BLASTX nr result
ID: Cocculus23_contig00023875
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00023875
(2123 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc... 137 2e-29
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc... 136 4e-29
ref|XP_007038204.1| Transducin/WD40 repeat-like superfamily prot... 135 7e-29
ref|XP_007028624.1| Uncharacterized protein TCM_024518 [Theobrom... 135 1e-28
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc... 135 1e-28
gb|AAK29467.1| polyprotein-like [Solanum chilense] 131 1e-27
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 130 2e-27
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 127 2e-26
ref|XP_007016583.1| Uncharacterized protein TCM_041944 [Theobrom... 127 3e-26
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 127 3e-26
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 125 1e-25
emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera] 122 5e-25
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz... 122 7e-25
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 119 6e-24
emb|CAE04897.3| OSJNBa0042I15.19 [Oryza sativa Japonica Group] 117 2e-23
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera] 115 6e-23
emb|CAN74741.1| hypothetical protein VITISV_025583 [Vitis vinifera] 115 8e-23
ref|XP_003625577.1| Ubiquitin-protein ligase [Medicago truncatul... 114 1e-22
ref|XP_003613324.1| Cc-nbs-lrr resistance protein [Medicago trun... 114 2e-22
gb|ABA94368.2| retrotransposon protein, putative, Ty1-copia subc... 111 2e-21
>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 424
Score = 137 bits (346), Expect = 2e-29
Identities = 84/241 (34%), Positives = 125/241 (51%), Gaps = 7/241 (2%)
Frame = -3
Query: 1371 VTTMVTNSAEVIFTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEM 1192
+ T V + EV+ KFDG NF LW++ + DLL Q G+ AL P K+D +WE
Sbjct: 1 MATTVVSKFEVV----KFDGTG-NFVLWQMRLKDLLAQQGISKALEETMPEKMDAGKWEE 55
Query: 1191 MNMRATSAIRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKE 1012
M +A + IRL +S S +Y VM E ++ ++W KL ++YMSKSL ++ LK +L+ + +E
Sbjct: 56 MKAQAAATIRLSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQMQE 115
Query: 1011 GVSLRDHFNEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEE 832
LR H + FN++++DLS + V++ +EDKAI LL S+ + + T GKDTI E
Sbjct: 116 ESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKDTIKTEI 175
Query: 831 VKCALIDD-------DDAEVGQANKFXXXXXXXXXXXXGVSRNSKALAERECYHCRMKGH 673
+ L D + E QA S+ A CY C GH
Sbjct: 176 ISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGA----RCYKCHEFGH 231
Query: 672 L 670
+
Sbjct: 232 I 232
>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 415
Score = 136 bits (342), Expect = 4e-29
Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 5/227 (2%)
Frame = -3
Query: 1335 FTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEMMNMRATSAIRLC 1156
F KFDG NF LW++ + DLL Q G+ AL P KID +W M +A + IRL
Sbjct: 9 FEVVKFDGTG-NFVLWQMRLKDLLAQQGISKALQETMPEKIDADKWNEMKAQAAATIRLS 67
Query: 1155 MSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFN 976
+S S +Y VM E S ++W KL +++MSKSL ++ LK +L+ + +E LR H + FN
Sbjct: 68 LSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDVFN 127
Query: 975 RILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCALIDDD--- 805
++++DLS + V++ +EDKAI LL S+ + + T T GKDT+ EE+ +L+ D
Sbjct: 128 QLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKDTVKTEEIISSLLARDLRR 187
Query: 804 --DAEVGQANKFXXXXXXXXXXXXGVSRNSKALAERECYHCRMKGHL 670
E +A++ SK R CY C GH+
Sbjct: 188 SKKNEATKASQGKSLLVKDKHDHEAGVSKSKEKGAR-CYKCHEFGHI 233
>ref|XP_007038204.1| Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
gi|508775449|gb|EOY22705.1| Transducin/WD40 repeat-like
superfamily protein [Theobroma cacao]
Length = 1029
Score = 135 bits (340), Expect = 7e-29
Identities = 86/238 (36%), Positives = 134/238 (56%), Gaps = 8/238 (3%)
Frame = -3
Query: 1362 MVTNSAEVIFTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEK--PGKIDDSEWEMM 1189
M T+S + + +KF+G+ + FSLWR+ M LLVQ GL AL ++ P + D E + +
Sbjct: 123 MATSSTK--YEIEKFNGRND-FSLWRVKMRALLVQQGLLKALKGKEHLPSNLSDGEKDDL 179
Query: 1188 NMRATSAIRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEG 1009
+A S I L +S + +V E SAA +W KLE+IYM+KSL NR +K RL+ + EG
Sbjct: 180 MKKAHSVILLALSDEVLREVTDEESAAAVWFKLESIYMTKSLTNRLYMKQRLYTLKMSEG 239
Query: 1008 VSLRDHFNEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEV 829
S+ H +EFNR++LDL +I V+I +ED A+ LL + + +T G+DT+T E+V
Sbjct: 240 TSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLTFEDV 299
Query: 828 KCAL-IDDDDAEVG----QANKFXXXXXXXXXXXXGVSRNSKALAE-RECYHCRMKGH 673
+ +L + +VG + G+ R K+ A+ + C++C KGH
Sbjct: 300 RASLNFKELKKKVGGIRNENQAEGLVVNRGRGKEKGLDRKGKSRAKGKTCWNCGQKGH 357
>ref|XP_007028624.1| Uncharacterized protein TCM_024518 [Theobroma cacao]
gi|508717229|gb|EOY09126.1| Uncharacterized protein
TCM_024518 [Theobroma cacao]
Length = 277
Score = 135 bits (339), Expect = 1e-28
Identities = 88/239 (36%), Positives = 132/239 (55%), Gaps = 9/239 (3%)
Frame = -3
Query: 1362 MVTNSAEVIFTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEK--PGKIDDSEWEMM 1189
M T+S + + +KF+G+ + FSLWR+ M LLVQ GL AL ++ P + DSE + +
Sbjct: 1 MATSSTK--YEIEKFNGRND-FSLWRVKMCALLVQQGLLKALKGKEHLPSNLSDSEKDDL 57
Query: 1188 NMRATSAIRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEG 1009
+A SAI L +S + +V E SAA MW KLE+IY++KSL NR +K RL+ + EG
Sbjct: 58 MEKAHSAILLTLSDEVLREVTDEESAAAMWFKLESIYITKSLTNRLYMKQRLYTLKMSEG 117
Query: 1008 VSLRDHFNEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEV 829
S+ H +EFNR++LDL +I V+I +ED A+ LL + + +T G+DT+T E+V
Sbjct: 118 TSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLTFEDV 177
Query: 828 KCALIDDD-DAEVG------QANKFXXXXXXXXXXXXGVSRNSKALAERECYHCRMKGH 673
+ L + +VG QA S+A + C++C KGH
Sbjct: 178 RAYLNSKELKKKVGGIRNENQAEGLVVNRGRGKEKGLDKKGKSRAKG-KTCWNCGQKGH 235
>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 425
Score = 135 bits (339), Expect = 1e-28
Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 8/242 (3%)
Frame = -3
Query: 1371 VTTMVTNSAEVIFTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEM 1192
+ MV + EV+ KFDG NF LW++ + DLL Q G+ AL P K+D +WE
Sbjct: 1 MAAMVVSKFEVV----KFDGTG-NFILWQMRLKDLLAQQGISKALEETMPEKMDAGKWEE 55
Query: 1191 MNMRATSAIRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKE 1012
M +A + IRL +S S +Y VM E + ++W KL ++YMSKSL ++ LK +L+ + +E
Sbjct: 56 MKAQAAATIRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQE 115
Query: 1011 GVSLRDHFNEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEE 832
LR H + FN++++DLS + V++ +ED AI LL S+ + + T GKDT+ EE
Sbjct: 116 ESDLRKHVDVFNQLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKDTVKTEE 175
Query: 831 VKCALI--------DDDDAEVGQANKFXXXXXXXXXXXXGVSRNSKALAERECYHCRMKG 676
+L+ ++ E QA S++ A CY C G
Sbjct: 176 KISSLLARDLRRSNKNEAMEASQAESLLVKAKHDHEAGVSKSKDKGA----RCYKCHEFG 231
