BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00024484
         (977 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera]   201   3e-54
ref|XP_007221234.1| hypothetical protein PRUPE_ppb019121mg [Prun...   199   5e-53
ref|XP_007213082.1| hypothetical protein PRUPE_ppa021229mg [Prun...   198   1e-52
emb|CAN61694.1| hypothetical protein VITISV_026655 [Vitis vinifera]   196   7e-52
ref|XP_007224141.1| hypothetical protein PRUPE_ppa016115mg [Prun...   194   2e-51
ref|XP_007049837.1| DNA/RNA polymerases superfamily protein [The...   181   3e-48
ref|XP_007032400.1| DNA/RNA polymerases superfamily protein [The...   182   2e-47
ref|XP_007036977.1| DNA/RNA polymerases superfamily protein [The...   180   5e-47
ref|XP_007028165.1| Retrotransposon protein, Ty3-gypsy subclass,...   180   5e-47
ref|XP_007037177.1| DNA/RNA polymerases superfamily protein [The...   180   6e-47
ref|XP_007099710.1| Retrotransposon protein, Ty3-gypsy subclass,...   179   1e-46
gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]           179   1e-46
ref|XP_007023888.1| DNA/RNA polymerases superfamily protein [The...   179   1e-46
gb|ABB46774.2| retrotransposon protein, putative, Ty3-gypsy subc...   178   3e-46
gb|AAM14695.1|AC097446_24 Putative polyprotein [Oryza sativa Jap...   178   3e-46
ref|XP_007010454.1| Uncharacterized protein TCM_044274 [Theobrom...   181   3e-46
ref|XP_007023829.1| DNA/RNA polymerases superfamily protein [The...   177   3e-46
ref|XP_007028176.1| DNA/RNA polymerases superfamily protein [The...   177   3e-46
gb|ABA98185.1| retrotransposon protein, putative, Ty3-gypsy subc...   177   4e-46
gb|ABA96087.1| retrotransposon protein, putative, Ty3-gypsy subc...   177   4e-46

>emb|CAN66189.1| hypothetical protein VITISV_006047 [Vitis vinifera]
          Length = 1573

 Score =  201 bits (511), Expect(2) = 3e-54
 Identities = 113/267 (42%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
 Frame = -3

Query: 831  AQPAHIQKMVNALKRDPEFEKFKAWV---ESNENYECKLSLDGALRFXXXXXXXXXXXXX 661
            A+P  IQ++V A   D   EK KA +   E +EN+   +  DG++RF             
Sbjct: 1138 ARPMVIQRIVEAQVHDEFLEKVKAQLVAGEIDENWS--MYEDGSVRFKGRLCVPKDVELR 1195

Query: 660  XXXX*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*G 481
                 D HR+ YTIHP   KMY D+K+ F W  MKRDIA ++  C++CQQV+ E Q+P  
Sbjct: 1196 NELLADAHRAKYTIHPGNTKMYQDLKRQFXWSGMKRDIAQFVANCQICQQVKAEHQRPAE 1255

Query: 480  LLHPLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSK 301
            LL PLPIP+WKW++I MDFV+GLP+++ K + +WVIVDRLTKSAHFL M T DS+  L+K
Sbjct: 1256 LLQPLPIPKWKWDNITMDFVIGLPRTRSKKNGVWVIVDRLTKSAHFLAMKTTDSMNSLAK 1315

Query: 300  LYVSEIVTAWYSHVYCIGS*WLIYC*VIEECAYTDGY--------ATQL*YN--LHP*SD 151
            LY+ EIV      V  +            +  +T  +         TQL ++   HP +D
Sbjct: 1316 LYIQEIVRLHGIPVSIVSD---------RDPKFTSQFWQSLQRALGTQLNFSTVFHPQTD 1366

Query: 150  G*TERLI*VLEVILRTLVLEFGGSWEE 70
            G +ER+I +LE +LR  VL+FGG+W +
Sbjct: 1367 GQSERVIQILEDMLRACVLDFGGNWAD 1393



 Score = 38.5 bits (88), Expect(2) = 3e-54
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = -2

Query: 61   LCEFSYNNSYQSSIGMAPFE 2
            L EF+YNN YQSSIGMAP+E
Sbjct: 1397 LAEFAYNNXYQSSIGMAPYE 1416


>ref|XP_007221234.1| hypothetical protein PRUPE_ppb019121mg [Prunus persica]
           gi|462417788|gb|EMJ22433.1| hypothetical protein
           PRUPE_ppb019121mg [Prunus persica]
          Length = 552

 Score =  199 bits (506), Expect(2) = 5e-53
 Identities = 104/271 (38%), Positives = 153/271 (56%), Gaps = 10/271 (3%)
 Frame = -3

Query: 852 AIREQMIAQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXX 673
           A+   +  +P  +++++ A  +DP     +  V + +  +C +  DGAL           
Sbjct: 67  ALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNRLYVPND 126

