BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00029524
         (462 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]   152   5e-35
ref|XP_007207044.1| hypothetical protein PRUPE_ppb025057mg [Prun...   147   2e-33
emb|CAN76603.1| hypothetical protein VITISV_012932 [Vitis vinifera]   147   2e-33
ref|XP_007198961.1| hypothetical protein PRUPE_ppa020671mg, part...   146   3e-33
emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera]   144   1e-32
ref|XP_007052567.1| Gag-pol polyprotein, putative [Theobroma cac...   142   4e-32
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                 141   1e-31
emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera]   137   2e-30
ref|XP_007019611.1| Uncharacterized protein TCM_035724 [Theobrom...   136   3e-30
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   136   3e-30
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   136   3e-30
gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subc...   135   5e-30
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   135   5e-30
gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Jap...   135   5e-30
gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Ja...   135   5e-30
ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobrom...   135   6e-30
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 135   8e-30
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]         135   8e-30
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     134   1e-29
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...   134   1e-29

>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score =  152 bits (384), Expect = 5e-35
 Identities = 82/163 (50%), Positives = 107/163 (65%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  GRKIVLLPSKEIGSQMPVQ------QPTSLLTQAKFEQEMTESRVVFALVSKAFKGLPA- 302
            GRK +L P KE+    P++      QP  +LT  +FE E  E+ V+FAL+++  +     
Sbjct: 522  GRKKILRPMKEVP---PIKKSNENAQPKKVLTMCQFENESKETXVIFALMARKVEEFKEQ 578

Query: 301  ---IPK*PQPLLQEFSDVFPEELSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKE 131
                P   + +L +FSD++P EL + LPP+RDIQH IDL P   LPN   YRM+P EH E
Sbjct: 579  DKEYPANARKILDDFSDLWPVELPNELPPMRDIQHAIDLIPGASLPNLPAYRMNPTEHAE 638

Query: 130  LQRQVEDLLSKGHIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
            L+RQV++LL+KG I+ESL  C VP LL PKKDGSWRMCVDSRA
Sbjct: 639  LKRQVDELLTKGFIRESLSPCGVPALLTPKKDGSWRMCVDSRA 681


>ref|XP_007207044.1| hypothetical protein PRUPE_ppb025057mg [Prunus persica]
           gi|462402686|gb|EMJ08243.1| hypothetical protein
           PRUPE_ppb025057mg [Prunus persica]
          Length = 317

 Score =  147 bits (371), Expect = 2e-33
 Identities = 83/151 (54%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
 Frame = -3

Query: 451 IVLLPSKE-IGSQMPVQQPTSLLTQAKFEQEMTESRVVFALVSKAFKGLPAIPK*PQPLL 275
           +VLLP KE +    P  +  + L  +KF +E  ES +V+ LVSK        P     LL
Sbjct: 16  LVLLPCKEELTRTSPQGEGNNFLNLSKFVKESEESGIVYMLVSKENVRDSEAPGVVHSLL 75

Query: 274 QEFSDVFPEELSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKG 95
           +EFSDV P++L   LPPLRDIQHQIDL P   L N+ HYRMS KEH+EL+R+V   LSKG
Sbjct: 76  EEFSDVLPDDLPSGLPPLRDIQHQIDLFPGASLLNKAHYRMSLKEHEELKRRV---LSKG 132

Query: 94  HIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
           +IKES+    VPTLL PKKDG+WRMCVDSRA
Sbjct: 133 YIKESMSPFAVPTLLTPKKDGTWRMCVDSRA 163


>emb|CAN76603.1| hypothetical protein VITISV_012932 [Vitis vinifera]
          Length = 1027

 Score =  147 bits (370), Expect = 2e-33
 Identities = 80/160 (50%), Positives = 105/160 (65%), Gaps = 7/160 (4%)
 Frame = -3

Query: 460 GRKIVLLPSKEIGSQMPVQ---QPTSLLTQAKFEQEMTESRVVFALVSKAFKGLPAIPK* 290
           GRK +L   KE+     ++   QP  +LT+ +FE E  E++V+F L+++  +      K 
Sbjct: 189 GRKKILRLMKEVPLIKKLEEEAQPKKVLTKCQFENESKETKVIFVLMARKVEEFKEQDKE 248

Query: 289 ----PQPLLQEFSDVFPEELSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQR 122
                + +L +FSD++P EL + LPPLRDIQH IDL P   LPN   YRM+P EH EL+R
Sbjct: 249 YLANVRKILDDFSDLWPGELPNQLPPLRDIQHAIDLIPGASLPNLPTYRMNPTEHAELKR 308

