BLASTX nr result
ID: Cocculus23_contig00029919
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00029919
(846 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007040007.1| Nucleotide excision repair, TFIIH, subunit T... 132 2e-28
ref|XP_002266482.1| PREDICTED: general transcription factor IIH ... 129 1e-27
ref|XP_006368720.1| hypothetical protein POPTR_0001s08090g [Popu... 128 2e-27
ref|XP_007210944.1| hypothetical protein PRUPE_ppa024121mg [Prun... 126 9e-27
ref|XP_003566711.1| PREDICTED: xylem cysteine proteinase 1-like ... 125 2e-26
ref|XP_004298704.1| PREDICTED: general transcription factor IIH ... 124 4e-26
ref|NP_001060068.1| Os07g0573600 [Oryza sativa Japonica Group] g... 123 8e-26
ref|XP_006417239.1| hypothetical protein EUTSA_v10009271mg [Eutr... 123 1e-25
gb|EEC78671.1| hypothetical protein OsI_18797 [Oryza sativa Indi... 122 2e-25
ref|XP_006477302.1| PREDICTED: general transcription factor IIH ... 121 3e-25
gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana] 120 5e-25
ref|XP_004147953.1| PREDICTED: general transcription factor IIH ... 120 6e-25
ref|XP_002889933.1| hypothetical protein ARALYDRAFT_471390 [Arab... 120 6e-25
ref|XP_002313692.1| hypothetical protein POPTR_0009s14080g [Popu... 120 6e-25
ref|NP_172702.1| nucleotide excision repair, TFIIH, subunit TTDA... 120 8e-25
ref|XP_004960540.1| PREDICTED: uncharacterized protein LOC101780... 119 2e-24
ref|XP_002440981.1| hypothetical protein SORBIDRAFT_09g018330 [S... 117 5e-24
gb|EMT14713.1| General transcription factor IIH subunit 5 [Aegil... 116 1e-23
dbj|BAK07005.1| predicted protein [Hordeum vulgare subsp. vulgare] 115 2e-23
ref|XP_006584882.1| PREDICTED: general transcription factor IIH ... 115 3e-23
>ref|XP_007040007.1| Nucleotide excision repair, TFIIH, subunit TTDA isoform 1
[Theobroma cacao] gi|590677408|ref|XP_007040008.1|
Nucleotide excision repair, TFIIH, subunit TTDA isoform
1 [Theobroma cacao] gi|508777252|gb|EOY24508.1|
Nucleotide excision repair, TFIIH, subunit TTDA isoform
1 [Theobroma cacao] gi|508777253|gb|EOY24509.1|
Nucleotide excision repair, TFIIH, subunit TTDA isoform
1 [Theobroma cacao]
Length = 70
Score = 132 bits (331), Expect = 2e-28
Identities = 62/70 (88%), Positives = 66/70 (94%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNATKGL ISCDIPMAQFI+NLNA++PASQKFIIHVLDNTH FVQPH EMIRSAISEF
Sbjct: 1 MVNATKGLFISCDIPMAQFIVNLNASMPASQKFIIHVLDNTHFFVQPHAAEMIRSAISEF 60
Query: 493 RDQNSYEKPT 464
RDQNSY+KPT
Sbjct: 61 RDQNSYDKPT 70
>ref|XP_002266482.1| PREDICTED: general transcription factor IIH subunit 5 [Vitis
vinifera] gi|297742669|emb|CBI34818.3| unnamed protein
product [Vitis vinifera]
Length = 70
Score = 129 bits (325), Expect = 1e-27
Identities = 61/69 (88%), Positives = 67/69 (97%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNATKGL ISCDIPMAQFIIN+NA++PASQKFIIHVLD+TH+FVQPHV EMIRSAISEF
Sbjct: 1 MVNATKGLFISCDIPMAQFIINMNASMPASQKFIIHVLDSTHLFVQPHVAEMIRSAISEF 60
Query: 493 RDQNSYEKP 467
R+QNSYEKP
Sbjct: 61 REQNSYEKP 69
>ref|XP_006368720.1| hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
