BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00027086
         (695 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ...    94   3e-26
ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ...    94   3e-26
ref|YP_008999925.1| RNA polymerase beta' subunit (chloroplast) [...    92   9e-26
gb|AEP25228.1| RNA polymerase C2 [Sarcobatus vermiculatus]             93   1e-25
gb|AEI27558.1| RNA polymerase beta subunit [Dirachma socotrana]        95   4e-25
gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia am...    92   5e-25
gb|AEP25209.1| RNA polymerase C2 [Asteropeia micraster]                90   6e-25
ref|YP_009000086.1| RNA polymerase beta' subunit (chloroplast) [...    89   8e-25
ref|YP_009000166.1| RNA polymerase beta' subunit (chloroplast) [...    88   1e-24
sp|Q589B8.1|RPOC2_SILLA RecName: Full=DNA-directed RNA polymeras...    88   1e-24
ref|YP_005089567.1| rpoC2 gene product (chloroplast) [Silene lat...    88   1e-24
ref|XP_006840943.1| hypothetical protein AMTR_s00390p00012910 [A...    93   2e-24
gb|ABV65715.1| RNA polymerase beta'' subunit, partial (chloropla...    93   2e-24
gb|AEX94824.1| RNA polymerase beta' subunit (chloroplast) [Ledeb...    91   2e-24
gb|AEI27568.1| RNA polymerase beta subunit [Rhamnus utilis]            92   2e-24
ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot escul...    89   3e-24
ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwang...    89   3e-24
gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloropla...    89   3e-24
gb|AEP25218.1| RNA polymerase C2 [Mollugo verticillata]                88   4e-24
gb|ADO13870.1| RNA polymerase beta subunit [Gonocaryum litorale]       84   5e-24

>ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron
           aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase
           beta'' subunit (chloroplast) [Trochodendron aralioides]
           gi|479279286|gb|AGJ72139.1| RNA polymerase beta''
           subunit (chloroplast) [Trochodendron aralioides]
          Length = 1381

 Score = 94.0 bits (232), Expect(2) = 3e-26
 Identities = 42/55 (76%), Positives = 48/55 (87%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP+YTYGNVHLLPKTSHLWILSG P  SS+VPF LH
Sbjct: 442 KHIYSDSKGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGPCRSSIVPFSLH 496



 Score = 51.2 bits (121), Expect(2) = 3e-26
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDSR 452
           E +QVIAEIR G ST+NFKE+V+KHIYSDS+
Sbjct: 419 ESEQVIAEIRAGTSTLNFKEKVRKHIYSDSK 449


>ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense]
           gi|479279193|gb|AGJ72047.1| RNA polymerase beta''
           subunit (chloroplast) [Tetracentron sinense]
          Length = 1378

 Score = 94.0 bits (232), Expect(2) = 3e-26
 Identities = 42/55 (76%), Positives = 48/55 (87%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP+YTYGNVHLLPKTSHLWILSG P  SS+VPF LH
Sbjct: 442 KHIYSDSKGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGPCRSSIVPFSLH 496



 Score = 51.2 bits (121), Expect(2) = 3e-26
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDSR 452
           E +QVIAEIR G ST+NFKE+V+KHIYSDS+
Sbjct: 419 ESEQVIAEIRAGTSTLNFKEKVRKHIYSDSK 449


>ref|YP_008999925.1| RNA polymerase beta' subunit (chloroplast) [Agrostemma githago]
           gi|555944011|gb|AGZ17915.1| RNA polymerase beta' subunit
           (chloroplast) [Agrostemma githago]
          Length = 1361

 Score = 91.7 bits (226), Expect(2) = 9e-26
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TYGNVHLLPK S LWILSG PY SSVVPF LH
Sbjct: 438 KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKASRLWILSGKPYRSSVVPFSLH 492



 Score = 52.0 bits (123), Expect(2) = 9e-26
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GAST+NFKE+V+KHIYSDS
Sbjct: 415 ESEQVIAEIRAGASTLNFKEKVRKHIYSDS 444


>gb|AEP25228.1| RNA polymerase C2 [Sarcobatus vermiculatus]
          Length = 1092

 Score = 92.8 bits (229), Expect(2) = 1e-25
 Identities = 42/64 (65%), Positives = 50/64 (78%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLHNIGAG 298
           K+I+  ++GEMH STDVYHAP++TYGNVH LPKTS LWILSG PY SSV+PF LH     
Sbjct: 403 KHIYSDSEGEMHWSTDVYHAPEFTYGNVHFLPKTSRLWILSGRPYRSSVIPFSLHKDQDQ 462

