BLASTX nr result
ID: Cocculus23_contig00027245
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00027245
(469 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006488282.1| PREDICTED: THO complex subunit 4-like isofor... 82 1e-13
ref|XP_006424776.1| hypothetical protein CICLE_v10029160mg [Citr... 82 1e-13
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro... 80 2e-13
emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera] 80 2e-13
ref|XP_004294581.1| PREDICTED: THO complex subunit 4-A-like [Fra... 79 7e-13
ref|XP_003606654.1| THO complex subunit [Medicago truncatula] gi... 77 2e-12
ref|XP_007027070.1| RNA-binding family protein [Theobroma cacao]... 74 3e-11
ref|XP_007150304.1| hypothetical protein PHAVU_005G142200g [Phas... 72 6e-11
ref|XP_006592204.1| PREDICTED: THO complex subunit 4-like isofor... 72 6e-11
ref|XP_003538006.1| PREDICTED: THO complex subunit 4-like isofor... 70 2e-10
ref|XP_007205766.1| hypothetical protein PRUPE_ppa010358mg [Prun... 70 4e-10
ref|XP_004505883.1| PREDICTED: THO complex subunit 4-like [Cicer... 69 7e-10
ref|XP_004143092.1| PREDICTED: RNA and export factor-binding pro... 69 7e-10
ref|XP_007016490.1| RNA-binding family protein [Theobroma cacao]... 68 1e-09
ref|XP_004251323.1| PREDICTED: THO complex subunit 4-like [Solan... 68 2e-09
gb|EXB52242.1| RNA and export factor-binding protein 2 [Morus no... 67 2e-09
ref|XP_003543506.1| PREDICTED: aly/REF export factor 2-like isof... 67 3e-09
ref|XP_006363386.1| PREDICTED: THO complex subunit 4-like [Solan... 67 3e-09
emb|CAJ44457.1| ALY protein [Nicotiana benthamiana] 67 3e-09
ref|XP_006651252.1| PREDICTED: THO complex subunit 4-like [Oryza... 66 4e-09
>ref|XP_006488282.1| PREDICTED: THO complex subunit 4-like isoform X1 [Citrus sinensis]
Length = 247
Score = 81.6 bits (200), Expect = 1e-13
Identities = 38/51 (74%), Positives = 43/51 (84%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHDMFADQ +A P QQ GR S+IE GTKLYI NLDYGVSNEDIK
Sbjct: 54 KAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIK 104
>ref|XP_006424776.1| hypothetical protein CICLE_v10029160mg [Citrus clementina]
gi|567864256|ref|XP_006424777.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|567864258|ref|XP_006424778.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|567864260|ref|XP_006424779.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526710|gb|ESR38016.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526711|gb|ESR38017.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526712|gb|ESR38018.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
gi|557526713|gb|ESR38019.1| hypothetical protein
CICLE_v10029160mg [Citrus clementina]
Length = 247
Score = 81.6 bits (200), Expect = 1e-13
Identities = 38/51 (74%), Positives = 43/51 (84%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHDMFADQ +A P QQ GR S+IE GTKLYI NLDYGVSNEDIK
Sbjct: 54 KAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIK 104
>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
gi|297746115|emb|CBI16171.3| unnamed protein product
[Vitis vinifera]
Length = 243
Score = 80.5 bits (197), Expect = 2e-13
Identities = 40/51 (78%), Positives = 45/51 (88%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHDMFADQAAA+PAQ GR S+IE GTKLYI NLDYGVSNEDIK
Sbjct: 55 KAPETTWQHDMFADQAAAYPAQ-AGRTSAIETGTKLYISNLDYGVSNEDIK 104
>emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]
Length = 281
Score = 80.5 bits (197), Expect = 2e-13
Identities = 40/51 (78%), Positives = 45/51 (88%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHDMFADQAAA+PAQ GR S+IE GTKLYI NLDYGVSNEDIK
Sbjct: 55 KAPETTWQHDMFADQAAAYPAQ-AGRTSAIETGTKLYISNLDYGVSNEDIK 104
>ref|XP_004294581.1| PREDICTED: THO complex subunit 4-A-like [Fragaria vesca subsp.