gi|566147875|ref|XP_006368721.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|566147877|ref|XP_006368722.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346807|gb|ERP65289.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346808|gb|ERP65290.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
gi|550346809|gb|ERP65291.1| hypothetical protein
POPTR_0001s08090g [Populus trichocarpa]
Length = 70
Score = 128 bits (322), Expect = 2e-27
Identities = 60/70 (85%), Positives = 68/70 (97%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNATKGL ISCDIPMAQFIINLNA+LPASQKFIIH+LD+TH+FVQPHV +MIRSAIS+F
Sbjct: 1 MVNATKGLFISCDIPMAQFIINLNASLPASQKFIIHILDSTHMFVQPHVSDMIRSAISDF 60
Query: 493 RDQNSYEKPT 464
R+QNSYEKP+
Sbjct: 61 REQNSYEKPS 70
>ref|XP_007210944.1| hypothetical protein PRUPE_ppa024121mg [Prunus persica]
gi|595860542|ref|XP_007211160.1| hypothetical protein
PRUPE_ppb011951mg [Prunus persica]
gi|462406679|gb|EMJ12143.1| hypothetical protein
PRUPE_ppa024121mg [Prunus persica]
gi|462406895|gb|EMJ12359.1| hypothetical protein
PRUPE_ppb011951mg [Prunus persica]
Length = 70
Score = 126 bits (317), Expect = 9e-27
Identities = 60/70 (85%), Positives = 64/70 (91%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNATKGL +SCDIPMAQFIIN N TLP SQ+FIIHVLD+TH+FVQPH EMIRSAISEF
Sbjct: 1 MVNATKGLFVSCDIPMAQFIINYNNTLPPSQQFIIHVLDSTHLFVQPHAAEMIRSAISEF 60
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 61 RDQNSYEKPT 70
>ref|XP_003566711.1| PREDICTED: xylem cysteine proteinase 1-like [Brachypodium
distachyon]
Length = 457
Score = 125 bits (315), Expect = 2e-26
Identities = 57/70 (81%), Positives = 66/70 (94%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KGL ISCD+PMAQFI+NLNA++PAS+KFI+H+LD TH+FVQPHVGEMIRS I+EF
Sbjct: 1 MVNAIKGLFISCDVPMAQFIVNLNASMPASEKFIVHMLDPTHMFVQPHVGEMIRSKIAEF 60
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 61 RDQNSYEKPT 70
>ref|XP_004298704.1| PREDICTED: general transcription factor IIH subunit 5-like isoform
1 [Fragaria vesca subsp. vesca]
gi|470125430|ref|XP_004298705.1| PREDICTED: general
transcription factor IIH subunit 5-like isoform 2
[Fragaria vesca subsp. vesca]
Length = 70
Score = 124 bits (311), Expect = 4e-26
Identities = 59/70 (84%), Positives = 63/70 (90%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNAT+GL ISCDIPMAQFIIN N +LP SQKFIIHVLD TH+FVQPH EMI+SAISEF
Sbjct: 1 MVNATRGLFISCDIPMAQFIINYNNSLPQSQKFIIHVLDGTHLFVQPHAAEMIKSAISEF 60
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 61 RDQNSYEKPT 70
>ref|NP_001060068.1| Os07g0573600 [Oryza sativa Japonica Group]
gi|34393555|dbj|BAC83153.1| unknown protein [Oryza
sativa Japonica Group] gi|113611604|dbj|BAF21982.1|
Os07g0573600 [Oryza sativa Japonica Group]
gi|215707252|dbj|BAG93712.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218199880|gb|EEC82307.1| hypothetical protein
OsI_26568 [Oryza sativa Indica Group]
gi|222637319|gb|EEE67451.1| hypothetical protein
OsJ_24828 [Oryza sativa Japonica Group]
Length = 131
Score = 123 bits (309), Expect = 8e-26
