BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00028659
         (271 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006844127.1| hypothetical protein AMTR_s00006p00257590 [A...    60   3e-07
ref|XP_006293749.1| hypothetical protein CARUB_v10022711mg [Caps...    59   9e-07
ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp....    57   4e-06
emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]    57   4e-06
ref|XP_006338806.1| PREDICTED: pentatricopeptide repeat-containi...    56   6e-06
ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containi...    56   6e-06
ref|NP_180537.1| RNA editing factor OTP81 [Arabidopsis thaliana]...    55   8e-06

>ref|XP_006844127.1| hypothetical protein AMTR_s00006p00257590 [Amborella trichopoda]
           gi|548846526|gb|ERN05802.1| hypothetical protein
           AMTR_s00006p00257590 [Amborella trichopoda]
          Length = 247

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 30/67 (44%), Positives = 43/67 (64%)
 Frame = +3

Query: 69  SLSSQPTPTPNTNISLLVLCTHLQEAKQVHALMIKSSQISDAYSASRLAEFYAISDHGSL 248
           SL  + +   +  + LL LC    EA QVHA + KS QI   + AS++AEFYAIS+ G++
Sbjct: 11  SLQPKISTHQSKTLFLLQLCKSTNEATQVHAQLFKSGQILQTFHASKMAEFYAISNPGNI 70

Query: 249 KYAEKVL 269
            YAEK++
Sbjct: 71  AYAEKII 77


>ref|XP_006293749.1| hypothetical protein CARUB_v10022711mg [Capsella rubella]
           gi|482562457|gb|EOA26647.1| hypothetical protein
           CARUB_v10022711mg [Capsella rubella]
          Length = 739

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = +3

Query: 39  LSLPHAVPTLSLSSQPTPTPNTN---ISLLVLCTHLQEAKQVHALMIKSSQISDAYSASR 209
           LSLP   PT S  +QPT     +   ISL+  C++L++ KQ HA MI++   SD YSAS+
Sbjct: 10  LSLPRH-PTFSGPNQPTTNNERSRHTISLIDRCSNLRQLKQTHAHMIRTGTFSDPYSASK 68

Query: 210 LAEFYAISDHGSLKYAEKV 266
           L    A+S   SL+YA KV
Sbjct: 69  LFAIAALSSFASLEYARKV 87


>ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297325073|gb|EFH55493.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
 Frame = +3

Query: 39  LSLPHAVPTLSLSSQPTPTPNTN---ISLLVLCTHLQEAKQVHALMIKSSQISDAYSASR 209
           LSLP   P  S  +QPT     +   ISL+  C+ L++ KQ HA MI++   SD YSAS+
Sbjct: 10  LSLPRH-PNFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASK 68

Query: 210 LAEFYAISDHGSLKYAEKV 266
           L    A+S   SL+YA KV
Sbjct: 69  LFAIAALSSFASLEYARKV 87


>emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
          Length = 476

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +3

Query: 54  AVPTLSLSSQPTPTPNTNISLLV-LCTHLQEAKQVHALMIKSSQISDAYSASRLAEFYAI 230
           ++ T  L   P P P    SLL   CT + + KQ+HA MI S++I D Y+ASRL  F A+
Sbjct: 13  SILTSVLHPPPPPPPPPRXSLLADKCTSMHQLKQIHAQMIVSARIHDNYAASRLLSFCAL 72

Query: 231 SDHGSLKYA 257
           S+ G L YA
Sbjct: 73  SESGDLSYA 81


>ref|XP_006338806.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Solanum tuberosum]
          Length = 477

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
 Frame = +3

Query: 69  SLSSQPTPTPNTN---ISLLV-LCTHLQEAKQVHALMIKSSQISDAYSASRLAEFYAISD 236
           S++  P+  P+ N   +SLL   CT L + KQ+HA MI S++I D Y+ASRL  F A+S+
Sbjct: 16  SITYVPSAPPSRNPPHLSLLADQCTSLHQLKQIHAQMIISARIHDNYAASRLLSFSALSE 75

Query: 237 HGSLKYAEKV 266
            GSL YA ++
Sbjct: 76  SGSLSYAVRL 85


>ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 474

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = +3

Query: 84  PTPTPNTNISLLV-LCTHLQEAKQVHALMIKSSQISDAYSASRLAEFYAISDHGSLKYA 257
           P P P    SLL   CT + + KQ+HA MI S++I D Y+ASRL  F A+S+ G L YA
Sbjct: 21  PPPPPPPRFSLLADKCTSMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYA 79


>ref|NP_180537.1| RNA editing factor OTP81 [Arabidopsis thaliana]
           gi|75100656|sp|O82380.1|PP175_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
           gi|3582328|gb|AAC35225.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253207|gb|AEC08301.1| RNA
           editing factor OTP81 [Arabidopsis thaliana]
          Length = 738

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
 Frame = +3

Query: 39  LSLPHAVPTLSLSSQPTPTP--NTNISLLVLCTHLQEAKQVHALMIKSSQISDAYSASRL 212
           LSLP   P  S  +QPT     + +ISL+  C  L++ KQ H  MI++   SD YSAS+L
Sbjct: 10  LSLPRH-PNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKL 68

Query: 213 AEFYAISDHGSLKYAEKV 266
               A+S   SL+YA KV
Sbjct: 69  FAMAALSSFASLEYARKV 86