BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00028977
         (956 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   290   6e-76
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   271   3e-70
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   271   3e-70
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           266   1e-68
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   264   3e-68
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   253   6e-65
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   249   1e-63
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   246   7e-63
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   246   1e-62
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   245   2e-62
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   243   8e-62
gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus...   235   2e-59
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   231   4e-58
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   226   1e-56
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   225   2e-56
ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr...   214   5e-53
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   212   2e-52
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   212   2e-52
gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Tritic...   211   3e-52
gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilo...   211   5e-52

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  290 bits (742), Expect = 6e-76
 Identities = 142/219 (64%), Positives = 176/219 (80%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLF 516
           W TLP F P  +A+S+ K LS  R   N  + T+  S TALKWV+ CCP+LPR+LVQKLF
Sbjct: 56  WFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLVQKLF 115

Query: 515 RLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQRKE 336
           RLRQVRRES    ++   S++G ++++HRL+RV+AKD MN+GD I LP+TV+EFPS++ E
Sbjct: 116 RLRQVRRES----YNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEFPSEKHE 171

Query: 335 CPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPPR 156
             CN++EI ++ +LE+YKD AIIVVNKPPG+PVQGGIGI +SLD LAATYLR D  EPPR
Sbjct: 172 YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPR 231

Query: 155 LVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGASNN 39
           LVHRLDRDSSGIL+MGRTQ S T+LHS+FREKTFGASNN
Sbjct: 232 LVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNN 270


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395210|gb|EMJ01009.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  271 bits (693), Expect = 3e-70
 Identities = 151/269 (56%), Positives = 178/269 (66%), Gaps = 13/269 (4%)
 Frame = -1

Query: 806 RTCNSFFLNERFAHQYTTASIFSREESDXXXXXXXXKWLTLPPFNPTSNAASVAKFLSEC 627
           R C S F N R    Y T   F  +            W TLPPF  T N +++ K LS  
Sbjct: 21  RLCISAFHNWR---SYATTETFHEDREKRGEK-----WFTLPPFTATINGSALGKELSRN 72

Query: 626 RVVGNQ------KHETSSTSMTALKWVLHCCPRLPRTLVQKLFRLRQVRRESLDSSHSTS 465
           R  G           T+ST+ TALKWV  CCP LPR+LVQKLFRLRQVRRES D      
Sbjct: 73  RSYGRDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVRRESCDME---- 128

Query: 464 ASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQR-------KECPCNEDEIKY 306
            S  G ++ +  L+RV+AKD MN+GD I LP++VQEFP+ +       KEC C+E+E+ +
Sbjct: 129 CSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTF 188

Query: 305 IRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPPRLVHRLDRDSS 126
           IRSLE+YKD AIIV+NKPPGMPVQGGIGI +SLD LAA  L  D  EPPRLVHRLDRDSS
Sbjct: 189 IRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSS 248

Query: 125 GILVMGRTQASTTLLHSVFREKTFGASNN 39
           GILVMGRTQ S T+LHS+FREKTFGASN+
Sbjct: 249 GILVMGRTQTSATVLHSIFREKTFGASND 277


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
           gi|462395209|gb|EMJ01008.1| hypothetical protein
           PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  271 bits (693), Expect = 3e-70
 Identities = 151/269 (56%), Positives = 178/269 (66%), Gaps = 13/269 (4%)
 Frame = -1

Query: 806 RTCNSFFLNERFAHQYTTASIFSREESDXXXXXXXXKWLTLPPFNPTSNAASVAKFLSEC 627
           R C S F N R    Y T   F  +            W TLPPF  T N +++ K LS  
Sbjct: 21  RLCISAFHNWR---SYATTETFHEDREKRGEK-----WFTLPPFTATINGSALGKELSRN 72

Query: 626 RVVGNQ------KHETSSTSMTALKWVLHCCPRLPRTLVQKLFRLRQVRRESLDSSHSTS 465
           R  G           T+ST+ TALKWV  CCP LPR+LVQKLFRLRQVRRES D      
Sbjct: 73  RSYGRDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVRRESCDME---- 128

Query: 464 ASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQR-------KECPCNEDEIKY 306
            S  G ++ +  L+RV+AKD MN+GD I LP++VQEFP+ +       KEC C+E+E+ +
Sbjct: 129 CSGEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTF 188