Query: 672 XXXXXXXX*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQ 493
                    + H S + +HP   KMYH +++ +WWP MK++IA Y+++C +CQQV+ ERQ
Sbjct: 127 EALKREILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQQVKAERQ 186

Query: 492 KP*GLLHPLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVE 313
           KP GLL PLPIPEWKWE I MDFV  LP++Q KHD +WVIVDRLTKSAHFLP+    S+ 
Sbjct: 187 KPSGLLQPLPIPEWKWERITMDFVFKLPRTQSKHDGVWVIVDRLTKSAHFLPVRANYSLN 246

Query: 312 KLSKLYVSEIVTAWYSHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN--LH 163
           KL+K+++ EIV      V  +            +  +T        + + TQL ++   H
Sbjct: 247 KLAKIFIDEIVRLHGVPVSIVSD---------RDPRFTSRFWTKLNEAFGTQLQFSTAFH 297

Query: 162 P*SDG*TERLI*VLEVILRTLVLEFGGSWEE 70
           P +DG +ER I  LE +LR   L+F G W+E
Sbjct: 298 PQTDGQSERTIQTLEDMLRACALQFRGDWDE 328



 Score = 36.6 bits (83), Expect(2) = 5e-53
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNSYQ SIGM+PF+
Sbjct: 332 LMEFAYNNSYQVSIGMSPFD 351


>ref|XP_007213082.1| hypothetical protein PRUPE_ppa021229mg [Prunus persica]
            gi|462408947|gb|EMJ14281.1| hypothetical protein
            PRUPE_ppa021229mg [Prunus persica]
          Length = 1194

 Score =  198 bits (503), Expect(2) = 1e-52
 Identities = 104/271 (38%), Positives = 152/271 (56%), Gaps = 10/271 (3%)
 Frame = -3

Query: 852  AIREQMIAQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXX 673
            A+   +  +P  +++++ A  +DP     +  V + +  +C +  DGAL           
Sbjct: 709  ALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNRLYVPND 768

Query: 672  XXXXXXXX*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQ 493
                     + H S + +HP   KMYH +++ +WWP MK+ IA Y+++C +CQQV+ ERQ
Sbjct: 769  EALKREILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKQIAEYVRRCLICQQVKAERQ 828

Query: 492  KP*GLLHPLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVE 313
            KP GLL PLPIPEWKWE I MDFV  LP++Q KHD +WVIVDRLTKSAHFLP+    S+ 
Sbjct: 829  KPSGLLQPLPIPEWKWERITMDFVFKLPQTQSKHDGVWVIVDRLTKSAHFLPVRANYSLN 888

Query: 312  KLSKLYVSEIVTAWYSHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN--LH 163
            KL+K+++ EIV      V  +            +  +T        + + TQL ++   H
Sbjct: 889  KLAKIFIDEIVRLHGVPVSIVSD---------RDPRFTSRFWTKLNEAFGTQLQFSTAFH 939

Query: 162  P*SDG*TERLI*VLEVILRTLVLEFGGSWEE 70
            P +DG +ER I  LE +LR   L+F G W+E
Sbjct: 940  PQTDGQSERTIQTLEHMLRACALQFRGDWDE 970



 Score = 36.6 bits (83), Expect(2) = 1e-52
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61   LCEFSYNNSYQSSIGMAPFE 2
            L EF+YNNSYQ SIGM+PF+
Sbjct: 974  LMEFAYNNSYQVSIGMSPFD 993


>emb|CAN61694.1| hypothetical protein VITISV_026655 [Vitis vinifera]
          Length = 1313

 Score =  196 bits (499), Expect(2) = 7e-52
 Identities = 110/260 (42%), Positives = 151/260 (58%), Gaps = 13/260 (5%)
 Frame = -3

Query: 810  KMVNALKRDPEFEKFKAWV---ESNENYECKLSLDGALRFXXXXXXXXXXXXXXXXX*DF 640
            ++  A   D   EK KA +   E +EN+   +  DG++RF                  D 
Sbjct: 839  RIXEAQVHDEFLEKVKAXLVAGEIDENWS--MYEDGSVRFKGRLCVPKDVELRNELLADA 896

Query: 639  HRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLHPLPI 460
            HR+ YTIHP   KMY D+K+ FWW  MKRDIA ++   ++CQQV+ E Q+P GLL PLPI
Sbjct: 897  HRAKYTIHPGNTKMYQDLKRQFWWSGMKRDIAQFVANFQICQQVKAEHQRPAGLLQPLPI 956

Query: 459  PEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYVSEIV 280
            PEWKW++I MDFV+GLP+++ K + +WVIVD LTKSAHFL M T DS+  L+KLY+ EIV
Sbjct: 957  PEWKWDNITMDFVIGLPRTRSKKNGVWVIVDCLTKSAHFLAMKTTDSMNSLAKLYIQEIV 1016