Query: 297 TSCH 286
           T+ H
Sbjct: 463 TNIH 466



 Score = 50.4 bits (119), Expect(2) = 1e-25
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR G ST+NFKE+V+KHIYSDS
Sbjct: 380 ESEQVIAEIRAGVSTLNFKEKVRKHIYSDS 409


>gb|AEI27558.1| RNA polymerase beta subunit [Dirachma socotrana]
          Length = 1252

 Score = 94.7 bits (234), Expect(2) = 4e-25
 Identities = 48/85 (56%), Positives = 56/85 (65%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLHNIGAG 298
           K+I+  ++GEMH STDVYHAP++TY NVHLLPKTSHLWILSG    SS+VPF LH     
Sbjct: 397 KHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCRSSIVPFSLHKDQDQ 456

Query: 297 TSCHFRGGWCREGYETEGLGVELEN 223
           T+ HF  G   EG     L V   N
Sbjct: 457 TNVHFLSG---EGKNISSLSVNTVN 478



 Score = 47.0 bits (110), Expect(2) = 4e-25
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR G  T+NFKE+V+KHIYSDS
Sbjct: 374 ESEQVIAEIRGGTYTLNFKEKVRKHIYSDS 403


>gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia americana]
          Length = 1391

 Score = 92.4 bits (228), Expect(2) = 5e-25
 Identities = 44/66 (66%), Positives = 51/66 (77%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLHNIGAG 298
           K+I+  ++GEMH STDVYHA ++TYGNVHLLPKTSHLWILSG P  S+V PFLLH     
Sbjct: 442 KHIYSDSEGEMHWSTDVYHASEFTYGNVHLLPKTSHLWILSGGPCGSNVTPFLLHKDQDQ 501

Query: 297 TSCHFR 280
           TS H R
Sbjct: 502 TSGHSR 507



 Score = 48.9 bits (115), Expect(2) = 5e-25
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +Q IAEIR G ST+NFKE+V+KHIYSDS
Sbjct: 419 ESEQTIAEIRAGTSTLNFKEKVRKHIYSDS 448


>gb|AEP25209.1| RNA polymerase C2 [Asteropeia micraster]
          Length = 1106

 Score = 89.7 bits (221), Expect(2) = 6e-25
 Identities = 39/55 (70%), Positives = 47/55 (85%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TYGNVHLLPKTSHLWILSG PY S + PF L+
Sbjct: 405 KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGRPYRSGLAPFSLY 459



 Score = 51.2 bits (121), Expect(2) = 6e-25
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GAST NFKE+V+KHIYSDS
Sbjct: 382 ESEQVIAEIRAGASTFNFKEKVRKHIYSDS 411


>ref|YP_009000086.1| RNA polymerase beta' subunit (chloroplast) [Silene chalcedonica]
           gi|555944174|gb|AGZ18076.1| RNA polymerase beta' subunit
           (chloroplast) [Silene chalcedonica]
          Length = 1369

 Score = 88.6 bits (218), Expect(2) = 8e-25
 Identities = 40/55 (72%), Positives = 46/55 (83%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TYGNVHLLPK S LWILSG PY SSVV F LH
Sbjct: 438 KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKASRLWILSGKPYRSSVVSFSLH 492



 Score = 52.0 bits (123), Expect(2) = 8e-25
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GAST+NFKE+V+KHIYSDS
Sbjct: 415 ESEQVIAEIRAGASTLNFKEKVRKHIYSDS 444


>ref|YP_009000166.1| RNA polymerase beta' subunit (chloroplast) [Silene paradoxa]
           gi|555944255|gb|AGZ18156.1| RNA polymerase beta' subunit
           (chloroplast) [Silene paradoxa]
          Length = 1373

 Score = 88.2 bits (217), Expect(2) = 1e-24
 Identities = 40/55 (72%), Positives = 46/55 (83%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TYGNVHLLPK S LWILSG PY SSVV F LH
Sbjct: 438 KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKASRLWILSGRPYRSSVVSFSLH 492



 Score = 52.0 bits (123), Expect(2) = 1e-24
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GAST+NFKE+V+KHIYSDS
Sbjct: 415 ESEQVIAEIRAGASTLNFKEKVRKHIYSDS 444


>sp|Q589B8.1|RPOC2_SILLA RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta''; Short=RNA polymerase subunit beta''
           gi|62149317|dbj|BAD93459.1| RNA polymerase beta chain
           [Silene latifolia]
          Length = 1373