Query: 305 IRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPPRLVHRLDRDSS 126
           IRSLE+YKD AIIV+NKPPGMPVQGGIGI +SLD LAA  L  D  EPPRLVHRLDRDSS
Sbjct: 189 IRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSS 248

Query: 125 GILVMGRTQASTTLLHSVFREKTFGASNN 39
           GILVMGRTQ S T+LHS+FREKTFGASN+
Sbjct: 249 GILVMGRTQTSATVLHSIFREKTFGASND 277


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  266 bits (679), Expect = 1e-68
 Identities = 136/220 (61%), Positives = 164/220 (74%), Gaps = 1/220 (0%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETS-STSMTALKWVLHCCPRLPRTLVQKL 519
           W TLPP   T + A + K ++  +    +  + S S + TALKWV+ CCP LPR+LVQKL
Sbjct: 49  WFTLPPHTATVDGAVLGKAIAGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQKL 108

Query: 518 FRLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQRK 339
           FRLRQVRRES +     +   LG      RLRRVSAKD +N+GD IFLP++V+E P ++K
Sbjct: 109 FRLRQVRRESFNVEDCNAGDQLGKP----RLRRVSAKDSLNLGDKIFLPISVKELPVEKK 164

Query: 338 ECPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPP 159
           EC CNE+E+K+IRSLE+YKD AI+VVNKPPG+PVQGGIGI  SLD LA T L  D  EPP
Sbjct: 165 ECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPP 224

Query: 158 RLVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGASNN 39
           RLVHRLDRD SGILVMGRTQ S T+LHS+FREKTFGASN+
Sbjct: 225 RLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASND 264


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           gi|550331407|gb|EEE87831.2| hypothetical protein
           POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  264 bits (675), Expect = 3e-68
 Identities = 145/273 (53%), Positives = 181/273 (66%)
 Frame = -1

Query: 857 LFGRASLRSSNSREFAFRTCNSFFLNERFAHQYTTASIFSREESDXXXXXXXXKWLTLPP 678
           L GR  L+ S S      T  S         +YTT    + +  +        KW TLPP
Sbjct: 8   LLGRVLLQPSRSISSLHATKPSISTVRVLQSRYTT----NTKSQNHYENDKRGKWFTLPP 63

Query: 677 FNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLFRLRQVR 498
           +  T N + +   LS  R+      ET     TALKWVL CCP LPR LVQKLFRLRQVR
Sbjct: 64  YTSTINGSVLGIALS-ARIPAKSASET-----TALKWVLRCCPELPRNLVQKLFRLRQVR 117

Query: 497 RESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQRKECPCNED 318
           RES        + NLG + ++HRL+RV+AKD M++GD IFLP++V+  P+++++C CNE+
Sbjct: 118 RES----PVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEKQDCHCNEE 173

Query: 317 EIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPPRLVHRLD 138
           EI +IR LE+YKD+AIIVVNKPPGMPVQGGIGI +SLD L+A+   SD  EPPRLVHRLD
Sbjct: 174 EINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLD 233

Query: 137 RDSSGILVMGRTQASTTLLHSVFREKTFGASNN 39
           RD SGILVMGRTQ S T+LH++FREKT  ASN+
Sbjct: 234 RDCSGILVMGRTQTSATVLHAIFREKTLAASND 266


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  253 bits (647), Expect = 6e-65
 Identities = 136/249 (54%), Positives = 169/249 (67%), Gaps = 5/249 (2%)
 Frame = -1

Query: 770 AHQYTTASIF-----SREESDXXXXXXXXKWLTLPPFNPTSNAASVAKFLSECRVVGNQK 606
           +H +TT +I      +++++         K+ TLPP+  T + +++ K LS         
Sbjct: 98  SHYFTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGSALGKALSATATA---- 153

Query: 605 HETSSTSMTALKWVLHCCPRLPRTLVQKLFRLRQVRRESLDSSHSTSASNLGTKSEDHRL 426
              +ST  TALKWVL CCP LPR LVQKLFRLRQV+RE L         N+G    +H+ 
Sbjct: 154 --KASTETTALKWVLRCCPELPRNLVQKLFRLRQVKRELL---------NVGDGEMEHKT 202