Query: 279  TAWYSHVYCIGS*WLIYC*VIEECAYTDGY--------ATQL*YN--LHP*SDG*TERLI 130
                  V  +            +  +T  +         TQL +N   HP +DG +ER+I
Sbjct: 1017 RLHGILVSIVSD---------RDPKFTSQFWQSLQRALGTQLNFNTAFHPQTDGQSERVI 1067

Query: 129  *VLEVILRTLVLEFGGSWEE 70
             +LE +LR  VL+FGG+W +
Sbjct: 1068 QILEDMLRACVLDFGGNWAD 1087



 Score = 35.4 bits (80), Expect(2) = 7e-52
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = -2

Query: 61   LCEFSYNNSYQSSIGMAPFE 2
            L EF+YNNSYQSSI  AP+E
Sbjct: 1091 LAEFAYNNSYQSSIXXAPYE 1110


>ref|XP_007224141.1| hypothetical protein PRUPE_ppa016115mg [Prunus persica]
            gi|462421077|gb|EMJ25340.1| hypothetical protein
            PRUPE_ppa016115mg [Prunus persica]
          Length = 1269

 Score =  194 bits (494), Expect(2) = 2e-51
 Identities = 102/271 (37%), Positives = 152/271 (56%), Gaps = 10/271 (3%)
 Frame = -3

Query: 852  AIREQMIAQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXX 673
            A+   +  +P  +++++ A  +DP     +  V + +  +C +  DGAL           
Sbjct: 784  ALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDRTDCSVRNDGALMVGNKLYVPND 843

Query: 672  XXXXXXXX*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQ 493
                     + H S + +HP   KMYH +++ +WWP MK++IA Y+++C +CQQV+ ERQ
Sbjct: 844  EALKREILEEAHESAFAMHPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQQVKAERQ 903

Query: 492  KP*GLLHPLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVE 313
            KP GLL PLPIPEWKWE I MDFV  LP++Q KHD +WVIVDRLTKSA+FLP+    S+ 
Sbjct: 904  KPSGLLQPLPIPEWKWERITMDFVFKLPRTQSKHDGVWVIVDRLTKSAYFLPVRANYSLN 963

Query: 312  KLSKLYVSEIVTAWYSHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN--LH 163
            KL+KL++ EIV      +  +            +  +T        + + TQL ++   H
Sbjct: 964  KLAKLFIDEIVRLHRVPISIVSD---------RDPRFTSRFWTKLNEAFGTQLQFSTAFH 1014

Query: 162  P*SDG*TERLI*VLEVILRTLVLEFGGSWEE 70
              +DG +ER I  LE +LR   L+F G W+E
Sbjct: 1015 SQTDGQSERTIQTLENMLRACALQFRGDWDE 1045



 Score = 35.8 bits (81), Expect(2) = 2e-51
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = -2

Query: 61   LCEFSYNNSYQSSIGMAPF 5
            L EF+YNNSYQ SIGM+PF
Sbjct: 1049 LMEFAYNNSYQVSIGMSPF 1067


>ref|XP_007049837.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508702098|gb|EOX93994.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 811

 Score =  181 bits (459), Expect(2) = 3e-48
 Identities = 97/238 (40%), Positives = 135/238 (56%), Gaps = 10/238 (4%)
 Frame = -3

Query: 756  VESNENYECKLSLDGALRFXXXXXXXXXXXXXXXXX*DFHRSMYTIHPFVNKMYHDMKKM 577
            ++  E  E +LS DG L                    + H S Y +HP   KMY  +K+ 
Sbjct: 467  LQDGEASEFRLSDDGTLMLRDRICVPKDDQLRRAILEEAHSSAYALHPGSTKMYRTIKES 526

Query: 576  FWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLHPLPIPEWKWEHIAMDFVVGLPKSQW 397
            +WWP MKRDIA ++ KC  CQQ++ E QK  G L PLPIPEWKWEH+ MDFV+GLP++Q 
Sbjct: 527  YWWPGMKRDIAKFVAKCLTCQQIKAEHQKSSGTLQPLPIPEWKWEHVTMDFVLGLPRTQS 586

Query: 396  KHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYVSEIVTAWYSHVYCIGS*WLIYC*VI 217
              DAIWVIVDRLTKSAHFL + +  S+E+L++LY+ E+V      +  +           
Sbjct: 587  GKDAIWVIVDRLTKSAHFLAIHSTYSIERLARLYIDEVVRLHGVPISIVSD--------- 637

Query: 216  EECAYT--------DGYATQL*Y--NLHP*SDG*TERLI*VLEVILRTLVLEFGGSWE 73
             +  +T        +   T+L +  + HP +DG +ER I  LE +LR  V++F GSW+
Sbjct: 638  RDPRFTSRFWPKFQEALGTKLRFSTSFHPQTDGQSERTIQTLEDMLRACVIDFIGSWD 695



 Score = 38.5 bits (88), Expect(2) = 3e-48
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNS+QSSIGMAP+E
Sbjct: 700 LVEFAYNNSFQSSIGMAPYE 719


