BLASTX nr result
ID: Cocculus23_contig00028882
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00028882
(351 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI15850.3| unnamed protein product [Vitis vinifera] 85 9e-15
ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synth... 85 9e-15
emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera] 85 9e-15
gb|EXC11333.1| Putative tRNA pseudouridine synthase [Morus notab... 75 9e-12
ref|XP_004145230.1| PREDICTED: putative tRNA pseudouridine synth... 75 1e-11
ref|XP_007017040.1| Pseudouridine synthase family protein [Theob... 72 6e-11
ref|XP_002319961.2| hypothetical protein POPTR_0013s15030g [Popu... 70 2e-10
ref|XP_007207376.1| hypothetical protein PRUPE_ppa004352mg [Prun... 70 2e-10
ref|XP_006410132.1| hypothetical protein EUTSA_v10016529mg [Eutr... 69 7e-10
ref|XP_002881100.1| tRNA pseudouridine synthase family protein [... 69 9e-10
ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus ... 69 9e-10
ref|NP_180591.1| putative tRNA pseudouridine synthase [Arabidops... 68 1e-09
ref|XP_007142072.1| hypothetical protein PHAVU_008G250200g [Phas... 66 4e-09
ref|XP_006294040.1| hypothetical protein CARUB_v10023036mg [Caps... 66 4e-09
ref|XP_004247032.1| PREDICTED: putative tRNA pseudouridine synth... 65 1e-08
ref|XP_006468147.1| PREDICTED: putative tRNA pseudouridine synth... 64 2e-08
ref|XP_006431979.1| hypothetical protein CICLE_v100038301mg, par... 64 2e-08
ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synth... 64 2e-08
ref|XP_006348027.1| PREDICTED: putative tRNA pseudouridine synth... 64 3e-08
ref|XP_004296032.1| PREDICTED: putative tRNA pseudouridine synth... 64 3e-08
>emb|CBI15850.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 85.1 bits (209), Expect = 9e-15
Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +2
Query: 59 MAVSSLRLPFVPW--SRNPNLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSID 232
M VSSLR P PW S + + FSNP+ + + + ++S+ D
Sbjct: 1 MVVSSLRFPLFPWIISNHTSNLRFSNPRILPQWSLHCSSS---------SSSTVTESNPD 51
Query: 233 ALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
V KWESFRKKKVVMRVGYVGT+YRGLQ+QRDE+SLST
Sbjct: 52 QSVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLST 90
>ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synthase-like [Vitis
vinifera]
Length = 564
Score = 85.1 bits (209), Expect = 9e-15
Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +2
Query: 59 MAVSSLRLPFVPW--SRNPNLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSID 232
M VSSLR P PW S + + FSNP+ + + + ++S+ D
Sbjct: 1 MVVSSLRFPLFPWIISNHTSNLRFSNPRILPQWSLHCSSS---------SSSTVTESNPD 51
Query: 233 ALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
V KWESFRKKKVVMRVGYVGT+YRGLQ+QRDE+SLST
Sbjct: 52 QSVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLST 90
>emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]
Length = 602
Score = 85.1 bits (209), Expect = 9e-15
Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +2
Query: 59 MAVSSLRLPFVPW--SRNPNLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSID 232
M VSSLR P PW S + + FSNP+ + + + ++S+ D
Sbjct: 1 MVVSSLRFPLFPWIISNHTSNLRFSNPRILPQWSLHCSSS---------SSSTVTESNPD 51
Query: 233 ALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
V KWESFRKKKVVMRVGYVGT+YRGLQ+QRDE+SLST
Sbjct: 52 QSVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLST 90
>gb|EXC11333.1| Putative tRNA pseudouridine synthase [Morus notabilis]
Length = 481
Score = 75.1 bits (183), Expect = 9e-12
Identities = 47/97 (48%), Positives = 54/97 (55%)
Frame = +2
Query: 59 MAVSSLRLPFVPWSRNPNLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSIDAL 238
MA+SSLRLP P+ PF P F + L+ S +
Sbjct: 1 MAISSLRLPLSPFLAKS---PFPTPTFRTSSILIIPLRLTPIYFRCLSS---SQDTTPHS 54
Query: 239 VGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
KWE FRKKKVVMRVGYVGTDYRGLQ+QRDE+SLST
Sbjct: 55 ENKWEPFRKKKVVMRVGYVGTDYRGLQMQRDEHSLST 91
>ref|XP_004145230.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 507
Score = 74.7 bits (182), Expect = 1e-11
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Frame = +2