Query: 425 RRVSAKDGMNIGDVIFLPVTVQEFPSQRKECPCNEDEIKYIRSLEVYKDSAIIVVNKPPG 246
           +RV+AKD MN+GD IFLP++VQ  P ++++C C E E  +IR LE+YKD AIIVVNKPPG
Sbjct: 203 KRVAAKDLMNVGDRIFLPISVQALPFEKQKCHCGEKEANFIRGLELYKDEAIIVVNKPPG 262

Query: 245 MPVQGGIGIMKSLDLLAATYLRSDSLEPPRLVHRLDRDSSGILVMGRTQASTTLLHSVFR 66
           MPVQGGIGI  S D LAA+ L  D  EPPRLVHRLDRDSSGILVMGRTQ ST +LHSVFR
Sbjct: 263 MPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFR 322

Query: 65  EKTFGASNN 39
           EKTF ASN+
Sbjct: 323 EKTFAASNH 331


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
           gi|557524859|gb|ESR36165.1| hypothetical protein
           CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  249 bits (635), Expect = 1e-63
 Identities = 135/219 (61%), Positives = 165/219 (75%), Gaps = 2/219 (0%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLF 516
           W TLPPF  T + +++ + L+ C      K   S T  TALKWVL CCP LPR  VQKLF
Sbjct: 81  WFTLPPFTSTIDGSALGRQLA-CP----SKSPISET--TALKWVLQCCPGLPRNFVQKLF 133

Query: 515 RLRQVRRES--LDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQR 342
           RL QVRRES  LDSS     +N G + E  +L+RV+AKD + +GD IFLP+++QE PS++
Sbjct: 134 RLSQVRRESPSLDSS-----ANEGHEQEI-KLKRVAAKDSLKLGDRIFLPISIQESPSRK 187

Query: 341 KECPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEP 162
           ++CPC E+E+ +I+SLE+YKDSAIIV+NKP GMPVQGGIGI +S+D LAAT L  D  EP
Sbjct: 188 EKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEP 247

Query: 161 PRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGAS 45
           PRLVHRLDRDSSGILVMGRTQ S T+LHS+FREKTF AS
Sbjct: 248 PRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSAS 286


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 476

 Score =  246 bits (629), Expect = 7e-63
 Identities = 132/223 (59%), Positives = 160/223 (71%), Gaps = 3/223 (1%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHE--TSSTSMTALKWVLHCCPRLPRTLVQK 522
           W TLPPF  T N A++ + LS  R VG   +   +++ + TALKWV  CCP +PR LVQK
Sbjct: 52  WFTLPPFTDTVNGAALGRELS--RSVGRDVYAKPSAAAATTALKWVTRCCPEIPRNLVQK 109

Query: 521 LFRLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQR 342
           LFRLRQVRRE+ D   S              L+RV  KD MN+GD I LP++V+EFP  +
Sbjct: 110 LFRLRQVRREASDMDQSVQP-----------LKRVGTKDSMNLGDRICLPISVKEFPDHK 158

Query: 341 -KECPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLE 165
            KE  C+E+E ++IRSL +YKD AIIV+NKPPG+PVQGGIGI +SLD LAAT L  D  +
Sbjct: 159 QKEGHCSEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSLDELAATCLSYDLSQ 218

Query: 164 PPRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGASNNV 36
           PPRLVHRLDRD SGILVMGRTQ S T+LHSVFREKTFGAS++V
Sbjct: 219 PPRLVHRLDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDV 261


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Solanum tuberosum]
          Length = 467

 Score =  246 bits (628), Expect = 1e-62
 Identities = 133/245 (54%), Positives = 171/245 (69%), Gaps = 1/245 (0%)
 Frame = -1

Query: 773 FAHQYTTASIFSREESDXXXXXXXXKWLTLPPFNPTSNAASVAKFLSECRVVGNQKHETS 594
           +A   T A + +R E++         WLTLPPF  T N A++ + L+  ++      E S
Sbjct: 38  YATTVTAAQVCNRNENEKAK------WLTLPPFTATVNGAALGRELAGVKM---DVKENS 88