>ref|XP_007032400.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508711429|gb|EOY03326.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1447

 Score =  182 bits (461), Expect(2) = 2e-47
 Identities = 97/265 (36%), Positives = 141/265 (53%), Gaps = 10/265 (3%)
 Frame = -3

Query: 834  IAQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXX 655
            I +P  + K+  A  +D    K     +  +        DG LR+               
Sbjct: 967  IVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLYVPDGDGLRRE 1026

Query: 654  XX*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLL 475
               + H + Y +HP   KMY D+K+++WW  +KRD+A ++ KC VCQQV+ E QKP GLL
Sbjct: 1027 ILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLL 1086

Query: 474  HPLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLY 295
             PLP+PEWKWEHIAMDFV GLP++   +D+IW++VDRLTKSAHFLP+ T     + +++Y
Sbjct: 1087 QPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVY 1146

Query: 294  VSEIVTAWYSHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN--LHP*SDG* 145
            V EIV      +  +               +T        +   T+L ++   HP +DG 
Sbjct: 1147 VDEIVRLHGIPISIVSD---------RGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQ 1197

Query: 144  TERLI*VLEVILRTLVLEFGGSWEE 70
            +ER I  LE +LR  V++ G  WE+
Sbjct: 1198 SERTIQTLEAMLRACVIDLGVRWEQ 1222



 Score = 35.4 bits (80), Expect(2) = 2e-47
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61   LCEFSYNNSYQSSIGMAPFE 2
            L EF+YNNS+Q+SI MAPFE
Sbjct: 1226 LVEFAYNNSFQTSIQMAPFE 1245


>ref|XP_007036977.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508774222|gb|EOY21478.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 878

 Score =  180 bits (457), Expect(2) = 5e-47
 Identities = 97/256 (37%), Positives = 141/256 (55%), Gaps = 10/256 (3%)
 Frame = -3

Query: 807  MVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXXX*DFHRSM 628
            ++ AL+ DP+  K K + +           DG LR+                  + H + 
Sbjct: 595  VIKALE-DPQGRKGKMFTKGT---------DGVLRYGTRLYVPDGDGLRREILEEAHMAA 644

Query: 627  YTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLHPLPIPEWK 448
            Y +HP   KMY D+K+++WW  +KRD+A ++ KC VCQQV+ E QKP GLL PLP+PEWK
Sbjct: 645  YVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWK 704

Query: 447  WEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYVSEIVTAWY 268
            WEHIAMDFV GLP++   +D+IW++VDRLTKSAHFLP+ T     + +++YV EIV    
Sbjct: 705  WEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHG 764

Query: 267  SHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN--LHP*SDG*TERLI*VLE 118
              +  +               +T        +   T+L ++   HP +DG +ER I  LE
Sbjct: 765  IPISIVSD---------RGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLE 815

Query: 117  VILRTLVLEFGGSWEE 70
             +LR  V++ G  WE+
Sbjct: 816  DMLRACVIDLGVRWEQ 831



 Score = 35.4 bits (80), Expect(2) = 5e-47
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNS+Q+SI MAPFE
Sbjct: 835 LVEFAYNNSFQTSIQMAPFE 854


>ref|XP_007028165.1| Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma
           cacao] gi|508716770|gb|EOY08667.1| Retrotransposon
           protein, Ty3-gypsy subclass, putative [Theobroma cacao]
          Length = 521

 Score =  180 bits (457), Expect(2) = 5e-47
 Identities = 97/256 (37%), Positives = 141/256 (55%), Gaps = 10/256 (3%)
 Frame = -3

Query: 807 MVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXXX*DFHRSM 628
           ++ AL+ DP+  K K + +           DG LR+                  + H + 
Sbjct: 60  VIKALE-DPQGRKGKMFTKGT---------DGVLRYGTRLYVPDGDGLRREILEEAHMAA 109

Query: 627 YTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLHPLPIPEWK 448
           Y +HP   KMY D+K+++WW  +KRD+A ++ KC VCQQV+ E QKP GLL PLP+PEWK
Sbjct: 110 YVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWK 169

Query: 447 WEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYVSEIVTAWY 268
           WEHIAMDFV GLP++   +D+IW++VDRLTKSAHFLP+ T     + +++YV EIV    
Sbjct: 170 WEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHG 229

Query: 267 SHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN--LHP*SDG*TERLI*VLE 118
             +  +               +T        +   T+L ++   HP +DG +ER I  LE
Sbjct: 230 IPISIVSD---------RGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLE 280

Query: 117 VILRTLVLEFGGSWEE 70
            +LR  V++ G  WE+
Sbjct: 281 DMLRACVIDLGVRWEQ 296



 Score = 35.4 bits (80), Expect(2) = 5e-47
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNS+Q+SI MAPFE
Sbjct: 300 LVEFAYNNSFQTSIQMAPFE 319


>ref|XP_007037177.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508774422|gb|EOY21678.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 448