vesca]
Length = 250
Score = 79.0 bits (193), Expect = 7e-13
Identities = 38/51 (74%), Positives = 42/51 (82%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP+ST QHDMFADQ AA+ A GR S+IE GTKLYI NLDYGVSNEDIK
Sbjct: 55 KAPESTWQHDMFADQGAAYSAAPAGRASAIETGTKLYISNLDYGVSNEDIK 105
>ref|XP_003606654.1| THO complex subunit [Medicago truncatula]
gi|355507709|gb|AES88851.1| THO complex subunit
[Medicago truncatula]
Length = 376
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/54 (70%), Positives = 45/54 (83%), Gaps = 3/54 (5%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQ---AAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHD++ADQ AAA+PA QGGR SIE GTKLYI NLDYGVSN+DIK
Sbjct: 171 KAPETTWQHDLYADQHVAAAAYPAAQGGRAPSIETGTKLYISNLDYGVSNDDIK 224
>ref|XP_007027070.1| RNA-binding family protein [Theobroma cacao]
gi|508715675|gb|EOY07572.1| RNA-binding family protein
[Theobroma cacao]
Length = 240
Score = 73.6 bits (179), Expect = 3e-11
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
QAPD+T QHDMF D A P+ GR SSIE GTKLYI NLDYGVSNEDIK
Sbjct: 54 QAPDTTWQHDMFVDDGAGFPSA-AGRASSIETGTKLYISNLDYGVSNEDIK 103
>ref|XP_007150304.1| hypothetical protein PHAVU_005G142200g [Phaseolus vulgaris]
gi|593699733|ref|XP_007150305.1| hypothetical protein
PHAVU_005G142200g [Phaseolus vulgaris]
gi|561023568|gb|ESW22298.1| hypothetical protein
PHAVU_005G142200g [Phaseolus vulgaris]
gi|561023569|gb|ESW22299.1| hypothetical protein
PHAVU_005G142200g [Phaseolus vulgaris]
Length = 245
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/52 (71%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHP-AQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP+S QHDM+ADQ A A QGGR SSIE GTKLYI NLDYGVSN+DIK
Sbjct: 54 KAPESAWQHDMYADQGVATAFAGQGGRASSIETGTKLYISNLDYGVSNDDIK 105
>ref|XP_006592204.1| PREDICTED: THO complex subunit 4-like isoform X1 [Glycine max]
gi|571492362|ref|XP_006592205.1| PREDICTED: THO complex
subunit 4-like isoform X2 [Glycine max]
Length = 247
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 3/54 (5%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQ---AAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHD++ADQ AA +PAQ GGR +SIE GTKLYI NLDYGVSN+DIK
Sbjct: 54 KAPEATWQHDLYADQHVAAAGYPAQ-GGRAASIETGTKLYISNLDYGVSNDDIK 106
>ref|XP_003538006.1| PREDICTED: THO complex subunit 4-like isoform X1 [Glycine max]
gi|571488643|ref|XP_006590992.1| PREDICTED: THO complex
subunit 4-like isoform X2 [Glycine max]
Length = 247
Score = 70.5 bits (171), Expect = 2e-10
Identities = 36/54 (66%), Positives = 45/54 (83%), Gaps = 3/54 (5%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQ---AAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHD++ADQ AA +PAQ GGR +SIE GTKLYI NLDYGVS++DIK
Sbjct: 54 KAPEATWQHDLYADQQVAAAGYPAQ-GGRAASIETGTKLYISNLDYGVSSDDIK 106
>ref|XP_007205766.1| hypothetical protein PRUPE_ppa010358mg [Prunus persica]
gi|462401408|gb|EMJ06965.1| hypothetical protein
PRUPE_ppa010358mg [Prunus persica]
Length = 252
Score = 69.7 bits (169), Expect = 4e-10
Identities = 33/51 (64%), Positives = 39/51 (76%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++ QHD++ DQ AA Q GR S+IE GTKLYI NLDYGVSNEDIK
Sbjct: 54 KAPETAWQHDLYTDQGAAAFPAQAGRASAIETGTKLYISNLDYGVSNEDIK 104
>ref|XP_004505883.1| PREDICTED: THO complex subunit 4-like [Cicer arietinum]
Length = 257
Score = 68.9 bits (167), Expect = 7e-10