Query: 593 STSMTALKWVLHCCPRLPRTLVQKLFRLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVS 414
           + +MTALKWV  CCP LP++LVQKLFRLRQVRR+S         SN+    E+ R +RVS
Sbjct: 89  TNTMTALKWVQRCCPELPKSLVQKLFRLRQVRRDS---------SNV----EEQRPKRVS 135

Query: 413 AKDGMNIGDVIFLPVTVQEFPSQRKEC-PCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPV 237
           AK+ MN+GD IFLP+TVQ+FPS++    P +E+E K++ SLE+YKD  I+VVNKPPGMPV
Sbjct: 136 AKESMNVGDRIFLPITVQKFPSEKVVYYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPV 195

Query: 236 QGGIGIMKSLDLLAATYLRSDSLEPPRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKT 57
           QGGIGI +SLD LAA Y+R +  E PRLVHRLDRD SG+LVMGRTQ S + LHS+FREKT
Sbjct: 196 QGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKT 255

Query: 56  FGASN 42
           F + N
Sbjct: 256 FDSQN 260


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
           gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
           synthase, putative [Theobroma cacao]
          Length = 477

 Score =  245 bits (625), Expect = 2e-62
 Identities = 129/219 (58%), Positives = 156/219 (71%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLF 516
           W TLPPF  T NA+ +   LS       + H  ++   TA+KWV+ CCP LPR+LVQKLF
Sbjct: 63  WFTLPPFTKTVNASVLGAKLS------GKPHSKAANETTAVKWVMRCCPELPRSLVQKLF 116

Query: 515 RLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQRKE 336
           RLRQVRRES    H    +  G + +  +L+RV AKD +NIGD IFLP +V+EF  +++E
Sbjct: 117 RLRQVRRES----HVLEVAGDGCQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREEKQE 172

Query: 335 CPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPPR 156
             C E+E+ +IR LE+YKD AIIV+NKPPGMPVQGGIGI  SLD LAA  L  D  EPPR
Sbjct: 173 SGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPR 232

Query: 155 LVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGASNN 39
           LVHRLDRDSSGILVMGRTQ S T+LHSVFRE+T  AS +
Sbjct: 233 LVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKD 271


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
           lycopersicum]
          Length = 467

 Score =  243 bits (620), Expect = 8e-62
 Identities = 133/245 (54%), Positives = 170/245 (69%), Gaps = 1/245 (0%)
 Frame = -1

Query: 773 FAHQYTTASIFSREESDXXXXXXXXKWLTLPPFNPTSNAASVAKFLSECRVVGNQKHETS 594
           +A   T A + +R E++         WLTLPPF    N A++ + L+  ++  N   E S
Sbjct: 38  YATTVTDAQVCNRNENEKAK------WLTLPPFTAAVNGAALGRELAGVKMDVN---ENS 88

Query: 593 STSMTALKWVLHCCPRLPRTLVQKLFRLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVS 414
           + +MTALKWV  CCP LP++LVQKLFRLRQVRR+S         SN+    E+ R +RVS
Sbjct: 89  TNTMTALKWVQRCCPELPKSLVQKLFRLRQVRRDS---------SNV----EEQRPKRVS 135

Query: 413 AKDGMNIGDVIFLPVTVQEFPSQRKEC-PCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPV 237
           AK+ MN+GD IFLP+TVQ+FPS++    P +E+E K++ SLE+YKD+ IIVVNKPPGMPV
Sbjct: 136 AKESMNVGDRIFLPITVQKFPSEKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPV 195

Query: 236 QGGIGIMKSLDLLAATYLRSDSLEPPRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKT 57
           QGGIGI +SLD LAA Y+     E PRLVHRLDRD SG+LVMGRTQ S + LHS+FREKT
Sbjct: 196 QGGIGIKRSLDELAAKYMSHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKT 255

Query: 56  FGASN 42
           F + N
Sbjct: 256 FDSQN 260


>gb|EYU42699.1| hypothetical protein MIMGU_mgv1a006097mg [Mimulus guttatus]
          Length = 457

 Score =  235 bits (600), Expect = 2e-59
 Identities = 134/228 (58%), Positives = 159/228 (69%), Gaps = 8/228 (3%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLF 516
           WLTLPPFNP ++  S+ K LS          + +    TALKW+L CCP +PR LVQKLF
Sbjct: 47  WLTLPPFNPNADGCSIGKRLSG---------QPADAKTTALKWILKCCPHIPRCLVQKLF 97