 Score =  180 bits (456), Expect(2) = 6e-47
 Identities = 91/226 (40%), Positives = 129/226 (57%), Gaps = 10/226 (4%)
 Frame = -3

Query: 717 DGALRFXXXXXXXXXXXXXXXXX*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGY 538
           DG LR+                  + H + Y +HP   KMY D+K+++WW  +KRD+A +
Sbjct: 7   DGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEF 66

Query: 537 IQKCEVCQQVRVERQKP*GLLHPLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLT 358
           + KC VCQQV+ E QKP GLL PLP+PEWKWEHIAMDFV GLP++   +D+IW++VDRLT
Sbjct: 67  VSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLT 126

Query: 357 KSAHFLPMSTKDSVEKLSKLYVSEIVTAWYSHVYCIGS*WLIYC*VIEECAYT------- 199
           KSAHFLP+ T     + +++YV EIV      +  +               +T       
Sbjct: 127 KSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSD---------RGAQFTSRFWGKL 177

Query: 198 -DGYATQL*YN--LHP*SDG*TERLI*VLEVILRTLVLEFGGSWEE 70
            +   T+L ++   HP +DG +ER I  LE +LR  V++ G  WE+
Sbjct: 178 QEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQ 223



 Score = 35.4 bits (80), Expect(2) = 6e-47
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNS+Q+SI MAPFE
Sbjct: 227 LVEFAYNNSFQTSIQMAPFE 246


>ref|XP_007099710.1| Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma
           cacao] gi|508728428|gb|EOY20325.1| Retrotransposon
           protein, Ty3-gypsy subclass, putative [Theobroma cacao]
          Length = 460

 Score =  179 bits (454), Expect(2) = 1e-46
 Identities = 97/256 (37%), Positives = 140/256 (54%), Gaps = 10/256 (3%)
 Frame = -3

Query: 807 MVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXXX*DFHRSM 628
           ++ AL+ DP+  K K + +           DG LR+                  + H + 
Sbjct: 181 VIKALE-DPQGRKGKMFTKGT---------DGVLRYGTRLYVPDGDGLRREILEEAHMAA 230

Query: 627 YTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLHPLPIPEWK 448
           Y +HP   KMY D+K+++WW  +KRD+A ++ KC VCQQV+ E QKP GLL PLP+PEWK
Sbjct: 231 YVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWK 290

Query: 447 WEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYVSEIVTAWY 268
           WEHIAMDFV GLP++   +D+IW++VDRLTKSAHFLP+ T     + +++YV EIV    
Sbjct: 291 WEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHG 350

Query: 267 SHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*Y--NLHP*SDG*TERLI*VLE 118
             +  +               +T        +   T+L +    HP +DG +ER I  LE
Sbjct: 351 IPISIVSD---------RGAQFTSRFWGKLQEALGTKLDFITAFHPQTDGQSERTIQTLE 401

Query: 117 VILRTLVLEFGGSWEE 70
            +LR  V++ G  WE+
Sbjct: 402 DMLRACVIDLGVRWEQ 417



 Score = 35.4 bits (80), Expect(2) = 1e-46
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNS+Q+SI MAPFE
Sbjct: 421 LVEFAYNNSFQTSIQMAPFE 440


>gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]
          Length = 1554

 Score =  179 bits (454), Expect(2) = 1e-46
 Identities = 97/256 (37%), Positives = 146/256 (57%), Gaps = 2/256 (0%)
 Frame = -3

Query: 831  AQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXX 652
            A+ + + ++     +DP F +FKA V+       +   DG LR+                
Sbjct: 1118 AESSLVSEVKEKQDQDPIFLEFKANVQKQRVLAFEQGGDGVLRYQGRLCVPMVDGLQERI 1177

Query: 651  X*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLH 472
              + H S Y+IHP   KMYHD+++++WW  MK+ IA ++ KC  CQQV+VE Q+P GL  
Sbjct: 1178 MEEAHSSRYSIHPGSTKMYHDLREVYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPVGLAQ 1237

Query: 471  PLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYV 292
             + +PEWKWE I MDF+ GLPKS  +HD+IWVIVD++TKSAHFLP+ T +  E  +KLYV
Sbjct: 1238 RIKLPEWKWEMINMDFITGLPKSHRQHDSIWVIVDQMTKSAHFLPVRTTNIAEDYAKLYV 1297

Query: 291  SEIVTAWYSHVYCIGS*WLIYC*VIEECAYTDGYATQL*YN--LHP*SDG*TERLI*VLE 118
             EIV      +  I      +     + ++  G  +++  +   +P +DG  ER I  LE
Sbjct: 1298 QEIVRLHGIPISIISDRGAQFTAQFWK-SFKKGLGSKVNLSTAFYPQTDGQAERTIHTLE 1356

Query: 117  VILRTLVLEFGGSWEE 70
             +LR  V++F G+W++
Sbjct: 1357 DMLRACVIDFKGNWDD 1372



 Score = 35.0 bits (79), Expect(2) = 1e-46
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = -2

