HNYTAVPGYAMPGHQIVQFGGPTVNAMTTASVPTIPVPYPTG 261
>ref|XP_004238460.1| PREDICTED: uncharacterized protein LOC101268392 [Solanum
lycopersicum]
Length = 287
Score = 64.3 bits (155), Expect = 2e-08
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
H Y + GYA+PGH +LQ GGP VN +TA+ IPT+QAPY TG
Sbjct: 215 HSYTTLQGYAVPGHQILQFGGPGVNAMTASSIPTIQAPYQTG 256
>gb|AAF16655.1|AC012394_4 putative RNA-binding protein; 16955-18423 [Arabidopsis thaliana]
gi|12323977|gb|AAG51948.1|AC015450_9 putative
RNA-binding protein; 24808-23340 [Arabidopsis thaliana]
Length = 279
Score = 64.3 bits (155), Expect = 2e-08
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY AV GY++PG H+LQ+GGP V+ +T + +P LQAPYP+G
Sbjct: 209 HGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPYPSG 250
>ref|NP_565132.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332197724|gb|AEE35845.1| RNA recognition
motif-containing protein [Arabidopsis thaliana]
Length = 285
Score = 64.3 bits (155), Expect = 2e-08
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY AV GY++PG H+LQ+GGP V+ +T + +P LQAPYP+G
Sbjct: 213 HGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPYPSG 254
>gb|AAK52999.1|AF375415_1 F15M4.4/F15M4.4 [Arabidopsis thaliana] gi|23308243|gb|AAN18091.1|
At1g76460/F15M4.4 [Arabidopsis thaliana]
gi|227206448|dbj|BAH57279.1| AT1G76460 [Arabidopsis
thaliana]
Length = 170
Score = 64.3 bits (155), Expect = 2e-08
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY AV GY++PG H+LQ+GGP V+ +T + +P LQAPYP+G
Sbjct: 98 HGYTAVQGYSVPGSHILQLGGPTVSTMTTSSMPALQAPYPSG 139
>ref|XP_002307819.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222857268|gb|EEE94815.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 286
Score = 63.2 bits (152), Expect = 4e-08
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY ++ GYA+PGH ++Q GGP+VN +T + +PT+QAPY TG
Sbjct: 214 HGYTSMPGYAVPGHQIVQFGGPSVNAITTSSMPTIQAPYHTG 255
>ref|XP_007018664.1| RNA-binding (RRM/RBD/RNP motifs) family protein isoform 2
[Theobroma cacao] gi|508723992|gb|EOY15889.1|
RNA-binding (RRM/RBD/RNP motifs) family protein isoform
2 [Theobroma cacao]
Length = 284
Score = 62.4 bits (150), Expect = 6e-08
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY+AV GYA+P H ++Q GGP+ N +T + +PT+Q PYP G
Sbjct: 213 HGYSAVQGYALPSHQIVQFGGPSANAITTSAMPTIQTPYPGG 254
>ref|XP_007018663.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508723991|gb|EOY15888.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 319
Score = 62.4 bits (150), Expect = 6e-08
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY+AV GYA+P H ++Q GGP+ N +T + +PT+Q PYP G
Sbjct: 248 HGYSAVQGYALPSHQIVQFGGPSANAITTSAMPTIQTPYPGG 289
>ref|XP_006302646.1| hypothetical protein CARUB_v10020749mg [Capsella rubella]
gi|482571356|gb|EOA35544.1| hypothetical protein
CARUB_v10020749mg [Capsella rubella]
Length = 285
Score = 61.6 bits (148), Expect = 1e-07
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = -1
Query: 504 HGYAAVHGYAMPGHHVLQVGGPNVNEVTAAPIPTLQAPYPTG 379
HGY AV GY++PG HVLQ+GGP V+ +T + + LQAPYP+G
Sbjct: 213 HGYTAVQGYSVPGSHVLQLGGPTVSAMTTSSMSALQAPYPSG 254