Query: 59 MAVSSLRLPFVPW--SRNPNLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSID 232
M+VSSLRLP PW + + F F +P FV + FS
Sbjct: 1 MSVSSLRLPLSPWITKASSSCFRFPDPVFVSRTPPLRPALLHFFSSSTASTDAFSTRCAP 60
Query: 233 ALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
+ KW++FRKKKVV+R+GYVGTDYRGLQ+QR++ S T
Sbjct: 61 DQLRKWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPT 99
>ref|XP_007017040.1| Pseudouridine synthase family protein [Theobroma cacao]
gi|508787403|gb|EOY34659.1| Pseudouridine synthase
family protein [Theobroma cacao]
Length = 507
Score = 72.4 bits (176), Expect = 6e-11
Identities = 44/97 (45%), Positives = 51/97 (52%)
Frame = +2
Query: 59 MAVSSLRLPFVPWSRNPNLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSIDAL 238
MA+S LR P PW L NP +++ LP S
Sbjct: 1 MAISCLRAPLAPW-----LMKTRNPPPLKLPCPRIQLRFLCSSSTAQPLPPASP------ 49
Query: 239 VGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
KWE FRKKKVVMRVGYVGT+YRGLQ+QRDE+ LST
Sbjct: 50 --KWEPFRKKKVVMRVGYVGTNYRGLQVQRDEHQLST 84
>ref|XP_002319961.2| hypothetical protein POPTR_0013s15030g [Populus trichocarpa]
gi|550325882|gb|EEE95884.2| hypothetical protein
POPTR_0013s15030g [Populus trichocarpa]
Length = 505
Score = 70.5 bits (171), Expect = 2e-10
Identities = 47/103 (45%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Frame = +2
Query: 59 MAVSSLRLPFVPWS--RNPNLFP---FSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDS 223
MA+SSLR P PW + P L P FS P P +DS
Sbjct: 1 MAISSLRFPLSPWLLLKTPKLKPSFRFSFPILPSSRHTQLLLLCSYSQSPPSISPPLTDS 60
Query: 224 -SIDALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
S +L KWES RKKKV +RVGYVGTDYRGLQ Q D++SL T
Sbjct: 61 NSNQSLHSKWESIRKKKVALRVGYVGTDYRGLQKQHDQHSLLT 103
>ref|XP_007207376.1| hypothetical protein PRUPE_ppa004352mg [Prunus persica]
gi|462403018|gb|EMJ08575.1| hypothetical protein
PRUPE_ppa004352mg [Prunus persica]
Length = 515
Score = 70.5 bits (171), Expect = 2e-10
Identities = 51/106 (48%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Frame = +2
Query: 59 MAVSSLRLPFVPW-SRNP-NLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSID 232
MA+SSLRLPF W R P F FS P LNL + SSI
Sbjct: 1 MAISSLRLPFSLWLPRLPIQSFRFSKP----------------ILPLRLNLI-YCSSSIS 43
Query: 233 AL-------VGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
+ + KW+S RKKKVV+RVGYVG+DYRGLQ+QRDE+SLST
Sbjct: 44 STAQQTSTHLEKWQSVRKKKVVLRVGYVGSDYRGLQMQRDEHSLST 89
>ref|XP_006410132.1| hypothetical protein EUTSA_v10016529mg [Eutrema salsugineum]
gi|557111301|gb|ESQ51585.1| hypothetical protein
EUTSA_v10016529mg [Eutrema salsugineum]
Length = 512
Score = 68.9 bits (167), Expect = 7e-10
Identities = 32/48 (66%), Positives = 39/48 (81%)
Frame = +2
Query: 206 PEFSDSSIDALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
P S++S L KWES+RKKKVV+R+GYVGTDYRGLQIQRD+ +L T
Sbjct: 45 PSPSNNSGQLLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPALKT 92
>ref|XP_002881100.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297326939|gb|EFH57359.1| tRNA
pseudouridine synthase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 507
Score = 68.6 bits (166), Expect = 9e-10
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 221 SSIDALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
SS + L KWES+RKKKVV+R+GYVGTDYRGLQIQRD+ SL T
Sbjct: 48 SSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSLKT 90
>ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223543132|gb|EEF44666.1| pseudouridylate synthase,
putative [Ricinus communis]
Length = 377
Score = 68.6 bits (166), Expect = 9e-10
Identities = 46/98 (46%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +2
Query: 59 MAVSSLRLPFVPWS-RNPNLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSIDA 235
MA+SSLR P P R+P F P +L S S
Sbjct: 1 MALSSLRFPLYPLLLRSPRRVFFKFPVI-----------------PILPSRLSSQSHAHI 43
Query: 236 LVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
L KWE FRKKKVV+RVGYVGTDYRGLQ Q DE+SLST
Sbjct: 44 LSQKWEPFRKKKVVLRVGYVGTDYRGLQKQEDEHSLST 81
>ref|NP_180591.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
gi|3914486|sp|O22928.1|PUSH_ARATH RecName: Full=Putative