Query: 515 RLRQV-----RRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQ-EF 354
           RLRQV     R+ES         SN+  K +  R +R+ AKD M+IGD IFLP +V    
Sbjct: 98  RLRQVHFLLIRKES---------SNMEDKEQ--RPKRIGAKDLMDIGDRIFLPKSVDGTS 146

Query: 353 PSQRKECP--CNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLR 180
           PS   E     +E E++++RSLE+YKD AIIV+NKPPG+PVQGGIGI +SLD LAA YL+
Sbjct: 147 PSTTAESRNFFDEKEMEFVRSLELYKDPAIIVINKPPGLPVQGGIGIKRSLDELAAKYLK 206

Query: 179 SDSLEPPRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGASNNV 36
            D  E PRLVHRLDRDSSGILVMGRTQ STT+LHSVFREKTFGASNNV
Sbjct: 207 FDFTESPRLVHRLDRDSSGILVMGRTQLSTTILHSVFREKTFGASNNV 254


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
           gi|548850328|gb|ERN08832.1| hypothetical protein
           AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  231 bits (588), Expect = 4e-58
 Identities = 123/220 (55%), Positives = 158/220 (71%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLF 516
           W TLP F   S + S++   +             + S TALKWVL CCP++PR+L+QKLF
Sbjct: 49  WFTLPSFPGASLSPSISTAKT-----------AKAPSTTALKWVLRCCPQVPRSLIQKLF 97

Query: 515 RLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQRKE 336
           RLRQVR+ESL+ +    AS L  +++  +++RV AKD +N GD IFLP+TV        +
Sbjct: 98  RLRQVRKESLNPA---IASCLHKQAQYQQIKRVFAKDTLNSGDRIFLPITVNPAVEVEDD 154

Query: 335 CPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPPR 156
             CN++E++YIRSLEVYKD+AI+VVNKPPG+PVQGG G+  SLD+L A+ L+ D  E PR
Sbjct: 155 YICNKEEMEYIRSLEVYKDAAIVVVNKPPGLPVQGGTGVKLSLDVLVASSLKYDYSEVPR 214

Query: 155 LVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGASNNV 36
           LVHRLD+DSSGILVMGRTQ STTLLHS+FR+KT GAS NV
Sbjct: 215 LVHRLDQDSSGILVMGRTQESTTLLHSIFRDKTCGASFNV 254


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 466

 Score =  226 bits (576), Expect = 1e-56
 Identities = 116/219 (52%), Positives = 155/219 (70%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLF 516
           W TLPP+  T N + +   +      G  +   S+ ++TALKWV+ CCP LPR+LVQKLF
Sbjct: 60  WFTLPPYTATVNGSILGNRIMNGG--GQAELGASTAAITALKWVIRCCPELPRSLVQKLF 117

Query: 515 RLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQRKE 336
           RLR+V R+           N+G  +  H+L+RV+AKD +N+GD IFLP++VQ F +++  
Sbjct: 118 RLRKVPRQL----------NVGCGNSHHQLKRVAAKDILNVGDQIFLPMSVQVFSTEKTR 167

Query: 335 CPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPPR 156
             CN++E  ++ SL ++KD AI+V+NKPPG+PVQGGIG+ +SLD LAA+ L     EPPR
Sbjct: 168 DYCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPR 227

Query: 155 LVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGASNN 39
           LVHRLDRDSSGIL+MGRT  ST+LLHSVFREKTF AS +
Sbjct: 228 LVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKH 266


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  225 bits (573), Expect = 2e-56
 Identities = 119/219 (54%), Positives = 156/219 (71%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLF 516
           W TLPP+  T N + +   +      G  +   S+ ++TALKWV+ CCP LPR+LVQKLF
Sbjct: 60  WFTLPPYTATVNGSILGNRIMNGG--GQAELGASTAAITALKWVIRCCPELPRSLVQKLF 117

Query: 515 RLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEFPSQRKE 336
           RLR+VRR S  S    S  NL  + +   L+RV+AKD +N+GD IFLP++VQ F +++  
Sbjct: 118 RLRKVRRGS--SMIENSEYNLEARDQ---LKRVAAKDILNVGDQIFLPMSVQVFSTEKTR 172