Identities = 57/70 (81%), Positives = 64/70 (91%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KGL ISCD+PMAQFI+NLNA++PAS KFI+H+LD TH+FVQPHV EMIRS ISEF
Sbjct: 62 MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSKISEF 121
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 122 RDQNSYEKPT 131
>ref|XP_006417239.1| hypothetical protein EUTSA_v10009271mg [Eutrema salsugineum]
gi|557095010|gb|ESQ35592.1| hypothetical protein
EUTSA_v10009271mg [Eutrema salsugineum]
Length = 70
Score = 123 bits (308), Expect = 1e-25
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KG+ ISCDIPMAQFI+N+N+++P+SQKFIIHVLD TH+FVQPHV +MIRS ISEF
Sbjct: 1 MVNAIKGVFISCDIPMAQFIVNMNSSMPSSQKFIIHVLDGTHLFVQPHVEQMIRSTISEF 60
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 61 RDQNSYEKPT 70
>gb|EEC78671.1| hypothetical protein OsI_18797 [Oryza sativa Indica Group]
gi|222630525|gb|EEE62657.1| hypothetical protein
OsJ_17460 [Oryza sativa Japonica Group]
Length = 81
Score = 122 bits (305), Expect = 2e-25
Identities = 56/70 (80%), Positives = 63/70 (90%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KGL ISCD+PMAQFI+NLNA++PAS KFI+H+LD TH+FVQPHV EMIR ISEF
Sbjct: 12 MVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRGKISEF 71
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 72 RDQNSYEKPT 81
>ref|XP_006477302.1| PREDICTED: general transcription factor IIH subunit 5-like isoform
X1 [Citrus sinensis] gi|568846947|ref|XP_006477303.1|
PREDICTED: general transcription factor IIH subunit
5-like isoform X2 [Citrus sinensis]
gi|568846949|ref|XP_006477304.1| PREDICTED: general
transcription factor IIH subunit 5-like isoform X3
[Citrus sinensis]
Length = 70
Score = 121 bits (304), Expect = 3e-25
Identities = 56/69 (81%), Positives = 65/69 (94%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KGL ISCDIPMAQFIIN+NA++P SQKFIIH+LD+TH+FVQP++ EMIRSAI+EF
Sbjct: 1 MVNAIKGLFISCDIPMAQFIINMNASMPQSQKFIIHILDSTHLFVQPNMAEMIRSAIAEF 60
Query: 493 RDQNSYEKP 467
RDQNSYEKP
Sbjct: 61 RDQNSYEKP 69
>gb|AAF79634.1|AC025416_8 F5O11.12 [Arabidopsis thaliana]
Length = 113
Score = 120 bits (302), Expect = 5e-25
Identities = 54/71 (76%), Positives = 65/71 (91%)
Frame = -3
Query: 676 IMVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISE 497
+MVNA KG+ +SCDIPM QFI+N+N ++P SQKFIIHVLD+TH+FVQPHV +MIRSAIS+
Sbjct: 42 LMVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISD 101
Query: 496 FRDQNSYEKPT 464
FRDQNSYEKPT
Sbjct: 102 FRDQNSYEKPT 112
>ref|XP_004147953.1| PREDICTED: general transcription factor IIH subunit 5-like [Cucumis
sativus] gi|449494289|ref|XP_004159503.1| PREDICTED:
general transcription factor IIH subunit 5-like [Cucumis
sativus]
Length = 70
Score = 120 bits (301), Expect = 6e-25
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KG+ ISCDIPMAQFIIN NA+LPAS +FIIH+LDNTH+FVQPHV +MIR+AISEF
Sbjct: 1 MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
Query: 493 RDQNSYEKPT 464
R+Q SYEKPT
Sbjct: 61 REQISYEKPT 70
>ref|XP_002889933.1| hypothetical protein ARALYDRAFT_471390 [Arabidopsis lyrata subsp.