Query: 675 HL 670
H+
Sbjct: 232 HI 233
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 131 bits (329), Expect = 1e-27
Identities = 72/178 (40%), Positives = 108/178 (60%), Gaps = 2/178 (1%)
Frame = -3
Query: 1341 VIFTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALN--VEKPGKIDDSEWEMMNMRATSA 1168
V + KF+G K FS+W+ M DLL+Q GL AL +KP + +WE ++ +A SA
Sbjct: 4 VKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAASA 63
Query: 1167 IRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHF 988
IRL ++ V +++ E SA +W KLEN+YMSK+L N+ LK +L+ EG + H
Sbjct: 64 IRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHL 123
Query: 987 NEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCALI 814
N N ++ L+++GV+I EEDK I LL S+ S+ L T GKD+I +++V AL+
Sbjct: 124 NVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALL 181
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 130 bits (328), Expect = 2e-27
Identities = 69/170 (40%), Positives = 108/170 (63%)
Frame = -3
Query: 1326 DKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEMMNMRATSAIRLCMSG 1147
DKF G+ +FSLW++ M LL Q G L+ +K + E ++ +A S I LC++
Sbjct: 9 DKFTGRN-SFSLWQIKMRALLKQQGFWAPLSKDKNAVVTP-EMAILEEKAHSTIMLCLAD 66
Query: 1146 SAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFNRIL 967
+ +V E +AA +W KLE++YM+KSL N+ +LK RLF R EG LR+H + N +L
Sbjct: 67 DVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLEQLNTLL 126
Query: 966 LDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCAL 817
L+L +I V+I +ED A+ LL+S+ + ++F +GKDT+++EEV+ AL
Sbjct: 127 LELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSAL 176
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 127 bits (320), Expect = 2e-26
Identities = 83/238 (34%), Positives = 124/238 (52%), Gaps = 15/238 (6%)
Frame = -3
Query: 1341 VIFTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVE--KPGKIDDSEWEMMNMRATSA 1168
V + KF+G FS W+ M DLL+Q GL L+V+ KP + +W ++ RA SA
Sbjct: 4 VKYEVAKFNGDN-GFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 1167 IRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHF 988
IRL +S V +++ E +A +W +LE++YMSK+L N+ LK +L+ EG + H
Sbjct: 63 IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122
Query: 987 NEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCALIDD 808
N FN ++ L+++GV+I EEDKAI LL S+ S+ L T GK TI +++V AL+ +
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLN 182
Query: 807 D-----DAEVGQA--------NKFXXXXXXXXXXXXGVSRNSKALAERECYHCRMKGH 673
+ GQA + G S+N R CY+C GH
Sbjct: 183 EKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGH 240
>ref|XP_007016583.1| Uncharacterized protein TCM_041944 [Theobroma cacao]
gi|508786946|gb|EOY34202.1| Uncharacterized protein
TCM_041944 [Theobroma cacao]
Length = 698
Score = 127 bits (318), Expect = 3e-26
Identities = 73/184 (39%), Positives = 113/184 (61%), Gaps = 2/184 (1%)
Frame = -3
Query: 1362 MVTNSAEVIFTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKP--GKIDDSEWEMM 1189
MVT+S + + +KF+G+ + FSLW + M LLVQ GL AL ++ + + E + +
Sbjct: 1 MVTSSTK--YEIEKFNGRND-FSLWCVKMCALLVQQGLLKALKEKEHLLSNLSNGEKDNL 57
Query: 1188 NMRATSAIRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEG 1009
+A SAI L +S + +V E SA +W KL++IYM+KSL NR +K RL+ + EG
Sbjct: 58 MEKAHSAILLALSDEVIREVTDEESAIAVWLKLKSIYMTKSLMNRLYIKQRLYTLKMSEG 117
Query: 1008 VSLRDHFNEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEV 829
S+ H +EFNR++LDL +I V+I +ED A+ LL S+ + +T G+DT T E+V