Query: 335 CPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLEPPR 156
             CN++E  ++ SL ++KD AI+V+NKPPG+PVQGGIG+ +SLD LAA+ L     EPPR
Sbjct: 173 DYCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPR 232

Query: 155 LVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGASNN 39
           LVHRLDRDSSGIL+MGRT  ST+LLHSVFREKTF AS +
Sbjct: 233 LVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKH 271


>ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum]
           gi|557107647|gb|ESQ47954.1| hypothetical protein
           EUTSA_v10020633mg [Eutrema salsugineum]
          Length = 477

 Score =  214 bits (544), Expect = 5e-53
 Identities = 119/220 (54%), Positives = 154/220 (70%), Gaps = 3/220 (1%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQKLF 516
           WLTLPPF+PT +AA+V K L      G+    +S  S TAL+W+L C P LPRTLVQKLF
Sbjct: 58  WLTLPPFSPTIDAAAVGKELFSD---GDSVKASSDGSTTALRWILRCRPDLPRTLVQKLF 114

Query: 515 RLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEF---PSQ 345
           RLRQVRRE        S S  G + +  +L+RV+AK+ +N+GD I+LP++V      P++
Sbjct: 115 RLRQVRREM-------SLSCDGDELQRSQLKRVAAKESLNLGDRIYLPLSVNNDAPPPAK 167

Query: 344 RKECPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSDSLE 165
           ++   C+E+E K++ SL +YKD AIIV+NKP G+ VQGG GI  S+D LAAT L     E
Sbjct: 168 KESFCCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKSE 227

Query: 164 PPRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGAS 45
            PRLVHRLDRD SG+LV+GRTQ + T+LHS+FREKT GAS
Sbjct: 228 SPRLVHRLDRDCSGLLVLGRTQTAATVLHSIFREKTSGAS 267


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
           gi|482566291|gb|EOA30480.1| hypothetical protein
           CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  212 bits (540), Expect = 2e-52
 Identities = 117/223 (52%), Positives = 155/223 (69%), Gaps = 6/223 (2%)
 Frame = -1

Query: 695 WLTLPPFNPTSNAASVAKFLSE--CRVVGNQKHETSSTSMTALKWVLHCCPRLPRTLVQK 522
           WLTLPPF+PT +  +V K L+     + G+    T S++ TAL+W+L C P LPRTLVQK
Sbjct: 55  WLTLPPFSPTVDGTAVGKELASEGDSITGS----TDSSTTTALRWILRCRPDLPRTLVQK 110

Query: 521 LFRLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFLPVTVQEF---- 354
           LFRLRQVRRE        S S  G + +  +L+RV+AK+ +N+GD I+LP++V       
Sbjct: 111 LFRLRQVRREM-------SVSCDGDEVQRSQLKRVAAKESLNVGDRIYLPLSVDNDAPPP 163

Query: 353 PSQRKECPCNEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLLAATYLRSD 174
           P++++   C+E+E K++ SL +YKD +IIV+NKP GM VQGG GI  S+D LAAT L  D
Sbjct: 164 PAKKESFRCSEEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFD 223

Query: 173 SLEPPRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGAS 45
             E PRLVHRLDRD SG+LV+ RTQ + T+LHS+FREKT GAS
Sbjct: 224 KSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTSGAS 266


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudouridine synthase 4, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 4; AltName:
           Full=RNA-uridine isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  212 bits (539), Expect = 2e-52
 Identities = 123/248 (49%), Positives = 166/248 (66%), Gaps = 6/248 (2%)
 Frame = -1

Query: 770 AHQYTTASIFSREESDXXXXXXXXKWLTLPPFNPTSNAASVAK-FLSECRVVGNQKHETS 594
           AHQ T +  +S  ++D         WLTLPPF+PT +  +V K  LS+   V   K  T 
Sbjct: 36  AHQSTRS--YSTTQTDDSRGK----WLTLPPFSPTIDGTAVGKDLLSDGDSV---KSSTD 86

Query: 593 STSMTALKWVLHCCPRLPRTLVQKLFRLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVS 414
           ++  TAL+W+L C P LPRTLVQKLFRLRQVRRE        S S  G + +  +L+RV+
Sbjct: 87  NSKTTALRWILRCRPDLPRTLVQKLFRLRQVRREM-------SMSVDGDELQRSQLKRVA 139

