BLASTX nr result
ID: Cocculus23_contig00024385
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00024385
(747 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC35053.1| Cold-inducible RNA-binding protein [Morus notabilis] 143 6e-32
ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protei... 140 5e-31
ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arab... 127 5e-27
ref|NP_190188.1| RNA recognition motif-containing protein [Arabi... 125 1e-26
ref|XP_002533105.1| cold-inducible RNA binding protein, putative... 124 3e-26
ref|XP_002299889.1| RNA recognition motif-containing family prot... 124 3e-26
ref|XP_006424765.1| hypothetical protein CICLE_v10029673mg [Citr... 122 1e-25
ref|XP_006363377.1| PREDICTED: cold-inducible RNA-binding protei... 122 2e-25
ref|XP_006292104.1| hypothetical protein CARUB_v10018300mg [Caps... 122 2e-25
ref|XP_006649858.1| PREDICTED: glycine-rich RNA-binding protein ... 121 2e-25
ref|XP_006848599.1| hypothetical protein AMTR_s00168p00066520 [A... 121 3e-25
ref|XP_006279867.1| hypothetical protein CARUB_v10028559mg [Caps... 120 4e-25
ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protei... 120 4e-25
ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protei... 119 9e-25
ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp.... 119 1e-24
ref|XP_007208554.1| hypothetical protein PRUPE_ppa024320mg [Prun... 118 2e-24
ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein ... 118 2e-24
ref|XP_004294595.1| PREDICTED: polyadenylate-binding protein, cy... 115 2e-23
ref|XP_004981486.1| PREDICTED: glycine-rich RNA-binding protein ... 114 5e-23
ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea ma... 112 1e-22
>gb|EXC35053.1| Cold-inducible RNA-binding protein [Morus notabilis]
Length = 94
Score = 143 bits (361), Expect = 6e-32
Identities = 71/89 (79%), Positives = 81/89 (91%)
Frame = +2
Query: 110 SSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKAL 289
SSQLFVSRLSSYTTN+ LK+LFSPFGE+ EARLV D +TQRPKGFGFVTYESE++AQKAL
Sbjct: 6 SSQLFVSRLSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVEAQKAL 65
Query: 290 KAMDGRIVRGRLIFVEVAKTTTPGKSGTA 376
KAM+GRIV GRLIFVEVAKT+ PG+ T+
Sbjct: 66 KAMNGRIVDGRLIFVEVAKTSKPGEEATS 94
>ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|297746123|emb|CBI16179.3| unnamed protein product
[Vitis vinifera]
Length = 112
Score = 140 bits (353), Expect = 5e-31
Identities = 66/94 (70%), Positives = 82/94 (87%)
Frame = +2
Query: 92 FFKRSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEI 271
F R +SS++FV+RLS YTTN+EL E+FSPFG + +ARL+KD +TQRPKGFGFV +ESE+
Sbjct: 18 FSARRFSSEIFVTRLSGYTTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEV 77
Query: 272 DAQKALKAMDGRIVRGRLIFVEVAKTTTPGKSGT 373
DA+KALKAM+GRIVRGRLIFVE+AKTT PG+ T
Sbjct: 78 DAEKALKAMNGRIVRGRLIFVEIAKTTRPGEDAT 111
>ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata] gi|297323288|gb|EFH53709.1| hypothetical protein
ARALYDRAFT_905782 [Arabidopsis lyrata subsp. lyrata]
Length = 102
Score = 127 bits (318), Expect = 5e-27
Identities = 59/81 (72%), Positives = 76/81 (93%)
Frame = +2
Query: 110 SSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKAL 289
S+QLFVSRLS+YTT++ L++LFSPFG+IKEARL++D TQRPKGFGF+T+ESE DA+KAL
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFESEDDARKAL 65
Query: 290 KAMDGRIVRGRLIFVEVAKTT 352
