BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00029978
         (895 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat...   332   1e-88
emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]   328   2e-87
ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat...   309   1e-81
ref|XP_007210971.1| hypothetical protein PRUPE_ppa022285mg [Prun...   308   2e-81
gb|EYU29538.1| hypothetical protein MIMGU_mgv1a024126mg [Mimulus...   306   9e-81
ref|XP_004301070.1| PREDICTED: putative pentatricopeptide repeat...   297   3e-78
gb|EXB52180.1| hypothetical protein L484_004281 [Morus notabilis]     291   2e-76
ref|XP_006442445.1| hypothetical protein CICLE_v10020178mg [Citr...   290   4e-76
ref|XP_006858710.1| hypothetical protein AMTR_s00066p00107660 [A...   289   1e-75
gb|AHB18412.1| pentatricopeptide repeat-containing protein [Goss...   288   3e-75
ref|XP_002317451.1| pentatricopeptide repeat-containing family p...   286   1e-74
ref|XP_006358934.1| PREDICTED: putative pentatricopeptide repeat...   285   2e-74
ref|XP_006477884.1| PREDICTED: putative pentatricopeptide repeat...   285   2e-74
ref|XP_007021815.1| Pentatricopeptide repeat (PPR) superfamily p...   276   1e-71
ref|XP_007021816.1| Pentatricopeptide repeat (PPR) superfamily p...   275   1e-71
ref|XP_004252119.1| PREDICTED: putative pentatricopeptide repeat...   273   5e-71
ref|XP_002891745.1| pentatricopeptide repeat-containing protein ...   273   9e-71
ref|NP_175740.1| pentatricopeptide repeat-containing protein [Ar...   271   3e-70
ref|XP_007021814.1| Pentatricopeptide repeat (PPR) superfamily p...   270   4e-70
ref|XP_006307423.1| hypothetical protein CARUB_v10009047mg [Caps...   268   3e-69

>ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score =  332 bits (851), Expect = 1e-88
 Identities = 169/276 (61%), Positives = 209/276 (75%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSAKPFRHSLLSYDLIISKLGRAK 649
           M   K +SPFRLSSLLRL+ DP  ALQLF+NPNP+    KPFR++ LSYDLII+KLGR++
Sbjct: 1   MNPPKPISPFRLSSLLRLQNDPKLALQLFQNPNPD---PKPFRYTHLSYDLIITKLGRSR 57

Query: 648 MFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSL 469
           MF +MEQIL Q++ ETRFSPKEIIFC+VI FYGRARL ++A++TFE IP FRC+RTV+SL
Sbjct: 58  MFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTVKSL 117

Query: 468 NTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRNR 289
           N+LLNALL C E +K   I   ID++A+PDVCTYNVLINA C +  L DAWN+FDEM  +
Sbjct: 118 NSLLNALLKCKEFEKFDGILSGIDKFATPDVCTYNVLINACCSSGSLGDAWNVFDEMLRK 177

Query: 288 GIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLGS 109
            + PN V+F TL+S LC  SR+DEA RLKEDMVK+F+VK N F+Y SL+KGLC+VN+L  
Sbjct: 178 HVCPNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSL 237

Query: 108 AXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           A               D  IY+TLI+ALFK G+K E
Sbjct: 238 AFELKKEMVANKLR-LDSGIYSTLIAALFKVGRKDE 272



 Score = 61.2 bits (147), Expect = 5e-07
 Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 1/167 (0%)
 Frame = -2

Query: 684 YDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERI 505
           Y  +I+ L +    D++  +L++M+ E    P  + +  +I  +   +  E A    E +
Sbjct: 257 YSTLIAALFKVGRKDEVFVVLEEMR-ENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEM 315

Query: 504 PSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDIDRYA-SPDVCTYNVLINAACRNDLL 328
            +  C+  V S N +++ L   G+ ++  ++  D+ R   +PDV +Y +L +  C     
Sbjct: 316 VAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQF 375

Query: 327 NDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVK 187
           N+A  + DEM  +G  P   S    V ALC +  ++   ++   +VK
Sbjct: 376 NEAAFILDEMVFKGYAPKSASKTKFVEALCQEGNLELLCKVLNSLVK 422



 Score = 57.0 bits (136), Expect = 1e-05
 Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 1/198 (0%)
 Frame = -2

Query: 696 SLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRT 517
           +++++  +IS L      D+  ++ + M       P   ++  +++   R      A   
Sbjct: 182 NVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFEL 241

Query: 516 FERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACR 340
            + + + +        +TL+ AL   G   ++  +  ++ +    PD  TYN +I+  C 
Sbjct: 242 KKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCN 301

Query: 339 NDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVF 160
                 A+ + +EM  +G  P+ +S+  ++S LC + +  EA  L EDM +      +V 
Sbjct: 302 EKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPR-RGCTPDVG 360

Query: 159 LYTSLIKGLCKVNQLGSA 106
            Y  L  GLC+  Q   A
Sbjct: 361 SYRILFDGLCEGMQFNEA 378


>emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
          Length = 418

 Score =  328 bits (840), Expect = 2e-87
 Identities = 167/276 (60%), Positives = 209/276 (75%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSAKPFRHSLLSYDLIISKLGRAK 649
           M   K +SPFRLSSLLRL+  P  ALQLF+NPNP+    KPFR++ LSYDLII+KLGR++
Sbjct: 1   MNPPKPISPFRLSSLLRLQNGPKLALQLFQNPNPD---PKPFRYTHLSYDLIITKLGRSR 57

Query: 648 MFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSL 469
           MF +MEQIL Q++ ETRFSPKEIIFC+VI FYGRARL ++A++TFE IP FRC+RTV+SL
Sbjct: 58  MFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQRTVKSL 117

Query: 468 NTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRNR 289
           N+LLNALLNC E +K   I   ID++A+P+VCTYN+LINA C +  L DAWN+FDEM  +
Sbjct: 118 NSLLNALLNCKEFEKFDGILSGIDKFATPNVCTYNILINACCLSGRLGDAWNVFDEMLRK 177

Query: 288 GIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLGS 109
            + PN V+F TL+S LC  SR+DEA RLKEDMVK+F+VK N F+Y SL+KGLC+VN+L  
Sbjct: 178 HVCPNVVTFGTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSL 237

Query: 108 AXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           A               D  IY+TLI+ALFK G+K E
Sbjct: 238 AFELKKEMVANKLR-LDSGIYSTLIAALFKVGRKDE 272



 Score = 60.5 bits (145), Expect = 9e-07
 Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
 Frame = -2

Query: 696 SLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRT 517
           +++++  +IS L R    D+  ++ + M       P   ++  +++   R      A   
Sbjct: 182 NVVTFGTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFEL 241

Query: 516 FERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACR 340
            + + + +        +TL+ AL   G   ++  +  ++ +    PD  TYN +I+  C 
Sbjct: 242 KKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCN 301

Query: 339 NDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVF 160
                 A+ + +EM  +G  P+ +S+  ++S LC + +  EA  L EDM +      +V 
Sbjct: 302 EKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPR-RGCTPDVG 360

Query: 159 LYTSLIKGLCKVNQLGSA 106
            Y  L  GLC+  Q   A
Sbjct: 361 SYRILFDGLCEGMQFNEA 378



 Score = 57.0 bits (136), Expect = 1e-05
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
 Frame = -2

Query: 684 YDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERI 505
           Y  +I+ L +    D++  +L++M+ E    P  + +  +I  +   +  E A    E +
Sbjct: 257 YSTLIAALFKVGRKDEVFVVLEEMR-ENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEM 315

