BLASTX nr result
ID: Cocculus23_contig00028521
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00028521
(304 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763... 60 3e-07
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 60 4e-07
gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subc... 60 4e-07
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 60 4e-07
emb|CAD40072.1| OSJNBa0085C10.25 [Oryza sativa Japonica Group] 60 4e-07
gb|ADB85432.1| putative retrotransposon protein [Phyllostachys e... 59 7e-07
gb|ABF97035.1| retrotransposon protein, putative, Ty3-gypsy subc... 59 7e-07
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 59 7e-07
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 59 7e-07
gb|AAP44593.1| putative gag-pol polyprotein [Oryza sativa Japoni... 59 7e-07
ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759... 59 9e-07
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 57 3e-06
ref|XP_004301556.1| PREDICTED: uncharacterized protein LOC101305... 57 3e-06
gb|AAN09859.1| putative polyprotein [Oryza sativa Japonica Group] 56 5e-06
gb|ABG65972.1| retrotransposon protein, putative, Ty3-gypsy subc... 56 5e-06
ref|XP_004967032.1| PREDICTED: uncharacterized protein LOC101782... 55 8e-06
ref|XP_007009850.1| Uncharacterized protein TCM_043155 [Theobrom... 55 8e-06
emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group] gi... 55 8e-06
>ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763064 [Setaria italica]
Length = 1131
Score = 60.1 bits (144), Expect = 3e-07
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LLGRPW D+D + G N YSF+HN ++VLHP
Sbjct: 567 VVPMQACSMLLGRPWQFDIDSLHHGKTNQYSFMHNDKKLVLHP 609
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 59.7 bits (143), Expect = 4e-07
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LLGRPW D D + G +N YSF+HNG ++VLHP
Sbjct: 568 VVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHP 610
>gb|ABA96965.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 59.7 bits (143), Expect = 4e-07
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LLGRPW HD D T+ G +N Y+F+HNG +I L P
Sbjct: 394 VVPMQACSLLLGRPWEHDNDATHHGRSNKYTFVHNGKKITLLP 436
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 59.7 bits (143), Expect = 4e-07
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LLGRPW D D + G +N YSF+HNG ++VLHP
Sbjct: 568 VVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHP 610
>emb|CAD40072.1| OSJNBa0085C10.25 [Oryza sativa Japonica Group]
Length = 625
Score = 59.7 bits (143), Expect = 4e-07
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LLGRPW HD D T+ G +N Y+F+HNG +I L P
Sbjct: 250 VVPMKACSFLLGRPWEHDNDATHHGRSNKYTFVHNGKKITLLP 292
>gb|ADB85432.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 870
Score = 58.9 bits (141), Expect = 7e-07
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LLGRPW++D DV + G ANTYSF H G +I L P
Sbjct: 543 VVPMQACSLLLGRPWIYDNDVLHHGRANTYSFSHRGKKIKLLP 585
>gb|ABF97035.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 550
Score = 58.9 bits (141), Expect = 7e-07
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM ACH LLGRPW D+ T+ G N YSF+H GV+ VL P
Sbjct: 432 VVPMNACHLLLGRPWQFDLHATHEGRTNHYSFIHRGVKHVLKP 474
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 58.9 bits (141), Expect = 7e-07
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+ACH LLGRPW +D D T+ G N YS LHNG + L P
Sbjct: 500 VVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAP 542
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 58.9 bits (141), Expect = 7e-07
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+ACH LLGRPW +D D T+ G N YS LHNG + L P
Sbjct: 500 VVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAP 542
>gb|AAP44593.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 519
Score = 58.9 bits (141), Expect = 7e-07
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM ACH LLGRPW D+ T+ G N YSF+H GV+ VL P
Sbjct: 401 VVPMNACHLLLGRPWQFDLHATHEGRTNHYSFIHRGVKHVLKP 443
>ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759439 [Setaria italica]
Length = 696
Score = 58.5 bits (140), Expect = 9e-07
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VP++AC LLGRPW D+D + G N YSF+HN ++VLHP
Sbjct: 175 VVPIQACSMLLGRPWQFDIDSLHHGKTNQYSFMHNDKKLVLHP 217
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 57.0 bits (136), Expect = 3e-06
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LGRPW D D + G +N YSF+HNG ++VLHP
Sbjct: 568 VVPMQACSIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHP 610
>ref|XP_004301556.1| PREDICTED: uncharacterized protein LOC101305082 [Fragaria vesca
subsp. vesca]
Length = 593
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHPS*AKPKTSQP 159
+VPM H LLGRPWL+D+DVT G +N+ SF+H G I L+P KP P
Sbjct: 435 VVPMDVGHILLGRPWLYDLDVTISGRSNSCSFIHEGKHIKLNPIQPKPVLQLP 487
>gb|AAN09859.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 928
Score = 56.2 bits (134), Expect = 5e-06
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LLG PW HD D T+ G +N Y+F+HNG + +L P
Sbjct: 569 VVPMQACSLLLGCPWEHDNDATHHGRSNKYTFVHNGKKFILLP 611
>gb|ABG65972.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1315
Score = 56.2 bits (134), Expect = 5e-06
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC LLG PW HD D T+ G +N Y+F+HNG + +L P
Sbjct: 569 VVPMQACSLLLGCPWEHDNDATHHGRSNKYTFVHNGKKFILLP 611
>ref|XP_004967032.1| PREDICTED: uncharacterized protein LOC101782149 [Setaria italica]
Length = 1054
Score = 55.5 bits (132), Expect = 8e-06
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+ACH LLG+PW DVD + GG+N Y+F+ N ++VL P
Sbjct: 606 IVPMQACHLLLGQPWQFDVDSVHFGGSNKYTFIANDKKVVLVP 648
>ref|XP_007009850.1| Uncharacterized protein TCM_043155 [Theobroma cacao]
gi|508726763|gb|EOY18660.1| Uncharacterized protein
TCM_043155 [Theobroma cacao]
Length = 625
Score = 55.5 bits (132), Expect = 8e-06
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
++PM ACH LLGRPW +D Y G NTYSF+ +GV+I+L P
Sbjct: 426 VIPMDACHLLLGRPWQYDRRAHYDGYKNTYSFIKDGVKIMLTP 468
>emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group]
gi|38345441|emb|CAE03293.2| OSJNBb0046P18.9 [Oryza
sativa Japonica Group]
Length = 1134
Score = 55.5 bits (132), Expect = 8e-06
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +1
Query: 1 MVPMRACHQLLGRPWLHDVDVTYRGGANTYSFLHNGVRIVLHP 129
+VPM+AC+ LLGRPW D D + G +N YSFL++ +IVLHP
Sbjct: 740 VVPMQACNILLGRPWQFDKDSLHHGRSNQYSFLYHDKKIVLHP 782