K++DG+IV GRLIFVEVAK++
Sbjct: 66 KSLDGKIVEGRLIFVEVAKSS 86
>ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like
[Arabidopsis thaliana] gi|46931202|gb|AAT06405.1|
At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis
thaliana] gi|332644581|gb|AEE78102.1| RNA recognition
motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 125 bits (315), Expect = 1e-26
Identities = 59/87 (67%), Positives = 77/87 (88%)
Frame = +2
Query: 110 SSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKAL 289
S+QLFVSRLS+YTT++ L++LFSPFG+IKEARL++D TQRPKGFGF+T++SE DA+KAL
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 290 KAMDGRIVRGRLIFVEVAKTTTPGKSG 370
K++DG+IV GRLIFVEVAK ++G
Sbjct: 66 KSLDGKIVDGRLIFVEVAKNAEEVRAG 92
>ref|XP_002533105.1| cold-inducible RNA binding protein, putative [Ricinus communis]
gi|223527096|gb|EEF29277.1| cold-inducible RNA binding
protein, putative [Ricinus communis]
Length = 94
Score = 124 bits (312), Expect = 3e-26
Identities = 62/88 (70%), Positives = 75/88 (85%)
Frame = +2
Query: 113 SQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALK 292
SQLFV RLS YTTN++L++LFSPFG +KEARLV D RTQ+PKGFGFVT++SE AQKALK
Sbjct: 7 SQLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQKALK 66
Query: 293 AMDGRIVRGRLIFVEVAKTTTPGKSGTA 376
AM+GRIV GRL+FVEVAK+ G+ +A
Sbjct: 67 AMNGRIVDGRLLFVEVAKSINSGEDASA 94
>ref|XP_002299889.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222847147|gb|EEE84694.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 88
Score = 124 bits (312), Expect = 3e-26
Identities = 63/79 (79%), Positives = 68/79 (86%)
Frame = +2
Query: 116 QLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKA 295
QLFVSRLSSYTTN ELK LFSPFG + EARLV + +T RPKGFGFVT+ESE DA KALKA
Sbjct: 8 QLFVSRLSSYTTNHELKRLFSPFGAVSEARLVVESKTLRPKGFGFVTFESEADAHKALKA 67
Query: 296 MDGRIVRGRLIFVEVAKTT 352
M+GRIV GRLIFVEVAK T
Sbjct: 68 MNGRIVNGRLIFVEVAKDT 86
>ref|XP_006424765.1| hypothetical protein CICLE_v10029673mg [Citrus clementina]
gi|568870147|ref|XP_006488271.1| PREDICTED: glycine-rich
RNA-binding protein 4, mitochondrial-like [Citrus
sinensis] gi|557526699|gb|ESR38005.1| hypothetical
protein CICLE_v10029673mg [Citrus clementina]
Length = 94
Score = 122 bits (306), Expect = 1e-25
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +2
Query: 101 RSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQ 280
++ +QLFVSRLSSY T KE K LFS FG + +A+L+ D +TQRPKGFGF+T++SE DAQ
Sbjct: 3 KAQGAQLFVSRLSSYITTKEFKALFSRFGVVTDAKLITDPKTQRPKGFGFITFQSEDDAQ 62
Query: 281 KALKAMDGRIVRGRLIFVEVAKTTTPG 361
KALK MDGRIV GRLIFVEVAK+ +PG
Sbjct: 63 KALKTMDGRIVNGRLIFVEVAKSRSPG 89
>ref|XP_006363377.1| PREDICTED: cold-inducible RNA-binding protein-like [Solanum
tuberosum]
Length = 125
Score = 122 bits (305), Expect = 2e-25
Identities = 61/87 (70%), Positives = 75/87 (86%)
Frame = +2
Query: 116 QLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKA 295
QLFV+RLS YTT+++LK+LFSPFG + EARLVKD RTQRPKGFGFVT+ESE DAQ AL +
Sbjct: 37 QLFVNRLSFYTTSEQLKKLFSPFGVVTEARLVKDPRTQRPKGFGFVTFESEADAQNALNS 96
Query: 296 MDGRIVRGRLIFVEVAKTTTPGKSGTA 376
++GRIV GRLIFVEVA+TT ++ T+
Sbjct: 97 LNGRIVDGRLIFVEVAETTEAVENKTS 123
>ref|XP_006292104.1| hypothetical protein CARUB_v10018300mg [Capsella rubella]
gi|482560811|gb|EOA25002.1| hypothetical protein
CARUB_v10018300mg [Capsella rubella]
Length = 100