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 2/53 (3%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQ--AAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHD++ADQ AAA + QGGR SIE GTKLYI NLDY VSN+DIK
Sbjct: 53 KAPETTWQHDLYADQPVAAAAYSAQGGRAPSIETGTKLYISNLDYAVSNDDIK 105
>ref|XP_004143092.1| PREDICTED: RNA and export factor-binding protein 2-like [Cucumis
sativus] gi|449508143|ref|XP_004163231.1| PREDICTED: RNA
and export factor-binding protein 2-like [Cucumis
sativus]
Length = 237
Score = 68.9 bits (167), Expect = 7e-10
Identities = 34/51 (66%), Positives = 41/51 (80%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHDMFAD ++ Q GGR S+I+ GTKLYI NLDYGVSNEDIK
Sbjct: 53 KAPETTWQHDMFADPSSGFLVQ-GGRASAIQTGTKLYISNLDYGVSNEDIK 102
>ref|XP_007016490.1| RNA-binding family protein [Theobroma cacao]
gi|508786853|gb|EOY34109.1| RNA-binding family protein
[Theobroma cacao]
Length = 241
Score = 68.2 bits (165), Expect = 1e-09
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHDM++D+ AA Q GR S+IE GTKLYI NLDYGVSN+DIK
Sbjct: 54 KAPETTWQHDMYSDKGAAFQGQ-AGRASAIETGTKLYISNLDYGVSNDDIK 103
>ref|XP_004251323.1| PREDICTED: THO complex subunit 4-like [Solanum lycopersicum]
Length = 251
Score = 67.8 bits (164), Expect = 2e-09
Identities = 37/52 (71%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = -3
Query: 467 QAPDSTCQHDMF-ADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP ++ HDMF ADQA A Q GGR SSIE GTKLYI NLDYGVSNEDIK
Sbjct: 59 KAPQASWNHDMFEADQAVAF-GQAGGRASSIETGTKLYISNLDYGVSNEDIK 109
>gb|EXB52242.1| RNA and export factor-binding protein 2 [Morus notabilis]
Length = 248
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++T QHDM+ DQ A AQ GR S+I+ GTKLYI NL+YGVSNEDIK
Sbjct: 56 KAPETTWQHDMYMDQGTAFAAQ-AGRASAIQTGTKLYISNLEYGVSNEDIK 105
>ref|XP_003543506.1| PREDICTED: aly/REF export factor 2-like isoform X1 [Glycine max]
Length = 243
Score = 67.0 bits (162), Expect = 3e-09
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 2/53 (3%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQ--AAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP++ +HDM+A+Q AAA+P GGR SSIE GTKLYI NLDYGVSN+DIK
Sbjct: 54 KAPETAWKHDMYANQPVAAAYP---GGRASSIETGTKLYISNLDYGVSNDDIK 103
>ref|XP_006363386.1| PREDICTED: THO complex subunit 4-like [Solanum tuberosum]
Length = 254
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/51 (64%), Positives = 37/51 (72%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQGGRMSSIENGTKLYIYNLDYGVSNEDIK 315
+AP+++ HDMFA A Q GGR SSIE GTKLYI NLDYGVS EDIK
Sbjct: 59 KAPEASWNHDMFAADQAVAFGQAGGRASSIETGTKLYISNLDYGVSKEDIK 109
>emb|CAJ44457.1| ALY protein [Nicotiana benthamiana]
Length = 246
Score = 66.6 bits (161), Expect = 3e-09
Identities = 34/51 (66%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = -3
Query: 464 APDSTCQHDMFADQAAAHPAQQG-GRMSSIENGTKLYIYNLDYGVSNEDIK 315
AP+ST HDMFA+ A A+PA +G G +S IE G KL I NLDYGVSNEDIK
Sbjct: 60 APESTWDHDMFAEHAPAYPAARGAGGISGIETGIKLLISNLDYGVSNEDIK 110
>ref|XP_006651252.1| PREDICTED: THO complex subunit 4-like [Oryza brachyantha]
Length = 238
Score = 66.2 bits (160), Expect = 4e-09
Identities = 33/52 (63%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Frame = -3
Query: 467 QAPDSTCQHDMFADQAAAHPAQQG-GRMSSIENGTKLYIYNLDYGVSNEDIK 315
+APDS QHDM++D AA + G GR+S+IE GTKLYI NLD+GVSN+DIK
Sbjct: 40 KAPDSAWQHDMYSDVAAGGGSSGGVGRVSAIETGTKLYISNLDFGVSNDDIK 91