Sbjct: 118 TSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCSLPPSYENFMDTMLYGRDTFTFEDV 177
Query: 828 KCAL 817
+ +L
Sbjct: 178 RASL 181
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 127 bits (318), Expect = 3e-26
Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 10/231 (4%)
Frame = -3
Query: 1335 FTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEK--PGKIDDSEWEMMNMRATSAIR 1162
F +KF GK + F L RL M LLVQ GL+DAL EK P + + + + +A SAI
Sbjct: 6 FDVEKFTGKND-FGLXRLKMRALLVQQGLQDALLGEKNLPSTMQEKQKIELLEKAHSAII 64
Query: 1161 LCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNE 982
L + + + + K SAA++W KLE++YM+KSL NR K++L+ F+ G+S+ H +
Sbjct: 65 LSLGDTVLREXAKAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIEXHLDH 124
Query: 981 FNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCAL----- 817
FN+I+LDL +I + I +EDKAI LL S+ ++ + + G+D++T +EV+ L
Sbjct: 125 FNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSILHAREL 184
Query: 816 --IDDDDAEVGQANKFXXXXXXXXXXXXGVSRNSKALAER-ECYHCRMKGH 673
++ E G+ SK+ ++ +C+ C +GH
Sbjct: 185 QKQEESKEESGEGLNIRGRSEKREKKGKNSKSRSKSKTKKFKCFICHKEGH 235
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 125 bits (313), Expect = 1e-25
Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 11/232 (4%)
Frame = -3
Query: 1335 FTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEK--PGKIDDSEWEMMNMRATSAIR 1162
F +KF+G + F+LW+L M LLVQ A+ E+ P + E E + RA SAI
Sbjct: 6 FEVEKFNGSND-FTLWKLKMKALLVQQKCAQAIEGEETLPVGLTAVEKEEVVSRAHSAIL 64
Query: 1161 LCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNE 982
L ++ + +V E++A +W+K E+ Y KSL NR K +L + EG+ +RDH N
Sbjct: 65 LSLADEVLREVADETTAVGLWRKFESKYQKKSLTNRLYQKRQLHTLKMSEGMQVRDHLNN 124
Query: 981 FNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCALIDDD- 805
FNRI+LDL+ +GV++ EED+A+ LL S+ S+ +T G+++I+ +VK AL +
Sbjct: 125 FNRIILDLNGVGVKVEEEDQAMILLCSLPSSYENFVDTMMYGRBSISXNDVKDALQSKEL 184
Query: 804 DAEVGQANKFXXXXXXXXXXXXGVSRN--------SKALAERECYHCRMKGH 673
V + + + RN SK+ A C+H + KGH
Sbjct: 185 QKLVSGSEEGSVETGLTVSRGRSMERNGGGRSKSXSKSKAAMRCFHXKEKGH 236
>emb|CAN84102.1| hypothetical protein VITISV_041248 [Vitis vinifera]
Length = 894
Score = 122 bits (307), Expect = 5e-25
Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 11/234 (4%)
Frame = -3
Query: 1341 VIFTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEK--PGKIDDSEWEMMNMRATSA 1168
V F +KF GK + F LWRL M LLVQ GL+DAL EK P + + + +A A
Sbjct: 4 VKFDVEKFTGKND-FGLWRLKMRALLVQQGLQDALLGEKNLPXTMQEKHKIELLEKAHGA 62
Query: 1167 IRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHF 988
I L + + + +V K SAAK+ KLE++YM+KSL NR ++L+ F+ +S+ +H
Sbjct: 63 IILSLGDTXLREVAKAKSAAKLLLKLESLYMTKSLANRLHKXIKLYTFKMTPSMSIEEHL 122
Query: 987 NEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCAL--- 817
+ FN+I+LDL +I + + EDKAI LL S+ ++ + E G+D +T +EV+ L
Sbjct: 123 DHFNKIILDLKNIDIAVSNEDKAILLLTSLDASYTNMKEAIMYGRDILTFDEVQSILHAR 182
Query: 816 ----IDDDDAEVGQANKFXXXXXXXXXXXXGVSRN-SKALAER-ECYHCRMKGH 673
++ E+G+ S++ SK+ ++ +C+ C +GH
Sbjct: 183 ELHKQEESKEELGEGLNIRGKSKKREKKKGNNSKSRSKSKTKKFKCFICHKEGH 236
>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
Group] gi|108706491|gb|ABF94286.1| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 556
Score = 122 bits (306), Expect = 7e-25
Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 8/214 (3%)
Frame = -3
Query: 1287 RLHMHDLLVQLGLKDALNVEKPGKIDDSEWEMMNMRATSAIRLCMSGSAVYDVMKESSAA 1108