Query: 504 PSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDIDRYA-SPDVCTYNVLINAACRNDLL 328
               C+  V S N +++ L   G+ ++  ++  D+ R   +PDV +Y +L +  C     
Sbjct: 316 VVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQF 375

Query: 327 NDAWNLFDEMRNRGIDPNDVSFATLVSALCA 235
           N+A  + DEM  +G  P   S    V ALC+
Sbjct: 376 NEAAFILDEMVFKGYAPKSASXTKFVEALCS 406


>ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score =  309 bits (791), Expect = 1e-81
 Identities = 158/278 (56%), Positives = 205/278 (73%), Gaps = 1/278 (0%)
 Frame = -2

Query: 831 KMEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSA-KPFRHSLLSYDLIISKLGR 655
           +M+  K +SPFRLSSLLRL+KDP  ALQLF NPNP+ +   KPFR+SLLSYDLIISKLGR
Sbjct: 68  QMKTQKPISPFRLSSLLRLQKDPTLALQLFLNPNPSSSEPPKPFRYSLLSYDLIISKLGR 127

Query: 654 AKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVR 475
           AKMFD+ME+IL Q+K ETRF+P E+IFC+VI FYGRA L ++A + FERIPSFRC+RTV+
Sbjct: 128 AKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTVK 187

Query: 474 SLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMR 295
           S+N+LL ALL   + +K+ ++ +DI  Y SPD CT+N+LI+AAC    L+  W +FDEM+
Sbjct: 188 SVNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQ 247

Query: 294 NRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQL 115
            RG+ PN V+F TL+  L   S++ EALRLKEDMVK++ +K N  +YT+LIKG C V +L
Sbjct: 248 KRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGEL 307

Query: 114 GSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
             A                 A+Y+TLISALFK G+K+E
Sbjct: 308 NFAFKLKEEMVTSNVK-LVSAVYSTLISALFKHGRKEE 344



 Score = 71.2 bits (173), Expect = 5e-10
 Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
 Frame = -2

Query: 468 NTLLNALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           +TL++AL   G  +++ +I  ++ +    PD  TYN +IN  C+ + L  A  + DEM  
Sbjct: 330 STLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVE 389

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           +G  P+  SF T++  LC + ++D+A+ L EDM +      +V  Y  +  GLC++ QL 
Sbjct: 390 KGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPR-RGCPPDVLSYRIIFDGLCEMMQLK 448

Query: 111 SA 106
            A
Sbjct: 449 EA 450



 Score = 57.4 bits (137), Expect = 7e-06
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
 Frame = -2

Query: 684 YDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERI 505
           Y  +IS L +    +++  IL +M  E    P  + +  +I  + +    E A R  + +
Sbjct: 329 YSTLISALFKHGRKEEVSDILREMG-ENGCKPDTVTYNAIINGHCKENDLESAHRVMDEM 387

Query: 504 PSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDIDRYASP-DVCTYNVLINAACRNDLL 328
               C+  V S NT++  L   G+  K  ++  D+ R   P DV +Y ++ +  C    L
Sbjct: 388 VEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQL 447

Query: 327 NDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMD 220
            +A ++ DEM  +G  P + S   LV  LC +  M+
Sbjct: 448 KEATSILDEMIFKGYVPRNESINKLVDRLCQECNME 483


>ref|XP_007210971.1| hypothetical protein PRUPE_ppa022285mg [Prunus persica]
           gi|462406706|gb|EMJ12170.1| hypothetical protein
           PRUPE_ppa022285mg [Prunus persica]
          Length = 462

 Score =  308 bits (789), Expect = 2e-81
 Identities = 153/278 (55%), Positives = 202/278 (72%), Gaps = 2/278 (0%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSA--KPFRHSLLSYDLIISKLGR 655
           M   K +SPFRLSSLLR +KDP  ALQLF+NPN +      +PFR+SLLSYDLII+KLGR
Sbjct: 1   MNASKSISPFRLSSLLRRQKDPILALQLFQNPNSDSTPQLKRPFRYSLLSYDLIITKLGR 60

Query: 654 AKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVR 475
           AKMF QM+QIL Q+K +TRF+P EIIFC+VI FYGRA L ++AL+ F+ IP+FRC RTV+
Sbjct: 61  AKMFHQMDQILHQLKQDTRFAPPEIIFCNVISFYGRAHLPDRALQMFDEIPTFRCHRTVK 120

Query: 474 SLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMR 295
           SLN+LLNALL CGE +K+ +  + ID+YA+PD CTYN+L+ A C N+ L+DAW + DEM 
Sbjct: 121 SLNSLLNALLKCGEFEKMWKFFVGIDKYATPDACTYNILMKACCSNEYLDDAWKVLDEMS 180

Query: 294 NRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQL 115
            +GI PN V+ A+L+  LC+  ++ EA  LKEDM +++ V   +F+YTSL+KGLCK+ ++
Sbjct: 181 RKGIPPNSVTMASLIYCLCSNLKLKEAFTLKEDMARVYGVPPTIFVYTSLMKGLCKIGEM 240

Query: 114 GSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
             A               D A+Y+TLIS LFK G+K E
Sbjct: 241 SLAFRLKEEMIMRKIKP-DAAVYSTLISGLFKLGRKGE 277


>gb|EYU29538.1| hypothetical protein MIMGU_mgv1a024126mg [Mimulus guttatus]
          Length = 474

 Score =  306 bits (783), Expect = 9e-81
 Identities = 159/286 (55%), Positives = 202/286 (70%), Gaps = 10/286 (3%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLF-------RNPNPNLN---SAKPFRHSLLSYD 679
           M+KLKKVSPFRL+SLLRL+KDP  AL LF       +NPNPN N    AKPFR+SLLSYD
Sbjct: 1   MQKLKKVSPFRLNSLLRLQKDPKLALHLFLNPESGAQNPNPNPNPDPKAKPFRYSLLSYD 60

Query: 678 LIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPS 499
           LIISKLGRAKMF QME I+D++K +TR +P+EIIFC++I FYGRARL ++AL+ F+ IP+
Sbjct: 61  LIISKLGRAKMFSQMETIVDKLKHDTRITPEEIIFCNIITFYGRARLPQKALQVFDEIPT 120

Query: 498 FRCERTVRSLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDA 319
           FRC RT+RS+NTLLN LL C E  K+ E+   I++YA+PD CTYN++INA C    L  A
Sbjct: 121 FRCHRTIRSVNTLLNILLRCREFDKMVEVISGIEKYAAPDACTYNIMINACCVMSDLERA 180

Query: 318 WNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIK 139
           W +FDEMR RG++PN V+F TL++ LC  S ++ A  LK+ M   F +K N  +Y +LIK
Sbjct: 181 WYVFDEMRRRGVEPNPVTFGTLINGLCVNSELEMAFGLKKRMEMDFKIKPNARIYVALIK 240

Query: 138 GLCKVNQLGSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           GLCK   L  A               D A+Y+TLISA FK+G+K E
Sbjct: 241 GLCKGGHLSKAIKLKDEMLRKKIE-LDPAVYSTLISASFKAGRKGE 285



 Score = 60.5 bits (145), Expect = 9e-07
 Identities = 37/172 (21%), Positives = 82/172 (47%), Gaps = 1/172 (0%)
 Frame = -2

Query: 618 QMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSLNTLLNALLNC 439
           +M+++ +  P   I+  +I+   +     +A++  + +   + E      +TL++A    
Sbjct: 221 RMEMDFKIKPNARIYVALIKGLCKGGHLSKAIKLKDEMLRKKIELDPAVYSTLISASFKA 280