 Score = 88.2 bits (217), Expect(2) = 1e-24
 Identities = 40/55 (72%), Positives = 46/55 (83%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TYGNVHLLPK S LWILSG PY SSVV F LH
Sbjct: 438 KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKASRLWILSGRPYRSSVVSFSLH 492



 Score = 52.0 bits (123), Expect(2) = 1e-24
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GAST+NFKE+V+KHIYSDS
Sbjct: 415 ESEQVIAEIRAGASTLNFKEKVRKHIYSDS 444


>ref|YP_005089567.1| rpoC2 gene product (chloroplast) [Silene latifolia]
           gi|329755511|gb|AEC04074.1| RNA polymerase beta' subunit
           (chloroplast) [Silene latifolia]
          Length = 1373

 Score = 88.2 bits (217), Expect(2) = 1e-24
 Identities = 40/55 (72%), Positives = 46/55 (83%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TYGNVHLLPK S LWILSG PY SSVV F LH
Sbjct: 438 KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKASRLWILSGRPYRSSVVSFSLH 492



 Score = 52.0 bits (123), Expect(2) = 1e-24
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GAST+NFKE+V+KHIYSDS
Sbjct: 415 ESEQVIAEIRAGASTLNFKEKVRKHIYSDS 444


>ref|XP_006840943.1| hypothetical protein AMTR_s00390p00012910 [Amborella trichopoda]
           gi|548842807|gb|ERN02618.1| hypothetical protein
           AMTR_s00390p00012910 [Amborella trichopoda]
          Length = 1733

 Score = 92.8 bits (229), Expect(2) = 2e-24
 Identities = 43/65 (66%), Positives = 51/65 (78%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLHNIGAG 298
           K+I+  ++GEMH STDVYHAP +TY NVHLLPKTSHLWILSGS Y SSVVPF +H     
Sbjct: 438 KHIYSDSEGEMHWSTDVYHAPDFTYSNVHLLPKTSHLWILSGSSYRSSVVPFSIHKDQDQ 497

Query: 297 TSCHF 283
           T+ +F
Sbjct: 498 TNVYF 502



 Score = 46.6 bits (109), Expect(2) = 2e-24
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR   ST NFKE+V+KHIYSDS
Sbjct: 415 ESEQVIAEIRARTSTFNFKEKVRKHIYSDS 444


>gb|ABV65715.1| RNA polymerase beta'' subunit, partial (chloroplast) [Cannabis
           sativa]
          Length = 1275

 Score = 92.8 bits (229), Expect(2) = 2e-24
 Identities = 43/65 (66%), Positives = 51/65 (78%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLHNIGAG 298
           K+I+  ++GEMH STDVYHAP +TY NVHLLPKTSHLWILSGS Y SSVVPF +H     
Sbjct: 411 KHIYSDSEGEMHWSTDVYHAPDFTYSNVHLLPKTSHLWILSGSSYRSSVVPFSIHKDQDQ 470

Query: 297 TSCHF 283
           T+ +F
Sbjct: 471 TNVYF 475



 Score = 46.6 bits (109), Expect(2) = 2e-24
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR   ST NFKE+V+KHIYSDS
Sbjct: 388 ESEQVIAEIRARTSTFNFKEKVRKHIYSDS 417


>gb|AEX94824.1| RNA polymerase beta' subunit (chloroplast) [Ledebouria cordifolia]
          Length = 1382

 Score = 90.9 bits (224), Expect(2) = 2e-24
 Identities = 41/55 (74%), Positives = 47/55 (85%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  +QGEMH STDVYHAP+YTY NVHLLPKTSHLWIL+GSP  SS+V F LH
Sbjct: 441 KHIYSESQGEMHWSTDVYHAPEYTYSNVHLLPKTSHLWILAGSPCRSSIVSFSLH 495



 Score = 48.1 bits (113), Expect(2) = 2e-24
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDSR 452
           E +QVIAEIR GAST +FKE+V+KHIYS+S+
Sbjct: 418 ESEQVIAEIRAGASTFHFKEKVRKHIYSESQ 448


>gb|AEI27568.1| RNA polymerase beta subunit [Rhamnus utilis]
          Length = 1250

 Score = 91.7 bits (226), Expect(2) = 2e-24
 Identities = 43/65 (66%), Positives = 50/65 (76%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLHNIGAG 298
           K+I+  ++GEMH STDVYHAP++TY NVHLLPKTSHLWILSG    SSVVPF LH     
Sbjct: 397 KHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCRSSVVPFSLHKDQDQ 456

Query: 297 TSCHF 283
           T+ HF
Sbjct: 457 TNVHF 461



 Score = 47.4 bits (111), Expect(2) = 2e-24
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR G  T NFKE+V+KHIYSDS
Sbjct: 374 ESEQVIAEIRAGTYTFNFKEKVRKHIYSDS 403


>ref|YP_001718427.1| RNA polymerase beta'' subunit [Manihot esculenta]
           gi|212288328|sp|B1NWE0.1|RPOC2_MANES RecName:
           Full=DNA-directed RNA polymerase subunit beta'';
           AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
           polymerase subunit beta''; Short=RNA polymerase subunit
           beta'' gi|157695875|gb|ABV66144.1| RNA polymerase beta
           subunit [Manihot esculenta]
          Length = 1393

 Score = 89.0 bits (219), Expect(2) = 3e-24
 Identities = 40/55 (72%), Positives = 47/55 (85%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TY NVHLLPKTSHLWILSGS   SS+VPF LH
Sbjct: 442 KHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGSSCRSSIVPFSLH 496



 Score = 49.7 bits (117), Expect(2) = 3e-24
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GA T+NFKE+V+KHIYSDS
Sbjct: 419 ESEQVIAEIRAGAYTLNFKEKVRKHIYSDS 448


>ref|YP_004769704.1| RNA polymerase beta' subunit [Magnolia kwangsiensis]
           gi|302424170|gb|ADL39046.1| RNA polymerase beta' subunit
           [Magnolia kwangsiensis]
          Length = 1382

 Score = 89.0 bits (219), Expect(2) = 3e-24
 Identities = 40/55 (72%), Positives = 46/55 (83%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP+Y YGNVHLLPKTSHLWILSG P  SS+V F LH
Sbjct: 441 KHIYSDSEGEMHWSTDVYHAPEYRYGNVHLLPKTSHLWILSGGPCRSSIVTFSLH 495



 Score = 49.7 bits (117), Expect(2) = 3e-24
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR G ST NFKE+V+KHIYSDS
Sbjct: 418 ESEQVIAEIRAGTSTFNFKEKVRKHIYSDS 447


>gb|ABV65755.1| RNA polymerase beta'' subunit, partial (chloroplast) [Manihot
           esculenta]
          Length = 1281

 Score = 89.0 bits (219), Expect(2) = 3e-24
 Identities = 40/55 (72%), Positives = 47/55 (85%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TY NVHLLPKTSHLWILSGS   SS+VPF LH
Sbjct: 412 KHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGSSCRSSIVPFSLH 466



 Score = 49.7 bits (117), Expect(2) = 3e-24
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GA T+NFKE+V+KHIYSDS
Sbjct: 389 ESEQVIAEIRAGAYTLNFKEKVRKHIYSDS 418


>gb|AEP25218.1| RNA polymerase C2 [Mollugo verticillata]
          Length = 1088

 Score = 87.8 bits (216), Expect(2) = 4e-24
 Identities = 41/64 (64%), Positives = 49/64 (76%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLHNIGAG 298
           K+I+  ++GEMH STDVYHA ++TYGNVHLLPKTS LWILSG PY SS+V F LH     
Sbjct: 389 KHIYSDSEGEMHWSTDVYHATEFTYGNVHLLPKTSRLWILSGRPYRSSIVNFSLHKDQDQ 448

Query: 297 TSCH 286
           T+ H
Sbjct: 449 TNVH 452



 Score = 50.4 bits (119), Expect(2) = 4e-24
 Identities = 23/30 (76%), Positives = 27/30 (90%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR G ST+NFKE+V+KHIYSDS
Sbjct: 366 ESEQVIAEIRAGTSTLNFKEKVRKHIYSDS 395


>gb|ADO13870.1| RNA polymerase beta subunit [Gonocaryum litorale]
          Length = 1123

 Score = 84.3 bits (207), Expect(2) = 5e-24
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = -3

Query: 477 KNIFILTQGEMHCSTDVYHAPKYTYGNVHLLPKTSHLWILSGSPYTSSVVPFLLH 313
           K+I+  ++GEMH STDVYHAP++TYGNVHLLPKTSHLWIL G P  SS+V   LH
Sbjct: 420 KHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGEPCRSSLVSLSLH 474



 Score = 53.5 bits (127), Expect(2) = 5e-24
 Identities = 25/30 (83%), Positives = 28/30 (93%)
 Frame = -2

Query: 544 EMKQVIAEIRVGASTVNFKERVQKHIYSDS 455
           E +QVIAEIR GAST+NFKE+VQKHIYSDS
Sbjct: 397 ESEQVIAEIRAGASTLNFKEKVQKHIYSDS 426