BLASTX nr result
ID: Cocculus23_contig00024173
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00024173
(523 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymeras... 66 4e-09
gb|AGJ51247.1| RNA polymerase beta'' subunit (chloroplast) [Sola... 66 4e-09
ref|YP_635629.1| RNA polymerase beta'' subunit [Solanum tuberosu... 66 4e-09
ref|YP_538838.1| RNA polymerase beta'' subunit [Solanum bulbocas... 66 4e-09
ref|YP_008563078.1| RNA polymerase beta' subunit (chloroplast) [... 66 4e-09
sp|Q2VEI6.1|RPOC2_SOLTU RecName: Full=DNA-directed RNA polymeras... 66 4e-09
sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymeras... 66 4e-09
sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymeras... 66 4e-09
ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacu... 66 4e-09
prf||1211235K rpoC-like ORF 862 66 4e-09
ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) ... 66 4e-09
ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana ... 66 4e-09
ref|XP_006356782.1| PREDICTED: DNA-directed RNA polymerase subun... 66 4e-09
gb|ADV19263.1| DNA-directed RNA polymerase subunit beta-like pro... 66 4e-09
ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana toment... 66 4e-09
ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna] 66 4e-09
ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia trip... 66 6e-09
gb|AHN13527.1| RNA polymerase beta' subunit (chloroplast) [Prunu... 66 6e-09
ref|YP_009020028.1| RNA polymerase beta' subunit [Prunus mume] g... 66 6e-09
ref|YP_009019878.1| RNA polymerase beta' subunit (chloroplast) [... 66 6e-09
>sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|2924258|emb|CAA77410.1| RNA polymerase beta'' subunit
[Nicotiana tabacum] gi|77799548|dbj|BAE46637.1| RNA
polymerase beta'' subunit [Nicotiana sylvestris]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>gb|AGJ51247.1| RNA polymerase beta'' subunit (chloroplast) [Solanum carolinense]
Length = 1395
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>ref|YP_635629.1| RNA polymerase beta'' subunit [Solanum tuberosum]
gi|88656794|gb|ABD47047.1| RNA polymerase beta' subunit
[Solanum tuberosum]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>ref|YP_538838.1| RNA polymerase beta'' subunit [Solanum bulbocastanum]
gi|122201835|sp|Q2MIJ7.1|RPOC2_SOLBU RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|84371885|gb|ABC56203.1| RNA polymerase beta' subunit
[Solanum bulbocastanum]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>ref|YP_008563078.1| RNA polymerase beta' subunit (chloroplast) [Solanum lycopersicum]
gi|544170661|ref|AP_004918.1| RNA polymerase beta'' chain
(chloroplast) [Solanum lycopersicum]
gi|122201793|sp|Q2MIB0.1|RPOC2_SOLLC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|84371973|gb|ABC56290.1| RNA polymerase beta' subunit
(chloroplast) [Solanum lycopersicum]
gi|89241661|emb|CAJ32383.1| RNA polymerase beta'' chain
[Solanum lycopersicum]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>sp|Q2VEI6.1|RPOC2_SOLTU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|82754619|gb|ABB90033.1| RNA polymerase beta II chain
[Solanum tuberosum]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|80750911|dbj|BAE47987.1| RNA polymerase beta'' subunit
[Nicotiana tomentosiformis]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|20068321|emb|CAC88034.1| RNA polymerase beta II
subunit [Atropa belladonna]
Length = 1389
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1287 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1334
>ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|126165910|ref|YP_358662.2| RNA polymerase beta''
subunit [Nicotiana sylvestris]
Length = 1388
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1286 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1333
>prf||1211235K rpoC-like ORF 862
Length = 862
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 760 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 807
>ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) [Capsicum annuum]
gi|401065922|gb|AFP90766.1| RNA polymerase beta'' subunit
(chloroplast) [Capsicum annuum]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
gi|347453891|gb|AEO95549.1| RNA polymerase beta'' subunit
(chloroplast) [Nicotiana undulata]
gi|347454002|gb|AEO95659.1| RNA polymerase beta'' subunit
[synthetic construct]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>ref|XP_006356782.1| PREDICTED: DNA-directed RNA polymerase subunit beta''-like [Solanum
tuberosum] gi|329124572|gb|AEB72129.1| RNA polymerase
beta' subunit (chloroplast) [Solanum tuberosum]
gi|329124659|gb|AEB72215.1| RNA polymerase beta' subunit
(chloroplast) [Solanum tuberosum]
Length = 1392
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1290 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1337
>gb|ADV19263.1| DNA-directed RNA polymerase subunit beta-like protein [Helleborus
orientalis]
Length = 111
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 48 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 95
>ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana tomentosiformis]
Length = 1388
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1286 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1333
>ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna]
Length = 1385
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1283 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVH 1330
>ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia tripetala]
gi|608608394|gb|AHW51948.1| RNA polymerase beta'' subunit
[Magnolia tripetala]
Length = 1382
Score = 65.9 bits (159), Expect = 6e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1280 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVH 1327
>gb|AHN13527.1| RNA polymerase beta' subunit (chloroplast) [Prunus kansuensis]
Length = 1368
Score = 65.9 bits (159), Expect = 6e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1284 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVH 1331
>ref|YP_009020028.1| RNA polymerase beta' subunit [Prunus mume]
gi|589061043|gb|AHK26864.1| RNA polymerase beta' subunit
[Prunus mume]
Length = 1368
Score = 65.9 bits (159), Expect = 6e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1284 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVH 1331
>ref|YP_009019878.1| RNA polymerase beta' subunit (chloroplast) [Azadirachta indica]
gi|586947525|gb|AHJ91308.1| RNA polymerase beta' subunit
(chloroplast) [Azadirachta indica]
Length = 1395
Score = 65.9 bits (159), Expect = 6e-09
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1
Query: 133 NEAIFQETIRVLAGVALRGHIDCLKGLKESTVLEGTIPVGMEFRGLVH 276
+EA FQET RVLA ALRG ID LKGLKE+ VL G IPVG F+GLVH
Sbjct: 1293 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFKGLVH 1340