++ + DLL Q G+ AL P K+D +W M +AT+ IRL +S +Y VM E +
Sbjct: 155 QMRLKDLLAQQGISKALEETMPEKMDVGKWVEMKAQATAIIRLSLSDFVMYQVMDEKTPK 214
Query: 1107 KMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFNRILLDLSSIGVEIGEE 928
++W KL ++YMSKSL ++ LK +L+ + +E LR H + FN++++DLS + V++ +E
Sbjct: 215 EIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSKLDVKLDDE 274
Query: 927 DKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCALI--------DDDDAEVGQANKFX 772
DKAI LL S+ + + T T GKDT+ EE+ +L+ ++ E QA
Sbjct: 275 DKAIILLCSLPPSFEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEAMEASQAESLL 334
Query: 771 XXXXXXXXXXXGVSRNSKALAERECYHCRMKGHL 670
S+ A CY C GH+
Sbjct: 335 VKAKHDHEAGVSKSKEKGA----RCYKCHEFGHI 364
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 119 bits (298), Expect = 6e-24
Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 20/232 (8%)
Frame = -3
Query: 1302 NFSLWRLHMHDLLVQLGLKDALNVEK-----PGKIDDSEWEMMNMRATSAIRLCMSGSAV 1138
+FSLW+L M LLV GL+ AL+ E IDD ++ N RA S + L + S +
Sbjct: 16 DFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQN-RAHSTLILSLGDSIL 74
Query: 1137 YDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFNRILLDL 958
++ +E +A +W K+E + M KSL +R LK RL+ F +EGV+++DH + FN+I+LDL
Sbjct: 75 REISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHIDTFNKIILDL 134
Query: 957 SSI-GVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCALIDDD---DAEVG 790
+ V+I +EDKA LL S+ + +T G+ T+T+E+VK +L + + E+
Sbjct: 135 EGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSSKEIQKNCELE 194
Query: 789 QAN-----------KFXXXXXXXXXXXXGVSRNSKALAERECYHCRMKGHLI 667
+N K K +R+C++CR +GH I
Sbjct: 195 TSNGEGLMARTEKKKDQKNKNQGKGHGKNQETADKKKKKRKCFYCRKEGHYI 246
>emb|CAE04897.3| OSJNBa0042I15.19 [Oryza sativa Japonica Group]
Length = 478
Score = 117 bits (294), Expect = 2e-23
Identities = 65/155 (41%), Positives = 94/155 (60%)
Frame = -3
Query: 1335 FTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEMMNMRATSAIRLC 1156
F KFDG NF LW+ + DLL Q + AL KP K++D + E M ++A + IR C
Sbjct: 90 FDLVKFDGFG-NFGLWQTRVKDLLAQQEVSKALKGVKPAKMEDDDCEEMQLQAAATIRRC 148
Query: 1155 MSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFN 976
+S +Y VM+E+S +W+KLE +MSK+L N+ LK +L+ + +EG L H N FN
Sbjct: 149 LSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGADLTAHVNVFN 208
Query: 975 RILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYE 871
+++ DL + VE+ +EDKAI LL S+ P YE
Sbjct: 209 QLVTDLVKMDVEVDDEDKAIVLLCSL----PESYE 239
>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
Length = 939
Score = 115 bits (289), Expect = 6e-23
Identities = 63/172 (36%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Frame = -3
Query: 1326 DKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEK--PGKIDDSEWEMMNMRATSAIRLCM 1153
++F GK + F++WR+ M +L Q G+KDAL E P + E ++ +A I L +
Sbjct: 9 ERFIGKND-FNVWRMRMKAILFQQGVKDALKDESELPVTMTAKEKSDIDEKAYHLIILAL 67
Query: 1152 SGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFNR 973
A+ + +E++A +W KLE +YM SL NR LK RL+ F+ +E S+ D+ ++F +
Sbjct: 68 GDKALREFSEETTAKGVWNKLEQLYMQNSLSNRLYLKERLYGFKMQEDRSIADNLDDFAK 127
Query: 972 ILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCAL 817
I+L++S+IG+++ +EDKA+ +L S+ ET G+ T+T+EEV+ AL
Sbjct: 128 IVLEMSNIGIKVDDEDKAVLVLKSLPGLYSNFKETMKYGRKTLTLEEVQSAL 179
>emb|CAN74741.1| hypothetical protein VITISV_025583 [Vitis vinifera]
Length = 253
Score = 115 bits (288), Expect = 8e-23
Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Frame = -3
