BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00027925
         (311 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004298270.1| PREDICTED: putative ribonuclease H protein A...    64   3e-08
ref|XP_004293150.1| PREDICTED: putative ribonuclease H protein A...    62   1e-07
ref|XP_004304877.1| PREDICTED: topless-related protein 3-like [F...    60   3e-07
ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein A...    59   9e-07

>ref|XP_004298270.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 393

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 36/86 (41%), Positives = 47/86 (54%)
 Frame = -2

Query: 277 IEGDALIVIQALEKDDCDMTELGLVLSDCKKAIEKMNNFIQLLAVGRSANLAAHRFGQFG 98
           IEGD  IV++AL   D D+ E+  +LSDC+  +E     I L  + R AN  AHR   F 
Sbjct: 282 IEGDCAIVMKALANTDGDVIEVSSILSDCRHYMEAFR-LILLRHIYREANGVAHRLAHFA 340

Query: 97  LSHCRTHMCVEEVPPIISDVLVEEAC 20
            S       V+E P II DVL+E+ C
Sbjct: 341 RSSSLYEFWVDETPDIIQDVLMEDGC 366


>ref|XP_004293150.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 136

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 36/86 (41%), Positives = 46/86 (53%)
 Frame = -2

Query: 277 IEGDALIVIQALEKDDCDMTELGLVLSDCKKAIEKMNNFIQLLAVGRSANLAAHRFGQFG 98
           IEGD   V++AL   D D+ E+  +LSDC+  +E    FI L  V R AN  AHR     
Sbjct: 25  IEGDCATVMKALATIDGDVIEVSFILSDCRHYMEAFR-FILLRHVYREANGVAHRLAHLA 83

Query: 97  LSHCRTHMCVEEVPPIISDVLVEEAC 20
            S       V+E P II DVL+E+ C
Sbjct: 84  RSSSLNEFWVDEPPDIIQDVLMEDGC 109


>ref|XP_004304877.1| PREDICTED: topless-related protein 3-like [Fragaria vesca subsp.
           vesca]
          Length = 1086

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 34/97 (35%), Positives = 55/97 (56%)
 Frame = -2

Query: 310 GVRNGSVQVDLIEGDALIVIQALEKDDCDMTELGLVLSDCKKAIEKMNNFIQLLAVGRSA 131
           G+  G   VD IE D+++++ ALE ++ D++E+G VL DCK  +  + + I++  +GR A
Sbjct: 13  GIHQGWSDVD-IESDSILLVAALEWEEEDLSEVGRVLGDCKDFMSALQS-IRIRHIGREA 70

Query: 130 NLAAHRFGQFGLSHCRTHMCVEEVPPIISDVLVEEAC 20
           N  A R      +     + + E P II DVL E+ C
Sbjct: 71  NGVADRLAHLASAGLLDDVWLGETPAIIQDVLYEDIC 107


>ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 1152

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 29/86 (33%), Positives = 47/86 (54%)
 Frame = -2

Query: 277  IEGDALIVIQALEKDDCDMTELGLVLSDCKKAIEKMNNFIQLLAVGRSANLAAHRFGQFG 98
            +E D + ++QA++ D  D + +G ++ DC++ +   N F QL  V R AN  A+R   F 
Sbjct: 1035 VESDCMNLVQAMQTDGEDFSMVGRIIEDCQRYVSAFN-FFQLQHVCREANSVANRLAHFA 1093

Query: 97   LSHCRTHMCVEEVPPIISDVLVEEAC 20
              +      ++E P II DVL E+ C
Sbjct: 1094 RCNSYDDFSLDETPAIIQDVLYEDLC 1119