Query: 438 GEHKKIREIHLDIDRYA-SPDVCTYNVLINAACRNDLLNDAWNLFDEMRNRGIDPNDVSF 262
           G   +      ++ R    PD  TYN +I+  C+ +  + A+    EM   G+ P+ +S+
Sbjct: 281 GRKGEASGFLEEMRRNGCKPDTVTYNAMIHGFCQENEFDSAFAALSEMEKEGLKPDVISY 340

Query: 261 ATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLGSA 106
             ++ ALC + +++EA  L +DM +      +   Y ++++G C + Q   A
Sbjct: 341 NVIIGALCRERKVEEANDLLQDMPR-RKCAPDAVTYRTMLEGFCDLKQFKEA 391


>ref|XP_004301070.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Fragaria vesca subsp. vesca]
          Length = 461

 Score =  297 bits (761), Expect = 3e-78
 Identities = 150/278 (53%), Positives = 202/278 (72%), Gaps = 2/278 (0%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSA--KPFRHSLLSYDLIISKLGR 655
           M+  K +SPFRLSSLLR +KDP  ALQLF+NPNP+ N    KPFR+SL+SYD+IISKLGR
Sbjct: 2   MKASKSISPFRLSSLLRNQKDPALALQLFQNPNPDSNPQPQKPFRYSLISYDIIISKLGR 61

Query: 654 AKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVR 475
           AKMFDQMEQIL QMK +T  SP EIIFC+V+ +YGRARL ++AL  F+ +PSF C+RT++
Sbjct: 62  AKMFDQMEQILGQMKQQTHLSPPEIIFCNVMSYYGRARLPDRALHLFDEMPSFGCQRTIK 121

Query: 474 SLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMR 295
           S N+LL+AL  CG+ +K+RE+   I+ Y +PD CTYN+LI  AC  + L+DA N+FDEMR
Sbjct: 122 SFNSLLDALFKCGKIEKMREVLEGIEDYGTPDACTYNILIK-ACEGEELDDARNVFDEMR 180

Query: 294 NRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQL 115
           ++G++P DV+  TL+  LC+  R+ EAL LKE+  ++  V  N F+Y SL+KGLC + ++
Sbjct: 181 SKGVEPTDVTLVTLIYKLCSVDRVKEALELKEECERVHGVMANAFVYASLMKGLCGIGEM 240

Query: 114 GSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
             A              FD A+Y+TLIS LFK+G++ E
Sbjct: 241 TLAFELKDEMVRKNIR-FDAAVYSTLISVLFKAGRRGE 277


>gb|EXB52180.1| hypothetical protein L484_004281 [Morus notabilis]
          Length = 463

 Score =  291 bits (745), Expect = 2e-76
 Identities = 146/276 (52%), Positives = 199/276 (72%), Gaps = 3/276 (1%)
 Frame = -2

Query: 819 LKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSAKP---FRHSLLSYDLIISKLGRAK 649
           LK +SP+RLS+LLR  KDPN ALQLF+NPNP + S++P   FR+SLLSYD+II+KLGRAK
Sbjct: 4   LKPISPYRLSNLLRRLKDPNLALQLFQNPNPQIQSSEPQKRFRYSLLSYDIIITKLGRAK 63

Query: 648 MFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSL 469
           MFDQMEQIL Q+  E+RF P EIIFC+VI FYGRA L ++AL+ F+ +P FR  RTV+S 
Sbjct: 64  MFDQMEQILRQLNKESRFVPNEIIFCNVISFYGRACLPDRALKLFDEMPFFRVLRTVKSY 123

Query: 468 NTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRNR 289
           N+++++L  CGE +K+ + + +  +  +PDVCTYN+LINA C+   L+DAW +FDEMR  
Sbjct: 124 NSVMDSLSKCGEFEKMMQFYANFRKKVTPDVCTYNILINAWCKRGCLDDAWKVFDEMRWN 183

Query: 288 GIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLGS 109
           G+ PN V+F TLV   CA  ++DEAL+LKEDM++++ +K N  LY SL+K L +  +L  
Sbjct: 184 GVRPNAVTFGTLVHGFCANFKLDEALKLKEDMIRVYGIKPNASLYASLMKELSRAGELSL 243

Query: 108 AXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           A               D  +Y+TLISA FK+G+K+E
Sbjct: 244 AFRLREEMERNRIE-LDARVYSTLISANFKAGRKEE 278



 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 44/205 (21%), Positives = 91/205 (44%), Gaps = 1/205 (0%)
 Frame = -2

Query: 801 FRLSSLLRLEKDPNSALQLFRNPNPNLNSAKPFRHSLLSYDLIISKLGRAKMFDQMEQIL 622
           F+L   L+L++D      +   PN +L            Y  ++ +L RA       ++ 
Sbjct: 203 FKLDEALKLKEDMIRVYGI--KPNASL------------YASLMKELSRAGELSLAFRLR 248

Query: 621 DQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSLNTLLNALLN 442
           ++M+   R      ++  +I    +A   E+A R  E +    C+    + N +++    
Sbjct: 249 EEME-RNRIELDARVYSTLISANFKAGRKEEAFRILEEMKVSGCKPDTVTYNAVIHGFCV 307

Query: 441 CGEHKKIRE-IHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRNRGIDPNDVS 265
             + +   E ++  ++    PD+ TYN++I   C+     +A +LF+++  RG  P+ +S
Sbjct: 308 EKDFEAANEMLNQMVEEGCKPDIITYNIIIGGLCKEGKWVEANDLFEDLPRRGCKPDVLS 367

Query: 264 FATLVSALCAKSRMDEALRLKEDMV 190
           + T+    C   R  EA  + ++MV
Sbjct: 368 YRTIFDGFCGCRRFKEAALILDEMV 392


>ref|XP_006442445.1| hypothetical protein CICLE_v10020178mg [Citrus clementina]
           gi|557544707|gb|ESR55685.1| hypothetical protein
           CICLE_v10020178mg [Citrus clementina]
          Length = 441

 Score =  290 bits (743), Expect = 4e-76
 Identities = 147/281 (52%), Positives = 200/281 (71%), Gaps = 5/281 (1%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSA-----KPFRHSLLSYDLIISK 664
           M K K  SPFRL+SLLRL+KDP  ALQLF+NPNPN N+      KPFR++LL YDLII+K
Sbjct: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60

Query: 663 LGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCER 484
           LGRAKMFD+++QIL Q+K +TR  P+EIIFC+VI FYGRARL E AL+ F+ + SF  +R
Sbjct: 61  LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120

Query: 483 TVRSLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFD 304
           TV+S NTLLNA+L CG+  ++ ++   +++Y SPD C+YN+L++    +  L DAW +FD
Sbjct: 121 TVKSFNTLLNAMLTCGKLDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180

Query: 303 EMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKV 124
           EM  R + P  V+F TL+  LC + R+DEAL+LKEDM+++++VK +  ++ SLIKGLC V
Sbjct: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240

Query: 123 NQLGSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
            +L  A               D  IY+TLI+ALFK+G+K E
Sbjct: 241 GELSLALGFKEEMVRNKIE-MDAGIYSTLINALFKAGRKNE 280



 Score = 67.0 bits (162), Expect = 9e-09
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
 Frame = -2

Query: 696 SLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRT 517
           +L+++  +I  L      D+  ++ + M       P   +F  +I+          AL  
Sbjct: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249