Query: 121 QVEDLLSKGHIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
           QV++LL+KG I ESL  C VP LL PKKDGSWRMCVDSRA
Sbjct: 309 QVDELLTKGFIHESLSPCGVPALLTPKKDGSWRMCVDSRA 348


>ref|XP_007198961.1| hypothetical protein PRUPE_ppa020671mg, partial [Prunus persica]
           gi|462394256|gb|EMJ00160.1| hypothetical protein
           PRUPE_ppa020671mg, partial [Prunus persica]
          Length = 1460

 Score =  146 bits (368), Expect = 3e-33
 Identities = 75/134 (55%), Positives = 91/134 (67%), Gaps = 3/134 (2%)
 Frame = -3

Query: 394 SLLTQAKFEQEMTESRVVFALVSKAFKGLPAIPK*PQPL---LQEFSDVFPEELSDSLPP 224
           +LL+  +FE+E  E+ VVFALV K     P+  + P+PL   L EFSDV P++L + LPP
Sbjct: 565 ALLSYGEFEKESLETGVVFALVIKEISAAPSYQQ-PEPLHQFLNEFSDVMPDDLPNELPP 623

Query: 223 LRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLIP 44
           +RDIQH IDL P   LPN  HYRM+  EH EL  Q++ LL KG I+ SL  C VP L  P
Sbjct: 624 MRDIQHAIDLVPGSQLPNLPHYRMNSSEHAELNTQIQGLLDKGFIRHSLSPCAVPVLFTP 683

Query: 43  KKDGSWRMCVDSRA 2
           KKDGSWRMCVDSRA
Sbjct: 684 KKDGSWRMCVDSRA 697


>emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera]
          Length = 1292

 Score =  144 bits (363), Expect = 1e-32
 Identities = 78/163 (47%), Positives = 105/163 (64%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460 GRKIVLLPSKEIGSQMPVQ------QPTSLLTQAKFEQEMTESRVVFALVSKAFKGLPA- 302
           G K +L P KE+    P++      QP  +L+  +FE E  E++V+FAL+++  +     
Sbjct: 440 GCKTILRPMKEVS---PIKKSDENAQPKKVLSMCQFENESKETKVIFALMARKVEESKEQ 496

Query: 301 ---IPK*PQPLLQEFSDVFPEELSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKE 131
               P   + +L +FSD +P EL + LPP+RD+QH IDL P   LPN   YRM+P EH E
Sbjct: 497 DKEYPANVRKILDDFSDFWPTELPNQLPPMRDVQHAIDLIPGASLPNLPAYRMNPTEHAE 556

Query: 130 LQRQVEDLLSKGHIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
           L+RQV++LL+KG I+ESL    VP LL PKKDGSWRMCVDSRA
Sbjct: 557 LKRQVDELLTKGFIRESLSPYGVPALLTPKKDGSWRMCVDSRA 599


>ref|XP_007052567.1| Gag-pol polyprotein, putative [Theobroma cacao]
           gi|508704828|gb|EOX96724.1| Gag-pol polyprotein,
           putative [Theobroma cacao]
          Length = 794

 Score =  142 bits (359), Expect = 4e-32
 Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
 Frame = -3

Query: 460 GRKIVLLPSKEIGSQMPVQQPTSLLTQAKFEQEMTESRVVFAL-VSKAFKGLPAIPK*PQ 284
           G KI+L P K        ++  +L+T +   +   +S +++ L V +  +    + K  +
Sbjct: 492 GAKIMLTPLKPEDCPKKQEKDKALITMSGLNKAFRKSSLLYLLLVCEENEVSSPLSKDVK 551

Query: 283 PLLQEFSDVFPEELSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLL 104
           P+++EF DV PEE+   LPP+RDIQH ID  P  ++PN+  YRMSP+EHKELQ QV+ LL
Sbjct: 552 PIIEEFCDVVPEEIPHGLPPMRDIQHAIDFIPGSIIPNKPAYRMSPQEHKELQHQVKQLL 611

Query: 103 SKGHIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
            KG ++ES+  C VP LL+PKKDG+WRMC+DSRA
Sbjct: 612 EKGLVRESVSPCAVPALLVPKKDGTWRMCIDSRA 645


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score =  141 bits (355), Expect = 1e-31
 Identities = 74/160 (46%), Positives = 99/160 (61%), Gaps = 8/160 (5%)
 Frame = -3