lyrata] gi|297335775|gb|EFH66192.1| hypothetical protein
ARALYDRAFT_471390 [Arabidopsis lyrata subsp. lyrata]
Length = 71
Score = 120 bits (301), Expect = 6e-25
Identities = 55/70 (78%), Positives = 64/70 (91%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KG+ ISCDIPM QFI+N+N ++P SQKFIIHVLD+TH+FVQPHV +MIRSAIS+F
Sbjct: 1 MVNAIKGVFISCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 61 RDQNSYEKPT 70
>ref|XP_002313692.1| hypothetical protein POPTR_0009s14080g [Populus trichocarpa]
gi|222850100|gb|EEE87647.1| hypothetical protein
POPTR_0009s14080g [Populus trichocarpa]
Length = 70
Score = 120 bits (301), Expect = 6e-25
Identities = 55/69 (79%), Positives = 64/69 (92%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNATKGL ISCDIPM QFIINLNA+LPA QKF+IH+LD++H+FVQPHV EMIRSA ++F
Sbjct: 1 MVNATKGLFISCDIPMVQFIINLNASLPALQKFVIHILDSSHMFVQPHVSEMIRSATADF 60
Query: 493 RDQNSYEKP 467
R+QNSYEKP
Sbjct: 61 REQNSYEKP 69
>ref|NP_172702.1| nucleotide excision repair, TFIIH, subunit TTDA [Arabidopsis
thaliana] gi|38566546|gb|AAR24163.1| At1g12400
[Arabidopsis thaliana] gi|40823747|gb|AAR92302.1|
At1g12400 [Arabidopsis thaliana]
gi|332190754|gb|AEE28875.1| nucleotide excision repair,
TFIIH, subunit TTDA [Arabidopsis thaliana]
Length = 71
Score = 120 bits (300), Expect = 8e-25
Identities = 54/70 (77%), Positives = 64/70 (91%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KG+ +SCDIPM QFI+N+N ++P SQKFIIHVLD+TH+FVQPHV +MIRSAIS+F
Sbjct: 1 MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 61 RDQNSYEKPT 70
>ref|XP_004960540.1| PREDICTED: uncharacterized protein LOC101780092 [Setaria italica]
Length = 70
Score = 119 bits (297), Expect = 2e-24
Identities = 55/69 (79%), Positives = 62/69 (89%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KGL ISCDIPMAQFIINLNA++P S++FI+H+LD TH+FVQPHV EMIRS I EF
Sbjct: 1 MVNAIKGLFISCDIPMAQFIINLNASMPPSERFIVHMLDPTHMFVQPHVAEMIRSKIGEF 60
Query: 493 RDQNSYEKP 467
RDQNSYEKP
Sbjct: 61 RDQNSYEKP 69
>ref|XP_002440981.1| hypothetical protein SORBIDRAFT_09g018330 [Sorghum bicolor]
gi|241946266|gb|EES19411.1| hypothetical protein
SORBIDRAFT_09g018330 [Sorghum bicolor]
Length = 70
Score = 117 bits (293), Expect = 5e-24
Identities = 53/69 (76%), Positives = 63/69 (91%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KGL ISCD+PMAQFI+NLNA++PAS++FI+H+LD TH+FVQPHV EMIRS I+EF
Sbjct: 1 MVNAIKGLFISCDVPMAQFIVNLNASMPASERFIVHMLDPTHMFVQPHVAEMIRSKIAEF 60
Query: 493 RDQNSYEKP 467
DQNSYEKP
Sbjct: 61 WDQNSYEKP 69
>gb|EMT14713.1| General transcription factor IIH subunit 5 [Aegilops tauschii]
Length = 70
Score = 116 bits (290), Expect = 1e-23
Identities = 50/70 (71%), Positives = 65/70 (92%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KGL ISCDIPMAQFI+N+NA++PAS+KFI+H+LD TH+F+QP++G+ I+S ++EF
Sbjct: 1 MVNAIKGLFISCDIPMAQFIVNMNASMPASEKFIVHILDPTHMFIQPNMGDYIKSKMAEF 60
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 61 RDQNSYEKPT 70
>dbj|BAK07005.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 71
Score = 115 bits (288), Expect = 2e-23
Identities = 50/70 (71%), Positives = 64/70 (91%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNA KGL ISCDIPMAQFI+N+NA++PAS KFI+H+LD TH+F+QP++G+ I+S ++EF
Sbjct: 2 MVNAIKGLFISCDIPMAQFIVNMNASMPASDKFIVHILDPTHMFIQPNMGDYIKSKMAEF 61
Query: 493 RDQNSYEKPT 464
RDQNSYEKPT
Sbjct: 62 RDQNSYEKPT 71
>ref|XP_006584882.1| PREDICTED: general transcription factor IIH subunit 5-like [Glycine
max]
Length = 70
Score = 115 bits (287), Expect = 3e-23
Identities = 52/69 (75%), Positives = 63/69 (91%)
Frame = -3
Query: 673 MVNATKGLLISCDIPMAQFIINLNATLPASQKFIIHVLDNTHIFVQPHVGEMIRSAISEF 494
MVNATKG+ ISCDIPMAQ+IIN+NA+LPAS KFIIH+LDNTH+FVQPHV +MIRS I++F
Sbjct: 1 MVNATKGVFISCDIPMAQYIINMNASLPASDKFIIHILDNTHMFVQPHVEQMIRSRIAKF 60
Query: 493 RDQNSYEKP 467
R+ N+Y KP
Sbjct: 61 REDNTYVKP 69