Query: 516 FERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACR 340
            E +   + E      +TL+NAL   G   ++  I  ++ +R   P+  TYN LI+  C+
Sbjct: 250 KEEMVRNKIEMDAGIYSTLINALFKAGRKNEVPGILKEMKERGCKPNSVTYNALISGFCK 309

Query: 339 NDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVF 160
                 A+ + DEM ++G   N +S+  ++  LC   + +EA  L EDM +      +V 
Sbjct: 310 EKDFEAAFTILDEMGHKGCKANPISYNVILGGLCKDGKCNEAKDLFEDMPR-QGCNPDVV 368

Query: 159 LYTSLIKGLCKVNQLGSA 106
            Y  L  GLC   Q G A
Sbjct: 369 SYRILFDGLCDGMQFGEA 386


>ref|XP_006858710.1| hypothetical protein AMTR_s00066p00107660 [Amborella trichopoda]
           gi|548862821|gb|ERN20177.1| hypothetical protein
           AMTR_s00066p00107660 [Amborella trichopoda]
          Length = 457

 Score =  289 bits (739), Expect = 1e-75
 Identities = 151/280 (53%), Positives = 204/280 (72%), Gaps = 4/280 (1%)
 Frame = -2

Query: 828 MEKL-KKVSPFRLSSLLRLEKDPNSALQLFRNP---NPNLNSAKPFRHSLLSYDLIISKL 661
           M+K+ KKV+PFRL++LLRLEKDP  ALQLF++P   NP+      FR+S LSYDLII KL
Sbjct: 1   MDKVTKKVNPFRLATLLRLEKDPKMALQLFQSPKIGNPS------FRYSSLSYDLIIQKL 54

Query: 660 GRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERT 481
           G+AKMF+QME IL +++ ETRF+P E +FC VI+FYGR R  + AL+T+ERIPSFRC RT
Sbjct: 55  GKAKMFEQMEAILQELQKETRFTPPEQLFCSVIKFYGRDRKPQIALQTYERIPSFRCPRT 114

Query: 480 VRSLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDE 301
           VR+LNTLLNALLNC + +    IH ++D+YASPD+CTYN+LI A C N+  + A+ +F+E
Sbjct: 115 VRALNTLLNALLNCRDMETFGRIHDELDQYASPDLCTYNILIKACCLNNSPDHAFQMFEE 174

Query: 300 MRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVN 121
           M + GI PN ++F TL+++LC+ SR++EA RLKEDMV  F+V+ N  +YTSL+KGL K N
Sbjct: 175 MVSNGIQPNAITFGTLITSLCSNSRLNEAFRLKEDMVWCFNVQPNSLVYTSLMKGLFKAN 234

Query: 120 QLGSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           +L  A               D  +Y+TLI+ L  +G+ +E
Sbjct: 235 ELARAFQLKEEMVDNGIE-LDSGVYSTLIAGLCNAGRMQE 273



 Score = 57.0 bits (136), Expect = 1e-05
 Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 2/191 (1%)
 Frame = -2

Query: 693 LLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIR-FYGRARLSEQALRT 517
           L +Y+++I         D   Q+ ++M +     P  I F  +I      +RL+E     
Sbjct: 149 LCTYNILIKACCLNNSPDHAFQMFEEM-VSNGIQPNAITFGTLITSLCSNSRLNEAFRLK 207

Query: 516 FERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLD-IDRYASPDVCTYNVLINAACR 340
            + +  F  +       +L+  L    E  +  ++  + +D     D   Y+ LI   C 
Sbjct: 208 EDMVWCFNVQPNSLVYTSLMKGLFKANELARAFQLKEEMVDNGIELDSGVYSTLIAGLCN 267

Query: 339 NDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVF 160
              + +   L  +M++ G +P+ V++  ++  LC ++ ++ A  +  ++ K  H K +VF
Sbjct: 268 AGRMQEIDGLLKKMKSNGCEPDIVTYNAIICGLCKEADLESAFGVLNEITKKGHCKPDVF 327

Query: 159 LYTSLIKGLCK 127
            Y  LI GLC+
Sbjct: 328 TYNILIGGLCR 338


>gb|AHB18412.1| pentatricopeptide repeat-containing protein [Gossypium hirsutum]
          Length = 471

 Score =  288 bits (736), Expect = 3e-75
 Identities = 142/273 (52%), Positives = 195/273 (71%), Gaps = 1/273 (0%)
 Frame = -2

Query: 816 KKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLN-SAKPFRHSLLSYDLIISKLGRAKMFD 640
           K +SPFRLSSLLR +KDP  A  LF+NP P+L  +AKPFR+SLLSYDLII+KLGR KMF 
Sbjct: 14  KPISPFRLSSLLRTQKDPTLAFNLFKNPIPDLRPTAKPFRYSLLSYDLIITKLGRVKMFQ 73

Query: 639 QMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSLNTL 460
           +MEQ+L Q+K +TR  P+EIIFC+VI+FYGRA+L ++AL+ F+ +P +RC RTV+++N+L
Sbjct: 74  EMEQVLHQLKSDTRIVPEEIIFCNVIKFYGRAKLHDRALQVFDEMPQYRCPRTVKAVNSL 133

Query: 459 LNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRNRGID 280
           L+ALL   +   ++++ L +++YA PD CTYN+LI A C N  L+DAWNLFDEM+ +G+ 
Sbjct: 134 LHALLTSEKFDDMKQVFLGMEKYARPDACTYNILIRACCLNGCLDDAWNLFDEMQRKGVK 193

Query: 279 PNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLGSAXX 100
           P+ V+F TL++ALC + ++ EA +LK DMVKI  V  N  LY  +I GLC + +L  A  
Sbjct: 194 PDQVTFGTLINALCVELKIKEAFKLKNDMVKIHKVSPNTRLYEGMITGLCSIGELTWAFR 253

Query: 99  XXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
                        + AIY TLIS LF  G++ E
Sbjct: 254 LKDEMITNNMKP-NSAIYNTLISGLFNVGRQDE 285



 Score = 63.9 bits (154), Expect = 8e-08
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
 Frame = -2

Query: 468 NTLLNALLNCGEHKKIREIHLDIDRYA-SPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           NTL++ L N G   +   +  +++     PD  TYNV+IN  C+      A+ +  EM +
Sbjct: 271 NTLISGLFNVGRQDEACRVFEEMELNGIKPDTTTYNVMINEFCKVKDFGSAYRVLKEMPD 330

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           +G  PN +S+  L+  LC   +  EA  L ED +     K +V  Y  L  GLC  +QL 
Sbjct: 331 KGCKPNIISYNMLIGVLCKDGKWSEANDLFED-IPGQGCKPDVVSYRMLFDGLCGGSQLK 389

Query: 111 SA 106
            A
Sbjct: 390 KA 391



 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 37/170 (21%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
 Frame = -2

Query: 630 QILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSLNTLLNA 451
           ++ D+M +     P   I+  +I         ++A R FE +     +    + N ++N 
Sbjct: 253 RLKDEM-ITNNMKPNSAIYNTLISGLFNVGRQDEACRVFEEMELNGIKPDTTTYNVMINE 311

Query: 450 LLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRNRGIDPN 274
                +      +  ++ D+   P++ +YN+LI   C++   ++A +LF+++  +G  P+
Sbjct: 312 FCKVKDFGSAYRVLKEMPDKGCKPNIISYNMLIGVLCKDGKWSEANDLFEDIPGQGCKPD 371