Query: 413 AKDGMNIGDVIFLPVTV-----QEFPSQRKECPCNEDEIKYIRSLEVYKDSAIIVVNKPP 249
           AK+ +N+GD I+LP++V     Q  P++++   C+++E K++ SL +YKD AIIV+NKP 
Sbjct: 140 AKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPH 199

Query: 248 GMPVQGGIGIMKSLDLLAATYLRSDSLEPPRLVHRLDRDSSGILVMGRTQASTTLLHSVF 69
           G+ VQGG GI  S+D LAA+ L+ D  E PRLVHRLDRD SG+LV+ RTQ + T+LHS+F
Sbjct: 200 GLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIF 259

Query: 68  REKTFGAS 45
           REKT GAS
Sbjct: 260 REKTTGAS 267


>gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Triticum urartu]
          Length = 468

 Score =  211 bits (537), Expect = 3e-52
 Identities = 116/230 (50%), Positives = 154/230 (66%), Gaps = 1/230 (0%)
 Frame = -1

Query: 734 EESDXXXXXXXXKWLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHC 555
           EES         +W+ LPPF P   AA+        R  G  + E SS S TA++WV  C
Sbjct: 41  EESGRPDKGNKNRWMELPPFTPVDAAAAARAIF---RGQGGDEIEGSSNS-TAIRWVRRC 96

Query: 554 CPRLPRTLVQKLFRLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFL 375
           CP LP +LVQKLFRLR+V++ ++ +  S++ ++    ++  RLRRVSAKD +  GD +FL
Sbjct: 97  CPHLPASLVQKLFRLRKVKKNAVTAETSSTDAS----AKQFRLRRVSAKDHLVPGDTLFL 152

Query: 374 PVTVQEFPSQRKECPC-NEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLL 198
           PV +QE P   K     N +EI ++RSLE+YKD AIIVVNKPPGMPVQGG+GI  S+D+L
Sbjct: 153 PVNIQESPVAEKARKFDNRNEIDFLRSLEIYKDKAIIVVNKPPGMPVQGGVGIKNSIDVL 212

Query: 197 AATYLRSDSLEPPRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGA 48
           A  +   +S + PRLVHRLDRD SG+LV+GRTQ S ++LH++FREKT  A
Sbjct: 213 APMF-EENSSDAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFREKTADA 261


>gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilops tauschii]
          Length = 468

 Score =  211 bits (536), Expect = 5e-52
 Identities = 116/230 (50%), Positives = 154/230 (66%), Gaps = 1/230 (0%)
 Frame = -1

Query: 734 EESDXXXXXXXXKWLTLPPFNPTSNAASVAKFLSECRVVGNQKHETSSTSMTALKWVLHC 555
           EES         +W+ LPPF P   AA+        R  G  + E +S S TA++WV  C
Sbjct: 41  EESGRPDKGNKNRWMELPPFAPVDAAAAARAIF---RGQGGDEIEGNSNS-TAIRWVRRC 96

Query: 554 CPRLPRTLVQKLFRLRQVRRESLDSSHSTSASNLGTKSEDHRLRRVSAKDGMNIGDVIFL 375
           CP LP +LVQKLFRLR+V++ ++ +  S++ ++    +E  RLRRVSAKD +  GD +FL
Sbjct: 97  CPHLPASLVQKLFRLRKVKKNAVTAETSSTDAS----AEQFRLRRVSAKDHLVPGDTLFL 152

Query: 374 PVTVQEFPSQRKECPC-NEDEIKYIRSLEVYKDSAIIVVNKPPGMPVQGGIGIMKSLDLL 198
           PV +QE P   K     N +EI ++RSLE+YKD AIIVVNKPPGMPVQGG+GI  S+D+L
Sbjct: 153 PVNIQESPVAEKARKFDNRNEIDFLRSLEIYKDKAIIVVNKPPGMPVQGGVGIKNSIDVL 212

Query: 197 AATYLRSDSLEPPRLVHRLDRDSSGILVMGRTQASTTLLHSVFREKTFGA 48
           A  +   +S + PRLVHRLDRD SG+LV+GRTQ S ++LH++FREKT  A
Sbjct: 213 APMF-EENSSDAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFREKTADA 261