Query: 457 RKIVLLPSKEI------GSQMPVQQPTSLLTQAKFEQEMTESRVVFALVSK--AFKGLPA 302
           RK++L P   +       S +   +   L+ +A+  QE+     V+AL++K   F    +
Sbjct: 503 RKVILTPLPPVLKHTTPPSMLEPSKEVLLINEAEMLQELKGDEDVYALIAKDVVFGQNVS 562

Query: 301 IPK*PQPLLQEFSDVFPEELSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQR 122
           +PK  Q LLQ + DVFP EL   LPPLR I+HQID  P   LPN+  YR  PK  +ELQ+
Sbjct: 563 LPKEVQELLQSYEDVFPNELPSGLPPLRGIEHQIDFIPGATLPNKAAYRSDPKATQELQQ 622

Query: 121 QVEDLLSKGHIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
           Q+ +L+SKG ++ESL  C VP LL+PKKDGSWRMC DSRA
Sbjct: 623 QIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRA 662


>emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera]
          Length = 1323

 Score =  137 bits (345), Expect = 2e-30
 Identities = 75/158 (47%), Positives = 99/158 (62%), Gaps = 6/158 (3%)
 Frame = -3

Query: 457 RKIVLLPSKEIGSQMPVQ------QPTSLLTQAKFEQEMTESRVVFALVSKAFKGLPAIP 296
           RK +L P KE+    P++      QP  +LT  +FE E  E++V+FAL+++  +      
Sbjct: 426 RKKILRPMKEVP---PIKKSNENAQPKKVLTMCQFENESKETKVIFALMARKVEEF---- 478

Query: 295 K*PQPLLQEFSDVFPEELSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQV 116
                  +E    +P  L + LPP+RD+QH IDL P   LPN   YRM+P EH EL+RQV
Sbjct: 479 -------KEQDKEYPANLPNQLPPMRDVQHAIDLIPGASLPNLXAYRMNPTEHXELKRQV 531

Query: 115 EDLLSKGHIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
           ++LL+K  I+ESL  C VPTLL PKKDGSWRMCVDSRA
Sbjct: 532 DELLTKCFIRESLSPCGVPTLLTPKKDGSWRMCVDSRA 569


>ref|XP_007019611.1| Uncharacterized protein TCM_035724 [Theobroma cacao]
           gi|508724939|gb|EOY16836.1| Uncharacterized protein
           TCM_035724 [Theobroma cacao]
          Length = 475

 Score =  136 bits (342), Expect = 3e-30
 Identities = 72/141 (51%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
 Frame = -3

Query: 409 VQQPTSLLTQAKFEQEMTESRVVFALVSKAFKG-----LPAIPK*PQPLLQEFSDVFPEE 245
           + + T  L+   FE E +E  +++ALV+K  K       P  P   Q LL+EF ++F E+
Sbjct: 68  ISKITGYLSAENFEAEGSEMGIMYALVTKHLKSDQMSKSPQYPTEIQQLLKEFGELFNED 127

Query: 244 LSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCV 65
           L  SLPPLR IQH IDL P   LPN   YRM P +  E+QRQVE+LL KG ++ES   C 
Sbjct: 128 LPKSLPPLRSIQHAIDLVPGAALPNLPAYRMPPMQRAEVQRQVEELLEKGLVRESKSPCA 187

Query: 64  VPTLLIPKKDGSWRMCVDSRA 2
            P LL PKKDGSWRMCVDSRA
Sbjct: 188 CPALLAPKKDGSWRMCVDSRA 208


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  136 bits (342), Expect = 3e-30
 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 5/135 (3%)
 Frame = -3

Query: 391 LLTQAKFEQEMTESRVVFALVSKA----FKGLP-AIPK*PQPLLQEFSDVFPEELSDSLP 227
           + T++  ++  T++ V +ALV K      +  P ++P     LLQE++D+FP+E+   LP
Sbjct: 566 IATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLP 625

Query: 226 PLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLI 47
           P+R I+HQIDL P   LPNR  YR +P+E KE+QRQV++LL KG+++ESL  C VP LL+
Sbjct: 626 PIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLV 685

Query: 46  PKKDGSWRMCVDSRA 2
           PKKDGSWRMCVD RA
Sbjct: 686 PKKDGSWRMCVDCRA 700


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  136 bits (342), Expect = 3e-30
 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 5/135 (3%)
 Frame = -3

Query: 391  LLTQAKFEQEMTESRVVFALVSKA----FKGLP-AIPK*PQPLLQEFSDVFPEELSDSLP 227
            + T++  ++  T++ V +ALV K      +  P ++P     LLQE++D+FP+E+   LP
Sbjct: 670  IATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLP 729