Query: 61   LCEFSYNNSYQSSIGMAPFE 2
            L EF+YNNSY SSI MAP+E
Sbjct: 1376 LIEFAYNNSYHSSIHMAPYE 1395


>ref|XP_007023888.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508779254|gb|EOY26510.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1290

 Score =  179 bits (453), Expect(2) = 1e-46
 Identities = 104/272 (38%), Positives = 149/272 (54%), Gaps = 10/272 (3%)
 Frame = -3

Query: 858  SDAIREQMIAQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXX 679
            S  +R  ++ Q   +QK  + LK+  E +K    ++  E  E +LS DG L         
Sbjct: 827  SFVVRPSLLNQIRELQKFDDWLKQ--EVQK----LQDGEASEFRLSDDGTLMLRDRICVP 880

Query: 678  XXXXXXXXXX*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVE 499
                       + H S Y +HP   KMY  +K+ +WWP MKRDIA ++ KC +CQQ++ E
Sbjct: 881  KDDQLRRAILEEAHSSAYALHPGSTKMYQTIKESYWWPGMKRDIAEFVAKCLICQQIKAE 940

Query: 498  RQKP*GLLHPLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDS 319
             QK  G L PLPIPEWKWEH+ MDFV+GLP++Q   DAIWVI+ RLTKSAHFL + +  S
Sbjct: 941  HQKSSGTLQPLPIPEWKWEHVTMDFVLGLPRTQSGKDAIWVIMGRLTKSAHFLAIHSTYS 1000

Query: 318  VEKLSKLYVSEIVTAWYSHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN-- 169
            +E+L++LY+ E+V      V  +            +  +T        +   T+L ++  
Sbjct: 1001 IERLARLYIDEVVRLHGVPVSIVSD---------RDPRFTSRFWPKFQEALGTKLRFSTA 1051

Query: 168  LHP*SDG*TERLI*VLEVILRTLVLEFGGSWE 73
             HP  DG +ER I  LE +LR  V++F  SW+
Sbjct: 1052 FHPQIDGQSERTIQTLEDMLRACVIDFIRSWD 1083



 Score = 35.4 bits (80), Expect(2) = 1e-46
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61   LCEFSYNNSYQSSIGMAPFE 2
            L EF+YNNS+QSSIGMA +E
Sbjct: 1088 LVEFAYNNSFQSSIGMATYE 1107


>gb|ABB46774.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1695

 Score =  178 bits (451), Expect(2) = 3e-46
 Identities = 102/259 (39%), Positives = 144/259 (55%), Gaps = 5/259 (1%)
 Frame = -3

Query: 831  AQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXX 652
            A+P  I ++  A   DP+ ++ K  +   +         G +                  
Sbjct: 1206 AKPTLIDQVREAQTNDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAI 1265

Query: 651  X*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLH 472
              + H ++Y+IHP   KMY D+K+ FWW  MKR+IA Y+  C+VCQ+V+ E QKP GLL 
Sbjct: 1266 LKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQ 1325

Query: 471  PLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYV 292
            PL IPEWKWE I MDF+ GLPK+   HD+IWVIVDRLTK AHF+P+ T  S  +L++LY+
Sbjct: 1326 PLKIPEWKWEEIGMDFITGLPKTSLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYM 1385

Query: 291  SEIVTAW---YSHVYCIGS*WL--IYC*VIEECAYTDGYATQL*YNLHP*SDG*TERLI* 127
            + IV         V   GS +    +  + EE      ++T      HP +DG TER+  
Sbjct: 1386 ARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTA----YHPQTDGQTERVNQ 1441

Query: 126  VLEVILRTLVLEFGGSWEE 70
            +LE +LR   L+FGGSW++
Sbjct: 1442 ILEDMLRACALDFGGSWDK 1460



 Score = 35.0 bits (79), Expect(2) = 3e-46
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -2

Query: 55   EFSYNNSYQSSIGMAPFE 2
            EFSYNNSYQ+S+ MAP+E
Sbjct: 1466 EFSYNNSYQASLQMAPYE 1483


>gb|AAM14695.1|AC097446_24 Putative polyprotein [Oryza sativa Japonica Group]
          Length = 1680

 Score =  178 bits (451), Expect(2) = 3e-46
 Identities = 102/259 (39%), Positives = 144/259 (55%), Gaps = 5/259 (1%)
 Frame = -3

Query: 831  AQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXX 652
            A+P  I ++  A   DP+ ++ K  +   +         G +                  
Sbjct: 1191 AKPTLIDQVREAQTNDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAI 1250

Query: 651  X*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLH 472
              + H ++Y+IHP   KMY D+K+ FWW  MKR+IA Y+  C+VCQ+V+ E QKP GLL 
Sbjct: 1251 LKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQ 1310