Query: 1329 TDKFDGK----KENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEMMNM--RATSA 1168
T KFD + K +F LWRL M LVQ GL+DAL EK E + + +A SA
Sbjct: 3 TAKFDVEEFTSKNDFRLWRLKMRAFLVQQGLQDALLREKNLLSTMQEKHKIELLEKAHSA 62
Query: 1167 IRLCMSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHF 988
I L + + + +V K SAA++W KLE++YM+KSL NR K++L+ F+ G+S+ +H
Sbjct: 63 IVLSLGDTLLREVAKAKSAAELWLKLESLYMTKSLGNRLHKKIKLYTFKMIPGMSIEEHL 122
Query: 987 NEFNRILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCAL 817
+ FN+I+LDL +I + + +EDKAI L S+ ++ + E +D +T +EV+ L
Sbjct: 123 DHFNKIILDLENIDIVVLDEDKAIMLPTSLDASYTNMKEAIMYERDNMTFDEVQSIL 179
>ref|XP_003625577.1| Ubiquitin-protein ligase [Medicago truncatula]
gi|355500592|gb|AES81795.1| Ubiquitin-protein ligase
[Medicago truncatula]
Length = 1405
Score = 114 bits (286), Expect = 1e-22
Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Frame = -3
Query: 1326 DKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEMMNM--RATSAIRLCM 1153
+KF G + F LW++ M +L+Q + AL E + S+ E M +A SA+ LC+
Sbjct: 8 EKFTGDND-FGLWKVKMEAVLIQQKCEKALKGEGSLPVTMSQAEKTEMVDKARSAVVLCL 66
Query: 1152 SGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFNR 973
+ +V KE++AA +W KLE++YM+KSL +R LK +L++FR E ++ + EFN+
Sbjct: 67 GDKVLREVAKEATAASIWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKAIMEQLTEFNK 126
Query: 972 ILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKD-TITVEEVKCALIDDD--- 805
IL DL +I V++ +EDKAI LL ++ + +T GK+ T+T+EEV+ AL +
Sbjct: 127 ILDDLENIEVQLEDEDKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAALRTKELTK 186
Query: 804 DAEVGQANKFXXXXXXXXXXXXGVSRNSKALAERECYHCRMKGH 673
++ + G R S + EC++C GH
Sbjct: 187 SKDLTHEHGEGLSVTRGNGGGRGNRRKSGNKSRFECFNCHKMGH 230
>ref|XP_003613324.1| Cc-nbs-lrr resistance protein [Medicago truncatula]
gi|355514659|gb|AES96282.1| Cc-nbs-lrr resistance protein
[Medicago truncatula]
Length = 1104
Score = 114 bits (285), Expect = 2e-22
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 3/173 (1%)
Frame = -3
Query: 1326 DKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEMMNM--RATSAIRLCM 1153
+KF G + F LW++ M +L+Q + AL E + S+ E M +A SA+ LC+
Sbjct: 8 EKFTGDND-FGLWKVKMEAVLIQQKCEKALKGEGSLPVTMSQAEKTEMVDKARSAVVLCL 66
Query: 1152 SGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFNR 973
+ +V KE++AA +W KLE++YM+KSL +R LK +L++FR E ++ + EFN+
Sbjct: 67 GDKVLREVAKEATAASIWAKLESLYMTKSLAHRQFLKQQLYSFRMVESKAIMEQLTEFNK 126
Query: 972 ILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKD-TITVEEVKCAL 817
IL DL +I V++ +EDKAI LL ++ + +T GK+ T+T+EEV+ AL
Sbjct: 127 ILDDLENIEVQLEDEDKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAAL 179
>gb|ABA94368.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 375
Score = 111 bits (277), Expect = 2e-21
Identities = 67/177 (37%), Positives = 100/177 (56%)
Frame = -3
Query: 1335 FTTDKFDGKKENFSLWRLHMHDLLVQLGLKDALNVEKPGKIDDSEWEMMNMRATSAIRLC 1156
F KFDG + NF L ++ + DLL Q G+ AL P K+DD +W+ M +A + IRL
Sbjct: 9 FEVVKFDGTR-NFVLSQMRLKDLLAQQGISKALEETMPEKMDDDKWDEMKAQAAATIRLR 67
Query: 1155 MSGSAVYDVMKESSAAKMWKKLENIYMSKSLHNRFVLKLRLFNFRRKEGVSLRDHFNEFN 976
+S +Y VM E S ++W KL ++YMSKSL KE +LR H + FN
Sbjct: 68 LSDFVMYQVMDEKSPKEIWDKLASLYMSKSL--------------TKES-NLRKHVDVFN 112
Query: 975 RILLDLSSIGVEIGEEDKAIHLLISVRSTNPRLYETFTIGKDTITVEEVKCALIDDD 805
+ ++DLS + V++ ++DKAI LL S+ + + T T GK T+ EE+ +L+ D
Sbjct: 113 QWVVDLSKLDVKLDDKDKAIILLCSLPPSYEHVVTTLTHGKGTVKTEEIISSLLARD 169