Query: 273 DVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKV 124
            VS+  L   LC  S++ +A  + ++MV   +V  +  ++   + GLC+V
Sbjct: 372 VVSYRMLFDGLCGGSQLKKAAFILDEMVFKGYVPHSASIH-KFVSGLCQV 420



 Score = 57.4 bits (137), Expect = 7e-06
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 1/167 (0%)
 Frame = -2

Query: 684 YDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERI 505
           Y+ +IS L      D+  ++ ++M+L     P    +  +I  + + +    A R  + +
Sbjct: 270 YNTLISGLFNVGRQDEACRVFEEMELNG-IKPDTTTYNVMINEFCKVKDFGSAYRVLKEM 328

Query: 504 PSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDID-RYASPDVCTYNVLINAACRNDLL 328
           P   C+  + S N L+  L   G+  +  ++  DI  +   PDV +Y +L +  C    L
Sbjct: 329 PDKGCKPNIISYNMLIGVLCKDGKWSEANDLFEDIPGQGCKPDVVSYRMLFDGLCGGSQL 388

Query: 327 NDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVK 187
             A  + DEM  +G  P+  S    VS LC         R+ E + K
Sbjct: 389 KKAAFILDEMVFKGYVPHSASIHKFVSGLCQVENKKLLFRVLESLAK 435


>ref|XP_002317451.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222860516|gb|EEE98063.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 461

 Score =  286 bits (731), Expect = 1e-74
 Identities = 144/276 (52%), Positives = 192/276 (69%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSAKPFRHSLLSYDLIISKLGRAK 649
           M   + ++PFRL+SLLRL+KDP  ALQLF+NPNP   S KPFR+SLLSYDLII+KLGRAK
Sbjct: 1   MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPKTPS-KPFRYSLLSYDLIITKLGRAK 59

Query: 648 MFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSL 469
           MF++M++IL Q+K ET F+PKE +FCD+I FYGRARL E AL+    +PSFR +RTV+S 
Sbjct: 60  MFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQRTVKSY 119

Query: 468 NTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRNR 289
           N+LL+  L C +  K+RE+ + I++    D CTYN+LI   C +  L+DA  +FDEM NR
Sbjct: 120 NSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFDEMTNR 179

Query: 288 GIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLGS 109
           G+ PN ++F  L+   C   R+ EA +LK DMVK++ V  N ++Y SLIKG+CK  +L  
Sbjct: 180 GVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKGVCKNGELSL 239

Query: 108 AXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           A               D AIY+TLIS LFK+G+K+E
Sbjct: 240 AFRLKKEMIRNKIE-LDPAIYSTLISGLFKAGRKEE 274


>ref|XP_006358934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Solanum tuberosum]
          Length = 470

 Score =  285 bits (729), Expect = 2e-74
 Identities = 147/279 (52%), Positives = 197/279 (70%), Gaps = 3/279 (1%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNS---AKPFRHSLLSYDLIISKLG 658
           MEK+KKVS F LSSLLR +KD   ALQLF NPNP+  S    KPFR+S L YDLII KLG
Sbjct: 1   MEKVKKVSSFSLSSLLRQQKDAKIALQLFLNPNPSHGSNKTTKPFRYSPLCYDLIICKLG 60

Query: 657 RAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTV 478
           RAK+F +ME+I+D+++ +TR S  E++FC+VI FYGRA L E+AL  +  IPSFRC R++
Sbjct: 61  RAKLFQEMEKIIDKLRHDTRVSLNEVVFCNVISFYGRAHLPEKALHMYNEIPSFRCYRSI 120

Query: 477 RSLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEM 298
           +S+N+LLNALL C E+ KIRE+  + + YA+PDVCT+N+L+N +C    L+ A  +FDEM
Sbjct: 121 KSVNSLLNALLACKEYSKIREMLNNFENYATPDVCTFNILMNVSCLCGDLDSAREVFDEM 180

Query: 297 RNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQ 118
           R RGI PN V+F TL++ LC    +DEA R+K+ M + F +K N F+Y +LIKGLCKV+ 
Sbjct: 181 RKRGIQPNVVTFGTLINGLCMNRELDEAFRMKKIMERDFKLKPNAFVYVALIKGLCKVDD 240

Query: 117 LGSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           L +A               D A+Y+TLISA F+ G++ E
Sbjct: 241 LDAAVKMKEEMLRKKVE-LDSAVYSTLISAYFRIGRRDE 278



 Score = 63.2 bits (152), Expect = 1e-07
 Identities = 41/198 (20%), Positives = 93/198 (46%), Gaps = 1/198 (0%)
 Frame = -2

Query: 696 SLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRT 517
           +++++  +I+ L   +  D+  ++   M+ + +  P   ++  +I+   +    + A++ 
Sbjct: 188 NVVTFGTLINGLCMNRELDEAFRMKKIMERDFKLKPNAFVYVALIKGLCKVDDLDAAVKM 247

Query: 516 FERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDIDRYASP-DVCTYNVLINAACR 340
            E +   + E      +TL++A    G   ++  +  ++++     D  T+N L++  C+
Sbjct: 248 KEEMLRKKVELDSAVYSTLISAYFRIGRRDEVYGLLTEMEKNGCKCDTVTFNALMHGYCQ 307

Query: 339 NDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVF 160
               + A+ + DEM  +G  P+ +S   ++  LC   ++ EA  L +DM +    K +V 
Sbjct: 308 EKDFDSAFKVLDEMEGKGCKPDVISCNVIIRGLCDDGKLREASELLDDMPR-RRCKPDVV 366

Query: 159 LYTSLIKGLCKVNQLGSA 106
            Y   + GLCK  Q   A
Sbjct: 367 SYRIYLDGLCKAKQFKEA 384


>ref|XP_006477884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Citrus sinensis]
          Length = 465

 Score =  285 bits (728), Expect = 2e-74
 Identities = 145/281 (51%), Positives = 198/281 (70%), Gaps = 5/281 (1%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSA-----KPFRHSLLSYDLIISK 664
           M K K  SPFRL+SLLRL+KDP  ALQLF+NPNPN N+      KPFR++LL YDLII+K
Sbjct: 1   MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60

Query: 663 LGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCER 484
           LGRAKMF +M++IL Q+K +TR  P+EIIFC+VI FYGRARL E AL+ F+ + SF  +R
Sbjct: 61  LGRAKMFGEMQKILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120

Query: 483 TVRSLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFD 304
           TV+S NTLLNA+L CG+  ++ ++   +++Y SPD C+YN+L++    +  L DAW +FD
Sbjct: 121 TVKSFNTLLNAMLTCGKLDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180

Query: 303 EMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKV 124
           EM  R + P  V+F TL+  LC + R+DEAL+LKEDM+++++VK +  ++ SLIKGLC V
Sbjct: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240

Query: 123 NQLGSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
            +L  A               D  IY+TLI+ALFK+ +K E
Sbjct: 241 GELSLALGFKEEMVRNKIE-MDAGIYSTLINALFKARRKNE 280



 Score = 63.9 bits (154), Expect = 8e-08
 Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 1/198 (0%)
 Frame = -2

Query: 696 SLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRT 517
           +L+++  +I  L      D+  ++ + M       P   +F  +I+          AL  
Sbjct: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249

Query: 516 FERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACR 340
            E +   + E      +TL+NAL       ++  I  ++ +R   P+  TYN LI+  C+
Sbjct: 250 KEEMVRNKIEMDAGIYSTLINALFKARRKNEVPGILKEMKERGCKPNSVTYNALISGFCK 309