Score = 122 bits (305), Expect = 2e-25
Identities = 57/79 (72%), Positives = 73/79 (92%)
Frame = +2
Query: 110 SSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKAL 289
S+QLFVSRLS+Y T++ L++LFS FG+IKEARL++D +TQRPKGFGF+TYESE DA+KA+
Sbjct: 6 SAQLFVSRLSAYATDQSLRQLFSQFGQIKEARLIRDSKTQRPKGFGFITYESEDDARKAM 65
Query: 290 KAMDGRIVRGRLIFVEVAK 346
K++DG+IV GRLIFVEVAK
Sbjct: 66 KSLDGKIVDGRLIFVEVAK 84
>ref|XP_006649858.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
[Oryza brachyantha]
Length = 105
Score = 121 bits (304), Expect = 2e-25
Identities = 56/88 (63%), Positives = 76/88 (86%)
Frame = +2
Query: 83 NRLFFKRSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYE 262
+R+ +S+S+++FVSRLS YTT +ELK +F+PFG ++EARLV+D +T RPKGFGFV Y
Sbjct: 13 SRMVGAKSFSTEIFVSRLSFYTTEEELKNIFTPFGAVEEARLVRDNQTGRPKGFGFVKYS 72
Query: 263 SEIDAQKALKAMDGRIVRGRLIFVEVAK 346
S+ +A+KA+KAMDGRI+RGRLIFVE+AK
Sbjct: 73 SQAEAEKAVKAMDGRILRGRLIFVEIAK 100
>ref|XP_006848599.1| hypothetical protein AMTR_s00168p00066520 [Amborella trichopoda]
gi|548851921|gb|ERN10180.1| hypothetical protein
AMTR_s00168p00066520 [Amborella trichopoda]
Length = 125
Score = 121 bits (303), Expect = 3e-25
Identities = 60/88 (68%), Positives = 72/88 (81%)
Frame = +2
Query: 83 NRLFFKRSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYE 262
NR F R +SS+LFVSRLS Y+T + LK+ FSPFGE+ EARLV D T RPKG+GF+ Y+
Sbjct: 22 NRPAFSRGFSSELFVSRLSFYSTEQSLKDAFSPFGEVIEARLVIDKATLRPKGYGFIRYQ 81
Query: 263 SEIDAQKALKAMDGRIVRGRLIFVEVAK 346
SEI+AQKA+KAMDGR + GRLIFVEVAK
Sbjct: 82 SEIEAQKAMKAMDGRFLGGRLIFVEVAK 109
>ref|XP_006279867.1| hypothetical protein CARUB_v10028559mg [Capsella rubella]
gi|482548571|gb|EOA12765.1| hypothetical protein
CARUB_v10028559mg [Capsella rubella]
Length = 98
Score = 120 bits (302), Expect = 4e-25
Identities = 57/82 (69%), Positives = 73/82 (89%)
Frame = +2
Query: 101 RSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQ 280
+ Y++QLFVSRLS+YTT + L++LFSPFG+I EARL+KD +TQRPKGFGF+T++SE DAQ
Sbjct: 3 KRYTAQLFVSRLSAYTTEQSLRQLFSPFGQITEARLIKDQQTQRPKGFGFITFKSENDAQ 62
Query: 281 KALKAMDGRIVRGRLIFVEVAK 346
KALKA++G+IV RLIFVE AK
Sbjct: 63 KALKALNGKIVDSRLIFVEAAK 84
>ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis
sativus]
Length = 95
Score = 120 bits (302), Expect = 4e-25
Identities = 60/88 (68%), Positives = 72/88 (81%)
Frame = +2
Query: 113 SQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALK 292
S+LF+SRLSSYTT + LK LFSPFG I EARL++D +T+RPKGFGFVT++S +A+KALK
Sbjct: 7 SELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALK 66
Query: 293 AMDGRIVRGRLIFVEVAKTTTPGKSGTA 376
AMDGRIV GRLIFVE AKT G T+
Sbjct: 67 AMDGRIVDGRLIFVEFAKTEKHGVDPTS 94
>ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 1
[Cucumis sativus] gi|449435013|ref|XP_004135290.1|
PREDICTED: cold-inducible RNA-binding protein B-like
isoform 2 [Cucumis sativus]
Length = 89
Score = 119 bits (299), Expect = 9e-25
Identities = 59/83 (71%), Positives = 70/83 (84%)
Frame = +2
Query: 113 SQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALK 292
S+LF+SRLSSYTT + LK LFSPFG I EARL++D +T+RPKGFGFVT++S +A+KALK
Sbjct: 7 SELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALK 66
Query: 293 AMDGRIVRGRLIFVEVAKTTTPG 361
AMDGRIV GRLIFVE AKT G
Sbjct: 67 AMDGRIVDGRLIFVEFAKTGDMG 89
>ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 119 bits (298), Expect = 1e-24