Query: 471  PLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYV 292
            PL IPEWKWE I MDF+ GLPK+   HD+IWVIVDRLTK AHF+P+ T  S  +L++LY+
Sbjct: 1311 PLKIPEWKWEEIGMDFITGLPKTSLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYM 1370

Query: 291  SEIVTAW---YSHVYCIGS*WL--IYC*VIEECAYTDGYATQL*YNLHP*SDG*TERLI* 127
            + IV         V   GS +    +  + EE      ++T      HP +DG TER+  
Sbjct: 1371 ARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTA----YHPQTDGQTERVNQ 1426

Query: 126  VLEVILRTLVLEFGGSWEE 70
            +LE +LR   L+FGGSW++
Sbjct: 1427 ILEDMLRACALDFGGSWDK 1445



 Score = 35.0 bits (79), Expect(2) = 3e-46
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -2

Query: 55   EFSYNNSYQSSIGMAPFE 2
            EFSYNNSYQ+S+ MAP+E
Sbjct: 1451 EFSYNNSYQASLQMAPYE 1468


>ref|XP_007010454.1| Uncharacterized protein TCM_044274 [Theobroma cacao]
            gi|508727367|gb|EOY19264.1| Uncharacterized protein
            TCM_044274 [Theobroma cacao]
          Length = 860

 Score =  181 bits (458), Expect(2) = 3e-46
 Identities = 97/256 (37%), Positives = 141/256 (55%), Gaps = 10/256 (3%)
 Frame = -3

Query: 807  MVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXXX*DFHRSM 628
            ++ AL+ DP+  K K + +           DG LR+                  + H + 
Sbjct: 429  VIKALE-DPQGRKGKMFTKGT---------DGVLRYGTRLYVPDGDGLRREILEEAHMAA 478

Query: 627  YTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLHPLPIPEWK 448
            Y +HP   KMY D+K+++WW  +KRD+A ++ KC VCQQV+ E QKP GLL PLP+PEWK
Sbjct: 479  YVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWK 538

Query: 447  WEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYVSEIVTAWY 268
            WEHIAMDFV GLP++   +D+IW++VDRLTKSAHFLP+ T     + +++YV EIV    
Sbjct: 539  WEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHG 598

Query: 267  SHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN--LHP*SDG*TERLI*VLE 118
              +  +               +T        +   T+L ++   HP +DG +ER I  LE
Sbjct: 599  IPISIVSD---------RGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIKTLE 649

Query: 117  VILRTLVLEFGGSWEE 70
             +LR  V++ G  WE+
Sbjct: 650  DMLRACVIDLGVKWEQ 665



 Score = 32.3 bits (72), Expect(2) = 3e-46
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNS+Q+SI MA FE
Sbjct: 669 LVEFAYNNSFQTSIQMAAFE 688


>ref|XP_007023829.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508779195|gb|EOY26451.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 679

 Score =  177 bits (450), Expect(2) = 3e-46
 Identities = 90/226 (39%), Positives = 128/226 (56%), Gaps = 10/226 (4%)
 Frame = -3

Query: 717 DGALRFXXXXXXXXXXXXXXXXX*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGY 538
           DG LR+                  + H + Y +HP   KMY D+K+++WW  +KRD+A +
Sbjct: 238 DGVLRYGTRLYVPDGDGLRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEF 297

Query: 537 IQKCEVCQQVRVERQKP*GLLHPLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLT 358
           + KC VCQQV+ E QKP GLL PLP+PEWKWEHIAMDFV GLP++   +D+IW++VD+LT
Sbjct: 298 VSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDQLT 357

Query: 357 KSAHFLPMSTKDSVEKLSKLYVSEIVTAWYSHVYCIGS*WLIYC*VIEECAYT------- 199
           KSAHFLP+ T       +++YV EIV      +  +               +T       
Sbjct: 358 KSAHFLPVKTTYGAAHYARVYVDEIVRLHGIPISIVSD---------RGAQFTSRFWGKL 408

Query: 198 -DGYATQL*YN--LHP*SDG*TERLI*VLEVILRTLVLEFGGSWEE 70
            +   T+L ++   HP +DG +ER I  LE +LR  V++ G  WE+
Sbjct: 409 QEALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQ 454



 Score = 35.4 bits (80), Expect(2) = 3e-46
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNS+Q+SI MAPFE
Sbjct: 458 LVEFAYNNSFQTSIQMAPFE 477


>ref|XP_007028176.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508716781|gb|EOY08678.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 666

 Score =  177 bits (450), Expect(2) = 3e-46
 Identities = 96/256 (37%), Positives = 140/256 (54%), Gaps = 10/256 (3%)
 Frame = -3

Query: 807  MVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXXX*DFHRSM 628
            ++ AL+ DP+  K K + +           DG LR+                  + H + 
Sbjct: 312  VIKALE-DPQGRKGKMFTKGT---------DGVLRYGTRLYVPDGDGLRRKILEEAHMAA 361