Query: 339 NDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVF 160
                 A+ + DEM ++G   N +S+  ++  LC   + +EA  L EDM +      +V 
Sbjct: 310 EKDFEAAFTILDEMGHKGCKANPISYNVILGGLCKDGKCNEAKDLFEDMPR-QGCNPDVV 368

Query: 159 LYTSLIKGLCKVNQLGSA 106
            Y  L  GLC   Q G A
Sbjct: 369 SYRILFDGLCDGMQFGEA 386


>ref|XP_007021815.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 1 [Theobroma cacao] gi|508721443|gb|EOY13340.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative isoform 1 [Theobroma cacao]
          Length = 460

 Score =  276 bits (705), Expect = 1e-71
 Identities = 139/277 (50%), Positives = 196/277 (70%), Gaps = 1/277 (0%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSA-KPFRHSLLSYDLIISKLGRA 652
           M+  K +SPFRLSSLLR EKDP  A  LF+NPNP+   A KPFR+S LSYDLII+KLGRA
Sbjct: 1   MKTPKSISPFRLSSLLRSEKDPTLAFNLFKNPNPDPKPAGKPFRYSPLSYDLIITKLGRA 60

Query: 651 KMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRS 472
           +MFD+MEQ+L Q K +TR  P+EIIFC+ ++FYGRA L E+AL+ FE +P++RC+RTV+S
Sbjct: 61  RMFDEMEQVLHQHKNDTRLVPQEIIFCNAMKFYGRACLHERALQLFEEMPAYRCQRTVKS 120

Query: 471 LNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           +N+LLNALL   +  +++++   +++YA PD CTYN+LI A C +  L+DA NLFDEM+ 
Sbjct: 121 VNSLLNALLLSEKFDEMKQVFFGMEKYARPDACTYNILIRACCLSGCLDDASNLFDEMQR 180

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           +G+ PN V+F TL+  LC + +++EA +LK DMV++  +  N   Y+ +IKGLC++ +L 
Sbjct: 181 KGVKPNVVTFGTLIRGLCMEMKVNEAFKLKADMVRLHGLCPNPCTYSMMIKGLCRIGELS 240

Query: 111 SAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
            A               D +IY+TLIS  F  G++ E
Sbjct: 241 LAIRLKEEMVGNKIK-VDSSIYSTLISGHFNIGRQDE 276



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 4/256 (1%)
 Frame = -2

Query: 756 ALQLFRNPNPNLNSAKPFRHSLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEII 577
           ALQLF         A   + ++ S + +++ L  ++ FD+M+Q+   M+   R  P    
Sbjct: 102 ALQLFEEM-----PAYRCQRTVKSVNSLLNALLLSEKFDEMKQVFFGMEKYAR--PDACT 154

Query: 576 FCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDID 397
           +  +IR    +   + A   F+ +     +  V +  TL+  L  C E K      L  D
Sbjct: 155 YNILIRACCLSGCLDDASNLFDEMQRKGVKPNVVTFGTLIRGL--CMEMKVNEAFKLKAD 212

Query: 396 RYA----SPDVCTYNVLINAACRNDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKS 229
                   P+ CTY+++I   CR   L+ A  L +EM    I  +   ++TL+S      
Sbjct: 213 MVRLHGLCPNPCTYSMMIKGLCRIGELSLAIRLKEEMVGNKIKVDSSIYSTLISGHFNIG 272

Query: 228 RMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLGSAXXXXXXXXXXXXLGFDRAI 49
           R DEAL + E+M  +   K +   Y   I G CKV    +A               D   
Sbjct: 273 RQDEALGIFEEMA-LNECKPDTVTYNETINGFCKVKDFEAAYRVLEDMAKKQCKP-DVIS 330

Query: 48  YTTLISALFKSGQKKE 1
           Y  LI  L K G+  E
Sbjct: 331 YNILIDGLCKEGKWSE 346



 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 1/188 (0%)
 Frame = -2

Query: 687 SYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFER 508
           +Y ++I  L R        ++ ++M +  +      I+  +I  +      ++AL  FE 
Sbjct: 225 TYSMMIKGLCRIGELSLAIRLKEEM-VGNKIKVDSSIYSTLISGHFNIGRQDEALGIFEE 283

Query: 507 IPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACRNDL 331
           +    C+    + N  +N      + +    +  D+  +   PDV +YN+LI+  C+   
Sbjct: 284 MALNECKPDTVTYNETINGFCKVKDFEAAYRVLEDMAKKQCKPDVISYNILIDGLCKEGK 343

Query: 330 LNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYT 151
            ++A +LF++M  +G  P+ VS+  L   LC   +  EA  + ++M+   +V     ++ 
Sbjct: 344 WSEANDLFEDMPRQGCKPDVVSYRLLFDGLCGGLQFKEAAFILDEMIFKGYVPHCASIH- 402

Query: 150 SLIKGLCK 127
             + GLC+
Sbjct: 403 KFVSGLCQ 410


>ref|XP_007021816.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           isoform 2 [Theobroma cacao] gi|508721444|gb|EOY13341.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative isoform 2 [Theobroma cacao]
          Length = 460

 Score =  275 bits (704), Expect = 1e-71
 Identities = 139/277 (50%), Positives = 196/277 (70%), Gaps = 1/277 (0%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNSA-KPFRHSLLSYDLIISKLGRA 652
           M+  K +SPFRLSSLLR EKDP  A  LF+NPNP+   A KPFR+S LSYDLII+KLGRA
Sbjct: 1   MKTPKPISPFRLSSLLRSEKDPTLAFNLFKNPNPDPKPAGKPFRYSPLSYDLIITKLGRA 60

Query: 651 KMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRS 472
           +MFD+MEQ+L Q K +TR  P+EIIFC+ ++FYGRA L E+AL+ FE +P++RC+RTV+S
Sbjct: 61  RMFDEMEQVLHQHKNDTRLVPQEIIFCNAMKFYGRACLHERALQLFEEMPAYRCQRTVKS 120

Query: 471 LNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           +N+LLNALL   +  +++++   +++YA PD CTYN+LI A C +  L+DA NLFDEM+ 
Sbjct: 121 VNSLLNALLLSEKFDEMKQVFFGMEKYARPDACTYNILIRACCLSGCLDDASNLFDEMQR 180

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           +G+ PN V+F TL+  LC + +++EA +LK DMV++  +  N   Y+ +IKGLC++ +L 
Sbjct: 181 KGVKPNVVTFGTLIRGLCMEMKVNEAFKLKADMVRLHGLCPNPCTYSMMIKGLCRIGELS 240

Query: 111 SAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
            A               D +IY+TLIS  F  G++ E
Sbjct: 241 LAIRLKEEMVGNKIK-VDSSIYSTLISGHFNIGRQDE 276



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 4/256 (1%)
 Frame = -2

Query: 756 ALQLFRNPNPNLNSAKPFRHSLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEII 577
           ALQLF         A   + ++ S + +++ L  ++ FD+M+Q+   M+   R  P    
Sbjct: 102 ALQLFEEM-----PAYRCQRTVKSVNSLLNALLLSEKFDEMKQVFFGMEKYAR--PDACT 154

Query: 576 FCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDID 397
           +  +IR    +   + A   F+ +     +  V +  TL+  L  C E K      L  D
Sbjct: 155 YNILIRACCLSGCLDDASNLFDEMQRKGVKPNVVTFGTLIRGL--CMEMKVNEAFKLKAD 212

Query: 396 RYA----SPDVCTYNVLINAACRNDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKS 229
                   P+ CTY+++I   CR   L+ A  L +EM    I  +   ++TL+S      
Sbjct: 213 MVRLHGLCPNPCTYSMMIKGLCRIGELSLAIRLKEEMVGNKIKVDSSIYSTLISGHFNIG 272