Query: 226  PLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLI 47
            P+R I+HQIDL P   LPNR  YR +P+E KE+QRQV++LL KG+++ESL  C VP LL+
Sbjct: 730  PIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLV 789

Query: 46   PKKDGSWRMCVDSRA 2
            PKKDGSWRMCVD RA
Sbjct: 790  PKKDGSWRMCVDCRA 804


>gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1392

 Score =  135 bits (341), Expect = 5e-30
 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 5/135 (3%)
 Frame = -3

Query: 391 LLTQAKFEQEMTESRVVFALVSKA----FKGLP-AIPK*PQPLLQEFSDVFPEELSDSLP 227
           + T++  ++  T++ V +ALV K      +  P ++P     LLQE++D+FP+E+   LP
Sbjct: 519 IATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLP 578

Query: 226 PLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLI 47
           P+R I+HQIDL P   LPNR  YR +P+E KE+QRQV++LL KG+++ESL  C VP LL+
Sbjct: 579 PIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVLLV 638

Query: 46  PKKDGSWRMCVDSRA 2
           PKKDGSWRMCVD RA
Sbjct: 639 PKKDGSWRMCVDCRA 653


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  135 bits (341), Expect = 5e-30
 Identities = 67/135 (49%), Positives = 95/135 (70%), Gaps = 5/135 (3%)
 Frame = -3

Query: 391  LLTQAKFEQEMTESRVVFALVSKA----FKGLP-AIPK*PQPLLQEFSDVFPEELSDSLP 227
            + T++  ++  T++ V +ALV K      +  P ++P     LLQE++D+FP+E+   LP
Sbjct: 670  IATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLP 729

Query: 226  PLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLI 47
            P+R I+HQIDL P   LPNR  YR +P+E KE+QRQV++LL KG+++ESL  C +P LL+
Sbjct: 730  PIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSIPVLLV 789

Query: 46   PKKDGSWRMCVDSRA 2
            PKKDGSWRMCVD RA
Sbjct: 790  PKKDGSWRMCVDCRA 804


>gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1357

 Score =  135 bits (341), Expect = 5e-30
 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 5/135 (3%)
 Frame = -3

Query: 391 LLTQAKFEQEMTESRVVFALVSKA----FKGLP-AIPK*PQPLLQEFSDVFPEELSDSLP 227
           + T++  ++  T++ V +ALV K      +  P ++P     LLQE++D+FP+E+   LP
Sbjct: 484 IATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLP 543

Query: 226 PLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLI 47
           P+R I+HQIDL P   LPNR  YR +P+E KE+QRQV++LL KG+++ESL  C VP LL+
Sbjct: 544 PIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVLLV 603

Query: 46  PKKDGSWRMCVDSRA 2
           PKKDGSWRMCVD RA
Sbjct: 604 PKKDGSWRMCVDCRA 618


>gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1450

 Score =  135 bits (341), Expect = 5e-30
 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 5/135 (3%)
 Frame = -3

Query: 391 LLTQAKFEQEMTESRVVFALVSKA----FKGLP-AIPK*PQPLLQEFSDVFPEELSDSLP 227
           + T++  ++  T++ V +ALV K      +  P ++P     LLQE++D+FP+E+   LP
Sbjct: 577 IATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPLGLP 636

Query: 226 PLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLI 47
           P+R I+HQIDL P   LPNR  YR +P+E KE+QRQV++LL KG+++ESL  C VP LL+
Sbjct: 637 PIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVLLV 696

Query: 46  PKKDGSWRMCVDSRA 2
           PKKDGSWRMCVD RA
Sbjct: 697 PKKDGSWRMCVDCRA 711


>ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobroma cacao]
           gi|508727408|gb|EOY19305.1| Uncharacterized protein
           TCM_044370 [Theobroma cacao]
          Length = 1306

 Score =  135 bits (340), Expect = 6e-30
 Identities = 72/141 (51%), Positives = 89/141 (63%), Gaps = 5/141 (3%)
 Frame = -3

Query: 409 VQQPTSLLTQAKFEQEMTESRVVFALVSKAFKG-----LPAIPK*PQPLLQEFSDVFPEE 245
           + + T  L+   FE E +E  +++ALV+K  K       P  P   Q LL+EF ++F E+
Sbjct: 460 INKITGYLSVENFEAEGSEMGIMYALVTKHLKSDQMGKSPQYPTEIQQLLKEFGELFNED 519

Query: 244 LSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCV 65
           L  SLPPLR IQH IDL P   LPN   YRM P +  E+QRQVE+LL KG ++ES   C 
Sbjct: 520 LPKSLPPLRSIQHAIDLVPGAALPNLPAYRMPPMQRVEVQRQVEELLEKGLVRESKSPCA 579

