BLASTX nr result

ID: Cocculus23_contig00024089 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00024089
         (722 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006427530.1| hypothetical protein CICLE_v10026302mg [Citr...    62   3e-07
emb|CAN79997.1| hypothetical protein VITISV_035120 [Vitis vinifera]    57   5e-06
ref|XP_004292736.1| PREDICTED: uncharacterized protein LOC101313...    57   8e-06

>ref|XP_006427530.1| hypothetical protein CICLE_v10026302mg [Citrus clementina]
           gi|557529520|gb|ESR40770.1| hypothetical protein
           CICLE_v10026302mg [Citrus clementina]
          Length = 262

 Score = 61.6 bits (148), Expect = 3e-07
 Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
 Frame = +2

Query: 2   RIHLKRVMATLKLNYDEERTRYESMKRFKNMKVESASKMIATSDVSKETSSEQPCFTEAR 181
           R +LK  +ATL+L+++++R   ES+KR K   +   S  I  +  S+E    Q       
Sbjct: 144 RRNLKNKLATLRLSFEQQRAENESLKRMKLDVLSQQSMEIVRASGSQEAILNQ------- 196

Query: 182 PIGHTAISPPSDKSRELTAA--VC---PPSLPSTSCEPEKKNATVQERNSFLLPDLNLPV 346
              H  +    D SR + ++   C    P  P  S E E+ +      +SFLLPDLNLPV
Sbjct: 197 ---HYQMKVLCDPSRVILSSHGACNDVKPLPPHGSSEVERGS----NGSSFLLPDLNLPV 249

Query: 347 EVDSDSETLYGMS 385
           + DSDS  LYG+S
Sbjct: 250 DPDSDSGNLYGVS 262


>emb|CAN79997.1| hypothetical protein VITISV_035120 [Vitis vinifera]
          Length = 440

 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
 Frame = +2

Query: 2   RIHLKRVMATLKLNYDEERTRYESMKRFK---NMKVESASKMIATSDVSKETSSEQPCFT 172
           R +LK+ +ATL++ + E+R   ES+KR K   ++ +   +   AT +  +    E+P   
Sbjct: 318 RTYLKKELATLRVTFKEQRATNESLKRMKIDFHLNLVKGTGAAATDEAKEAIPREEPHKM 377

Query: 173 EARPIGHT-AISPPSDKSRELTAAVCPPSLPSTSCEPEKKNATVQERNSFLLPDLN-LPV 346
           E     H  +I P    S +L        L S SC+ +  +A     N F+LPDLN + +
Sbjct: 378 EGPSEDHAPSIVPVQALSNDL--------LQSESCQVKMNDA--PRDNVFMLPDLNMMAM 427

Query: 347 EVDSDSETLYGM 382
           E D  SETLYGM
Sbjct: 428 EDDIGSETLYGM 439


>ref|XP_004292736.1| PREDICTED: uncharacterized protein LOC101313281 [Fragaria vesca
           subsp. vesca]
          Length = 275

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
 Frame = +2

Query: 2   RIHLKRVMATLKLNYDEERTRYESMKRFK---NMKVESASKMIATSDVSKETSSEQPCFT 172
           R  L++ +ATL+  + E+R + E++KR K   N+   SA+ +IA  D ++   + Q    
Sbjct: 151 RTSLRKEIATLQTTFKEQRAKNENLKRAKLDLNLH-SSATNLIAYFDGAENAIASQ---- 205

Query: 173 EARPIGHTAISPPSDKS--RELTAAVCP---PSLPSTSCEPEKKNATVQERNSFLLPDLN 337
                 H   +PPS       L + V P   P     SC+ E K  +    NSF+LPDLN
Sbjct: 206 -----AHQRTAPPSFSHFPSHLLSHVTPYVHPYPQLDSCD-EHKAVSSSGNNSFVLPDLN 259

Query: 338 LPVEVDSDSETLYGMS 385
           +    DS SE LYGMS
Sbjct: 260 MVPSEDSGSEILYGMS 275


Top