Query: 228 RMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLGSAXXXXXXXXXXXXLGFDRAI 49
           R DEAL + E+M  +   K +   Y   I G CKV    +A               D   
Sbjct: 273 RQDEALGIFEEMA-LNECKPDTVTYNETINGFCKVKDFEAAYRVLEDMAKKQCKP-DVIS 330

Query: 48  YTTLISALFKSGQKKE 1
           Y  LI  L K G+  E
Sbjct: 331 YNILIDGLCKEGKWSE 346



 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 1/188 (0%)
 Frame = -2

Query: 687 SYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFER 508
           +Y ++I  L R        ++ ++M +  +      I+  +I  +      ++AL  FE 
Sbjct: 225 TYSMMIKGLCRIGELSLAIRLKEEM-VGNKIKVDSSIYSTLISGHFNIGRQDEALGIFEE 283

Query: 507 IPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACRNDL 331
           +    C+    + N  +N      + +    +  D+  +   PDV +YN+LI+  C+   
Sbjct: 284 MALNECKPDTVTYNETINGFCKVKDFEAAYRVLEDMAKKQCKPDVISYNILIDGLCKEGK 343

Query: 330 LNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYT 151
            ++A +LF++M  +G  P+ VS+  L   LC   +  EA  + ++M+   +V     ++ 
Sbjct: 344 WSEANDLFEDMPRQGCKPDVVSYRLLFDGLCGGLQFKEAAFILDEMIFKGYVPHCASIH- 402

Query: 150 SLIKGLCK 127
             + GLC+
Sbjct: 403 KFVSGLCQ 410


>ref|XP_004252119.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Solanum lycopersicum]
          Length = 487

 Score =  273 bits (699), Expect = 5e-71
 Identities = 142/279 (50%), Positives = 192/279 (68%), Gaps = 3/279 (1%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLNS---AKPFRHSLLSYDLIISKLG 658
           MEK+KKVS F LSSLLR +KD   ALQLF NPNP+  S    KPFR+S L YDLII KLG
Sbjct: 1   MEKVKKVSSFSLSSLLRQQKDAKIALQLFLNPNPSHGSDKTTKPFRYSPLCYDLIICKLG 60

Query: 657 RAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTV 478
           R K+F +ME+I+D+++ +TR S  E++FC+VI FYGRA L ++AL  F  IPSFRC R++
Sbjct: 61  RGKLFQEMEKIIDKLRQDTRVSLNEVVFCNVISFYGRAHLPDKALHMFNEIPSFRCYRSI 120

Query: 477 RSLNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEM 298
           +S+N+LLNALL C E+ KI E+  + + YA+PDVCT+N+L+NA C    L  A  +FDEM
Sbjct: 121 KSVNSLLNALLACKEYSKIGEMLNNFENYATPDVCTFNILMNACCLCGDLGGAREVFDEM 180

Query: 297 RNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQ 118
             RGI PN V+F TL++ LC    ++EA R+K+ M + F +K N F++ +LIKGLCKV+ 
Sbjct: 181 CERGIQPNVVTFGTLINGLCVNREINEAFRMKKIMERDFKLKPNAFVFVALIKGLCKVDD 240

Query: 117 LGSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           L +A               D  +Y+TLISA F+ G++ E
Sbjct: 241 LDAAVKMKEEMLRKKVE-LDSTVYSTLISAYFRVGRRDE 278



 Score = 61.2 bits (147), Expect = 5e-07
 Identities = 41/198 (20%), Positives = 92/198 (46%), Gaps = 1/198 (0%)
 Frame = -2

Query: 696 SLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRT 517
           +++++  +I+ L   +  ++  ++   M+ + +  P   +F  +I+   +    + A++ 
Sbjct: 188 NVVTFGTLINGLCVNREINEAFRMKKIMERDFKLKPNAFVFVALIKGLCKVDDLDAAVKM 247

Query: 516 FERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDIDRYASP-DVCTYNVLINAACR 340
            E +   + E      +TL++A    G   ++  +  +++      D  T+N L++  C+
Sbjct: 248 KEEMLRKKVELDSTVYSTLISAYFRVGRRDEVNGLLTEMEMNGCKCDTVTFNALMHGYCQ 307

Query: 339 NDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVF 160
               + A+ + DEM  +G  P+ +S   ++  LC   ++ EA  L +DM +    K +V 
Sbjct: 308 EKDFDSAFKVLDEMEGKGCKPDVISCNVIIRGLCDDGKLREASELLDDMPR-RRCKPDVV 366

Query: 159 LYTSLIKGLCKVNQLGSA 106
            Y   + GLCK  Q   A
Sbjct: 367 SYRIYLDGLCKAKQFKEA 384


>ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297337587|gb|EFH68004.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 472

 Score =  273 bits (697), Expect = 9e-71
 Identities = 133/277 (48%), Positives = 191/277 (68%), Gaps = 1/277 (0%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNP-NLNSAKPFRHSLLSYDLIISKLGRA 652
           M  +K VS FRL+SLLR E DP++A++LFRNP+P + N  +PFR+SLL YD+II+KLG +
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAIKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGS 60

Query: 651 KMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRS 472
           KMFD+++Q+L Q+K +TR  P EI+FC+VI F+GR RL  +AL  F+ +P +RC+RTV+S
Sbjct: 61  KMFDELDQVLLQLKTDTRIVPTEILFCNVINFFGRGRLPSRALHMFDEMPQYRCQRTVKS 120

Query: 471 LNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           LN+LLN LL CGE +K++E    ID +  PD CTYN+LI+   +    +DA  LFDEM  
Sbjct: 121 LNSLLNTLLKCGEFEKMKERLSSIDEFGKPDACTYNILIHGCSQRGCFDDALKLFDEMVK 180

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           + + P  V+F TL+  LC   R+ EAL++K+DM+K++ V+  V +Y SL+K LC++ +L 
Sbjct: 181 KKVKPTGVTFGTLIHGLCKNLRVKEALKMKQDMLKVYGVRPTVHIYASLVKALCQIGELS 240

Query: 111 SAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
            A               D AIY+TLIS+L K+G+  E
Sbjct: 241 FAFKLKDEAYEGKIK-VDSAIYSTLISSLIKAGRSNE 276



 Score = 57.0 bits (136), Expect = 1e-05
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
 Frame = -2

Query: 468 NTLLNALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           +TL+++L+  G   ++  I  ++ ++   PD  TYNVLIN  C  +    A+ + DEM  
Sbjct: 262 STLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEMVE 321

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           +G+ P+ +S+  ++  L    + +EA  L EDM +      +   Y  +  GLC+  Q  
Sbjct: 322 KGLKPDVISYNMILGVLFRIQKWEEATYLFEDMPR-RGCSPDTLSYRIVFDGLCEGLQFE 380

Query: 111 SA 106
            A
Sbjct: 381 EA 382


>ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g53330 gi|7769859|gb|AAF69537.1|AC008007_12
           F12M16.23 [Arabidopsis thaliana]
           gi|332194805|gb|AEE32926.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 471

 Score =  271 bits (693), Expect = 3e-70
 Identities = 134/277 (48%), Positives = 192/277 (69%), Gaps = 1/277 (0%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNP-NLNSAKPFRHSLLSYDLIISKLGRA 652
           M  +K VS FRL+SLLR E DP++A++LFRNP+P + N  +PFR+SLL YD+II+KLG +
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGS 60