Query: 64  VPTLLIPKKDGSWRMCVDSRA 2
            P LL PKKDGSWRMCVDSRA
Sbjct: 580 CPALLAPKKDGSWRMCVDSRA 600


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score =  135 bits (339), Expect = 8e-30
 Identities = 70/161 (43%), Positives = 102/161 (63%), Gaps = 8/161 (4%)
 Frame = -3

Query: 460 GRKIVLLP----SKEIGSQMPVQQPTSLL--TQAKFEQEMTESRVVFALVSKAF--KGLP 305
           G+K+ L P     ++ GS    ++ + +L  ++A   +E+ +++ V  L+S+    +   
Sbjct: 514 GKKVTLTPLPPNQRDYGSPNVPEEMSGVLFLSEAAMIKEIRQAQPVLMLLSREVNQEENT 573

Query: 304 AIPK*PQPLLQEFSDVFPEELSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQ 125
            +P    PL+Q F +VFP+EL   LPPLR I+H IDL P  VLPN+  YR  P   KELQ
Sbjct: 574 VVPTAVAPLIQRFQEVFPDELPSGLPPLRGIEHHIDLVPGSVLPNKPAYRCDPNATKELQ 633

Query: 124 RQVEDLLSKGHIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
            Q+E+L++KG ++ESL  C VP LL+PKKDG+WRMC DSRA
Sbjct: 634 HQIEELMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSRA 674


>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  135 bits (339), Expect = 8e-30
 Identities = 67/135 (49%), Positives = 95/135 (70%), Gaps = 5/135 (3%)
 Frame = -3

Query: 391 LLTQAKFEQEMTESRVVFALVSKA----FKGLP-AIPK*PQPLLQEFSDVFPEELSDSLP 227
           + T++  ++  T++ V +ALV K      +  P ++P     LLQE++D+FP+E+   LP
Sbjct: 303 IATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLP 362

Query: 226 PLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLI 47
           P+R I+HQIDL P   LPNR  YR +P+E KE+QRQ+++LL KG+++ESL  C VP LL+
Sbjct: 363 PIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQMQELLDKGYVRESLSPCSVPVLLV 422

Query: 46  PKKDGSWRMCVDSRA 2
           PKKDGSWRMCVD RA
Sbjct: 423 PKKDGSWRMCVDCRA 437


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  134 bits (338), Expect = 1e-29
 Identities = 67/120 (55%), Positives = 84/120 (70%), Gaps = 4/120 (3%)
 Frame = -3

Query: 349  RVVFALVSK----AFKGLPAIPK*PQPLLQEFSDVFPEELSDSLPPLRDIQHQIDLAPCV 182
            +V+F LV K    +   L ++P     +LQE+ DVFPEE    LPPLR I+HQIDL P  
Sbjct: 660  QVLFILVCKDTLLSANDLTSVPSVVARVLQEYEDVFPEETPVGLPPLRGIEHQIDLIPGA 719

Query: 181  VLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCVVPTLLIPKKDGSWRMCVDSRA 2
             LPNR  YR +P+E KE+QRQV+ LL KG+++ESL  C VP +L+PKKDGSWRMCVD RA
Sbjct: 720  TLPNRPAYRTNPEETKEIQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRA 779


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 1452

 Score =  134 bits (337), Expect = 1e-29
 Identities = 71/141 (50%), Positives = 88/141 (62%), Gaps = 5/141 (3%)
 Frame = -3

Query: 409 VQQPTSLLTQAKFEQEMTESRVVFALVSKAFKG-----LPAIPK*PQPLLQEFSDVFPEE 245
           + + T  L+   FE E +E  +++ALV+K  K       P  P   Q LL+EF ++F E+
Sbjct: 459 ISKITRYLSAENFEAEGSEMGIMYALVTKHLKSDQMSKSPQYPTEIQQLLKEFGELFNED 518

Query: 244 LSDSLPPLRDIQHQIDLAPCVVLPNRRHYRMSPKEHKELQRQVEDLLSKGHIKESLRSCV 65
           L  SLPPLR IQH IDL P   LPN   YRM P +  E+QRQVE+L  KG ++ES   C 
Sbjct: 519 LPKSLPPLRSIQHAIDLVPGAALPNLPAYRMPPMQRAEVQRQVEELFEKGLVRESKSPCA 578

Query: 64  VPTLLIPKKDGSWRMCVDSRA 2
            P LL PKKDGSWRMCVDSRA
Sbjct: 579 CPALLAPKKDGSWRMCVDSRA 599