tRNA pseudouridine synthase; AltName: Full=tRNA
pseudouridylate synthase; AltName: Full=tRNA-uridine
isomerase gi|2347206|gb|AAC16945.1| putative
pseudouridine synthase [Arabidopsis thaliana]
gi|330253276|gb|AEC08370.1| putative tRNA pseudouridine
synthase [Arabidopsis thaliana]
Length = 510
Score = 67.8 bits (164), Expect = 1e-09
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +2
Query: 221 SSIDALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
SS + L KWES+RKKKVV+R+GYVGTDYRGLQIQRD+ S+ T
Sbjct: 48 SSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKT 90
>ref|XP_007142072.1| hypothetical protein PHAVU_008G250200g [Phaseolus vulgaris]
gi|561015205|gb|ESW14066.1| hypothetical protein
PHAVU_008G250200g [Phaseolus vulgaris]
Length = 512
Score = 66.2 bits (160), Expect = 4e-09
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +2
Query: 215 SDSSIDALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
S S+ KWE F KKKVVMRVGYVGTD+RGLQIQRDE++LST
Sbjct: 53 STHSLPTPSNKWEPFLKKKVVMRVGYVGTDFRGLQIQRDEHTLST 97
>ref|XP_006294040.1| hypothetical protein CARUB_v10023036mg [Capsella rubella]
gi|482562748|gb|EOA26938.1| hypothetical protein
CARUB_v10023036mg [Capsella rubella]
Length = 508
Score = 66.2 bits (160), Expect = 4e-09
Identities = 45/101 (44%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Frame = +2
Query: 59 MAVSSLRLPF---VPWSRNPNLFPFSNPKFVRIYGXXXXXXXXXXXXQVLNLPEFSDSSI 229
MAVS LR+P V W P + P VR + S SS
Sbjct: 1 MAVSFLRIPIPSRVFWY--PTRLTRATPALVRFSSSAATLQP--------SSTSLSPSSS 50
Query: 230 DA-LVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
D L KWES+RKKKVV+R+GYVGTDYRGLQIQRD+ ++ T
Sbjct: 51 DHFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPAIKT 91
>ref|XP_004247032.1| PREDICTED: putative tRNA pseudouridine synthase-like [Solanum
lycopersicum]
Length = 496
Score = 65.1 bits (157), Expect = 1e-08
Identities = 32/45 (71%), Positives = 38/45 (84%)
Frame = +2
Query: 215 SDSSIDALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
S SS+++ KWE F KKKVVMRVGYVG+DYRGLQ+QRDE+ LST
Sbjct: 31 STSSVES--NKWEPFIKKKVVMRVGYVGSDYRGLQMQRDEHQLST 73
>ref|XP_006468147.1| PREDICTED: putative tRNA pseudouridine synthase-like isoform X4
[Citrus sinensis]
Length = 539
Score = 64.3 bits (155), Expect = 2e-08
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = +2
Query: 245 KWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
KWE RKKKV +RVGYVGTDYRGLQ+QRDE+SLST
Sbjct: 71 KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLST 105
>ref|XP_006431979.1| hypothetical protein CICLE_v100038301mg, partial [Citrus
clementina] gi|557534101|gb|ESR45219.1| hypothetical
protein CICLE_v100038301mg, partial [Citrus clementina]
Length = 142
Score = 64.3 bits (155), Expect = 2e-08
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = +2
Query: 245 KWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
KWE RKKKV +RVGYVGTDYRGLQ+QRDE+SLST
Sbjct: 71 KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLST 105
>ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
Length = 516
Score = 63.9 bits (154), Expect = 2e-08
Identities = 31/45 (68%), Positives = 35/45 (77%)
Frame = +2
Query: 215 SDSSIDALVGKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
S S+ KWE F KKKVVMRVGYVGTD+RGLQ+QRDE+ LST
Sbjct: 58 STQSLPTPSEKWEPFLKKKVVMRVGYVGTDFRGLQMQRDEHRLST 102
>ref|XP_006348027.1| PREDICTED: putative tRNA pseudouridine synthase-like isoform X1
[Solanum tuberosum]
Length = 487
Score = 63.5 bits (153), Expect = 3e-08
Identities = 33/48 (68%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Frame = +2
Query: 212 FSDSSIDALV--GKWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
FS S D V KW+ F KKKVVMRVGYVG+DYRGLQ+QRDE+ LST
Sbjct: 30 FSTSPEDLSVQSNKWDPFIKKKVVMRVGYVGSDYRGLQMQRDEHQLST 77
>ref|XP_004296032.1| PREDICTED: putative tRNA pseudouridine synthase-like [Fragaria
vesca subsp. vesca]
Length = 509
Score = 63.5 bits (153), Expect = 3e-08
Identities = 28/35 (80%), Positives = 33/35 (94%)
Frame = +2
Query: 245 KWESFRKKKVVMRVGYVGTDYRGLQIQRDENSLST 349
+WES RK+KVV+RVGYVGTDYRGLQIQRD+ S+ST
Sbjct: 53 RWESVRKRKVVLRVGYVGTDYRGLQIQRDDPSIST 87