Query: 651 KMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRS 472
           KMFD+++Q+L  +K +TR  P EIIFC+VI F+GR +L  +AL  F+ +P +RC+RTV+S
Sbjct: 61  KMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKS 120

Query: 471 LNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           LN+LL+ALL CGE +K++E    ID +  PD CTYN+LI+   ++   +DA  LFDEM  
Sbjct: 121 LNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVK 180

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           + + P  V+F TL+  LC  SR+ EAL++K DM+K++ V+  V +Y SLIK LC++ +L 
Sbjct: 181 KKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELS 240

Query: 111 SAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
            A               D AIY+TLIS+L K+G+  E
Sbjct: 241 FAFKLKDEAYEGKIK-VDAAIYSTLISSLIKAGRSNE 276


>ref|XP_007021814.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao] gi|508721442|gb|EOY13339.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative [Theobroma cacao]
          Length = 460

 Score =  270 bits (691), Expect = 4e-70
 Identities = 135/277 (48%), Positives = 194/277 (70%), Gaps = 1/277 (0%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNPNLN-SAKPFRHSLLSYDLIISKLGRA 652
           M+  K +SPFRLSSLLR EKDP  A  LF+NPNP+   S KPFR+S LSYDLII+KLGRA
Sbjct: 1   MKTPKPISPFRLSSLLRSEKDPTLAFNLFKNPNPDPKPSGKPFRYSPLSYDLIITKLGRA 60

Query: 651 KMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRS 472
           +MFD+MEQ+L Q+K + R  P+EIIFC+ ++FYGRA L ++AL+ FE +P +RC+RTV+S
Sbjct: 61  RMFDEMEQVLHQLKNDIRLVPQEIIFCNAMKFYGRACLHKRALQLFEGMPEYRCQRTVKS 120

Query: 471 LNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           +N+LLNALL   +  +++++   +++YA PD CTYN+L+ A C +  L+DA NLFDEM+ 
Sbjct: 121 VNSLLNALLLSEKFDEMKQVFFGMEKYARPDACTYNILLRACCLSRCLDDASNLFDEMQR 180

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           +G+ PN V+F TL+  LC + ++ EA +LK DMV++  +  N   Y+ +IKGLC++ +L 
Sbjct: 181 KGVKPNAVTFGTLIRGLCMEMKVKEAFKLKADMVRLHGLFPNPCTYSMMIKGLCRIGELS 240

Query: 111 SAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
            A               D +IY+TL+S  F  G++ E
Sbjct: 241 LAIRLKEEMVGNKMK-VDSSIYSTLVSGHFNVGRQDE 276



 Score = 62.8 bits (151), Expect = 2e-07
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 2/236 (0%)
 Frame = -2

Query: 702 RHSLLSYDLIISKLGRAKMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQAL 523
           + ++ S + +++ L  ++ FD+M+Q+   M+   R  P    +  ++R    +R  + A 
Sbjct: 115 QRTVKSVNSLLNALLLSEKFDEMKQVFFGMEKYAR--PDACTYNILLRACCLSRCLDDAS 172

Query: 522 RTFERIPSFRCERTVRSLNTLLNALLNCGEHKKIREIHLDIDRYAS--PDVCTYNVLINA 349
             F+ +     +    +  TL+  L    + K+  ++  D+ R     P+ CTY+++I  
Sbjct: 173 NLFDEMQRKGVKPNAVTFGTLIRGLCMEMKVKEAFKLKADMVRLHGLFPNPCTYSMMIKG 232

Query: 348 ACRNDLLNDAWNLFDEMRNRGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKL 169
            CR   L+ A  L +EM    +  +   ++TLVS      R DEAL + E+M  +   KL
Sbjct: 233 LCRIGELSLAIRLKEEMVGNKMKVDSSIYSTLVSGHFNVGRQDEALGIFEEMA-LNECKL 291

Query: 168 NVFLYTSLIKGLCKVNQLGSAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
           +   Y  +I G CKV    +A               D   Y  LI  L K G+  E
Sbjct: 292 DTVTYNVMINGFCKVKDFEAAYRVLEDMANKQCKP-DVISYNILIGGLCKEGKWSE 346



 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 37/170 (21%), Positives = 81/170 (47%), Gaps = 1/170 (0%)
 Frame = -2

Query: 633 EQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRSLNTLLN 454
           E + ++MK+++       I+  ++  +      ++AL  FE +    C+    + N ++N
Sbjct: 248 EMVGNKMKVDSS------IYSTLVSGHFNVGRQDEALGIFEEMALNECKLDTVTYNVMIN 301

Query: 453 ALLNCGEHKKIREIHLDI-DRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRNRGIDP 277
                 + +    +  D+ ++   PDV +YN+LI   C+    ++A +LF++M  +G  P
Sbjct: 302 GFCKVKDFEAAYRVLEDMANKQCKPDVISYNILIGGLCKEGKWSEANDLFEDMPRQGCKP 361

Query: 276 NDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCK 127
           + VS+  L    C   +  EA  + ++M+   +V     ++   + GLC+
Sbjct: 362 DVVSYRLLFDGFCGGLQFKEAAFILDEMIFKGYVPHCARIH-KFVSGLCQ 410


>ref|XP_006307423.1| hypothetical protein CARUB_v10009047mg [Capsella rubella]
           gi|482576134|gb|EOA40321.1| hypothetical protein
           CARUB_v10009047mg [Capsella rubella]
          Length = 469

 Score =  268 bits (684), Expect = 3e-69
 Identities = 131/277 (47%), Positives = 191/277 (68%), Gaps = 1/277 (0%)
 Frame = -2

Query: 828 MEKLKKVSPFRLSSLLRLEKDPNSALQLFRNPNP-NLNSAKPFRHSLLSYDLIISKLGRA 652
           M  +K VS FRL+SLLR E DP++A++LFRNP+P + N  +PFR+S+L YDLII+KLG +
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAVKLFRNPDPESTNPKRPFRYSILCYDLIITKLGGS 60

Query: 651 KMFDQMEQILDQMKLETRFSPKEIIFCDVIRFYGRARLSEQALRTFERIPSFRCERTVRS 472
           KMFD+++Q+L Q+K +TR  P EI+FC+VI F+GR RL  +AL  F+ +P +RC+RT++S
Sbjct: 61  KMFDELDQVLLQLKTDTRVVPTEILFCNVINFFGRGRLPSRALHMFDEMPQYRCKRTMKS 120

Query: 471 LNTLLNALLNCGEHKKIREIHLDIDRYASPDVCTYNVLINAACRNDLLNDAWNLFDEMRN 292
           +N+LLN L  CGE  K+RE+   ID +  PD CTYN+LI+   ++   +DA  LFDEM  
Sbjct: 121 VNSLLNVLSKCGEFDKMRELLSGIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVK 180

Query: 291 RGIDPNDVSFATLVSALCAKSRMDEALRLKEDMVKIFHVKLNVFLYTSLIKGLCKVNQLG 112
           + + P  V+F TL+  LC  SR+ EAL++K+DM+K++ V   V +Y S+IK LC++ +L 
Sbjct: 181 KKVKPTGVTFGTLIHGLCKNSRVKEALKMKQDMLKVYGVCPTVHIYASVIKALCQIGELS 240

Query: 111 SAXXXXXXXXXXXXLGFDRAIYTTLISALFKSGQKKE 1
            A               D AIY+TLIS++ K+G+  E
Sbjct: 241 FAFQLKDEAYEGKIK-VDSAIYSTLISSVIKAGRSNE 276