Identities = 55/82 (67%), Positives = 74/82 (90%)
Frame = +2
Query: 101 RSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQ 280
+ +++QLFVSRLS+YTT++ L++LF+PFG+I EARL++D +TQRPKGFGF+T+ESE DAQ
Sbjct: 3 KRFTTQLFVSRLSAYTTDQSLRQLFAPFGQIIEARLIRDQQTQRPKGFGFITFESEDDAQ 62
Query: 281 KALKAMDGRIVRGRLIFVEVAK 346
ALKA++G+IV GRLIFVE AK
Sbjct: 63 NALKALNGKIVNGRLIFVEAAK 84
>ref|XP_007208554.1| hypothetical protein PRUPE_ppa024320mg [Prunus persica]
gi|462404196|gb|EMJ09753.1| hypothetical protein
PRUPE_ppa024320mg [Prunus persica]
Length = 94
Score = 118 bits (295), Expect = 2e-24
Identities = 57/79 (72%), Positives = 71/79 (89%)
Frame = +2
Query: 110 SSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKAL 289
SSQLFV+RLSS+T N++LK LFSPFG++ EAR+V D TQRPKGFGFVTY+S+++AQKAL
Sbjct: 6 SSQLFVNRLSSFTNNEQLKRLFSPFGDVTEARMVVDRITQRPKGFGFVTYKSDVEAQKAL 65
Query: 290 KAMDGRIVRGRLIFVEVAK 346
KAM+GR+V GRLIFVE A+
Sbjct: 66 KAMNGRMVDGRLIFVEFAQ 84
>ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 108
Score = 118 bits (295), Expect = 2e-24
Identities = 55/93 (59%), Positives = 75/93 (80%)
Frame = +2
Query: 83 NRLFFKRSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYE 262
+R+ + +S+++FVS+LS YTT +ELK +FSPFG I+EARL++D +T RPKGFGFV Y
Sbjct: 16 SRVAGTKGFSTEIFVSKLSFYTTEEELKNIFSPFGAIEEARLMRDNQTGRPKGFGFVKYS 75
Query: 263 SEIDAQKALKAMDGRIVRGRLIFVEVAKTTTPG 361
S++ A+KA+KAMDGRI+RGR+IFVE AK G
Sbjct: 76 SQVAAEKAVKAMDGRIIRGRIIFVETAKERDTG 108
>ref|XP_004294595.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like isoform 2 [Fragaria vesca subsp. vesca]
Length = 91
Score = 115 bits (287), Expect = 2e-23
Identities = 54/77 (70%), Positives = 69/77 (89%)
Frame = +2
Query: 113 SQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALK 292
S LFVSRLSS+T+ ++L+++FSPFG++ EARLV D TQRPKGFGFVTY+SE++AQKA+K
Sbjct: 7 STLFVSRLSSFTSKEKLRQMFSPFGDVTEARLVIDPNTQRPKGFGFVTYKSEVEAQKAIK 66
Query: 293 AMDGRIVRGRLIFVEVA 343
MDGR+V GRL+FVEVA
Sbjct: 67 VMDGRMVDGRLLFVEVA 83
>ref|XP_004981486.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
isoform X1 [Setaria italica]
gi|514813407|ref|XP_004981487.1| PREDICTED: glycine-rich
RNA-binding protein 4, mitochondrial-like isoform X2
[Setaria italica]
Length = 104
Score = 114 bits (284), Expect = 5e-23
Identities = 56/94 (59%), Positives = 78/94 (82%), Gaps = 1/94 (1%)
Frame = +2
Query: 68 RLVDLN-RLFFKRSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGF 244
R+V L+ ++ R +S+++FVSRLS YTT +ELK++FSPFG +KEARL++D +T R KGF
Sbjct: 7 RMVGLSSQVLGMRCFSTEIFVSRLSFYTTEEELKDVFSPFGNVKEARLMRDSQTGRLKGF 66
Query: 245 GFVTYESEIDAQKALKAMDGRIVRGRLIFVEVAK 346
GFV Y S+ +A+KA+KAM GRI+RGRLIFVE+A+
Sbjct: 67 GFVNYSSQAEAEKAVKAMHGRILRGRLIFVEMAQ 100
>ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea mays]
gi|223975005|gb|ACN31690.1| unknown [Zea mays]
gi|414887554|tpg|DAA63568.1| TPA: hypothetical protein
ZEAMMB73_633512 [Zea mays]
Length = 103
Score = 112 bits (281), Expect = 1e-22
Identities = 52/82 (63%), Positives = 71/82 (86%)
Frame = +2
Query: 101 RSYSSQLFVSRLSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQ 280
R +S+++FVSRLS YTT +E K++FSPFG ++EARL++D +T R KGFGFV Y S+ +A+
Sbjct: 17 RCFSTEIFVSRLSFYTTEEEFKDIFSPFGTVEEARLMRDHQTGRMKGFGFVKYSSQAEAE 76
Query: 281 KALKAMDGRIVRGRLIFVEVAK 346
KA+KAMDG+I+RGRLIFVE+AK
Sbjct: 77 KAVKAMDGKILRGRLIFVEMAK 98