Query: 627  YTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLHPLPIPEWK 448
            Y +HP   KMY D+K+++WW  +KRD+A ++ KC VCQQV+ E QKP GLL PLP+PEWK
Sbjct: 362  YVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWK 421

Query: 447  WEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYVSEIVTAWY 268
            WEHIAMDFV GLP++   +D+IW++VDRLTKSAHFL + T     + +++YV EIV    
Sbjct: 422  WEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLSVKTTYGAAQYARVYVDEIVRLHG 481

Query: 267  SHVYCIGS*WLIYC*VIEECAYT--------DGYATQL*YN--LHP*SDG*TERLI*VLE 118
              +  +               +T        +   T+L ++   HP +DG +ER I  LE
Sbjct: 482  IPISIVSD---------RGAQFTSRFWGKLQEALGTKLDFSTTFHPQTDGQSERTIQTLE 532

Query: 117  VILRTLVLEFGGSWEE 70
             +LR  V++ G  WE+
Sbjct: 533  DMLRACVIDLGVKWEQ 548



 Score = 35.4 bits (80), Expect(2) = 3e-46
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = -2

Query: 61  LCEFSYNNSYQSSIGMAPFE 2
           L EF+YNNS+Q+SI MAPFE
Sbjct: 552 LVEFAYNNSFQTSIQMAPFE 571


>gb|ABA98185.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1699

 Score =  177 bits (450), Expect(2) = 4e-46
 Identities = 94/195 (48%), Positives = 126/195 (64%), Gaps = 5/195 (2%)
 Frame = -3

Query: 639  HRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLHPLPI 460
            H ++Y+IHP   KMY D+K+ FWW  MKR+IA YI  C+VCQ+V+ E QKP GLL PL I
Sbjct: 1274 HDTLYSIHPGTTKMYQDLKERFWWASMKREIAEYIAVCDVCQRVKAEHQKPAGLLQPLKI 1333

Query: 459  PEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYVSEIV 280
            PEWKWE I MDF+ GLP++   HD+IWVIVDRLTK AHF+P+ T  S  +L++LY++ IV
Sbjct: 1334 PEWKWEEIGMDFITGLPRTSSSHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIV 1393

Query: 279  TAW---YSHVYCIGS*WL--IYC*VIEECAYTDGYATQL*YNLHP*SDG*TERLI*VLEV 115
                     V   GS +    +  + EE      ++T      HP +DG TER+  +LE 
Sbjct: 1394 CLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTA----YHPQTDGQTERVNQILED 1449

Query: 114  ILRTLVLEFGGSWEE 70
            +LR   L+FGGSW++
Sbjct: 1450 MLRACALDFGGSWDK 1464



 Score = 35.0 bits (79), Expect(2) = 4e-46
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -2

Query: 55   EFSYNNSYQSSIGMAPFE 2
            EFSYNNSYQ+S+ MAP+E
Sbjct: 1470 EFSYNNSYQASLQMAPYE 1487


>gb|ABA96087.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1111

 Score =  177 bits (450), Expect(2) = 4e-46
 Identities = 101/259 (38%), Positives = 144/259 (55%), Gaps = 5/259 (1%)
 Frame = -3

Query: 831  AQPAHIQKMVNALKRDPEFEKFKAWVESNENYECKLSLDGALRFXXXXXXXXXXXXXXXX 652
            A+P  I ++  A   DP+ ++ K  +   +         G +                  
Sbjct: 622  AKPTLIDQVREAQNNDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAV 681

Query: 651  X*DFHRSMYTIHPFVNKMYHDMKKMFWWP*MKRDIAGYIQKCEVCQQVRVERQKP*GLLH 472
              + H ++Y+IHP   KMY D+K+ FWW  MKR+IA Y+  C+VCQ+V+ E QKP GLL 
Sbjct: 682  LKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQ 741

Query: 471  PLPIPEWKWEHIAMDFVVGLPKSQWKHDAIWVIVDRLTKSAHFLPMSTKDSVEKLSKLYV 292
            PL IPEWKWE I MDF+ GLP++   HD+IWVIVDRLTK AHF+P+ T  S  +L++LY+
Sbjct: 742  PLKIPEWKWEEIGMDFITGLPRTSLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYM 801

Query: 291  SEIVTAW---YSHVYCIGS*WL--IYC*VIEECAYTDGYATQL*YNLHP*SDG*TERLI* 127
            + IV         V   GS +    +  + EE      ++T      HP +DG TER+  
Sbjct: 802  ARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTA----YHPRTDGQTERVNQ 857

Query: 126  VLEVILRTLVLEFGGSWEE 70
            +LE +LR   L+FGGSW++
Sbjct: 858  ILEDMLRACALDFGGSWDK 876



 Score = 35.0 bits (79), Expect(2) = 4e-46
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -2

Query: 55  EFSYNNSYQSSIGMAPFE 2
           EFSYNNSYQ+S+ MAP+E
Sbjct: 882 EFSYNNSYQTSLQMAPYE 899