BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00023776
         (210 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK46555.1| unknown [Lotus japonicus]                              141   1e-31
gb|AFW72341.1| hypothetical protein ZEAMMB73_270623 [Zea mays]        140   2e-31
ref|XP_002461285.1| hypothetical protein SORBIDRAFT_02g000210 [S...   140   2e-31
ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea ma...   140   2e-31
ref|XP_004955770.1| PREDICTED: DNA-directed RNA polymerase II su...   139   3e-31
ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerases II, ...   139   3e-31
ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycin...   139   3e-31
ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [S...   139   3e-31
ref|XP_006650782.1| PREDICTED: DNA-directed RNA polymerases II, ...   139   4e-31
ref|XP_007131395.1| hypothetical protein PHAVU_011G010100g [Phas...   139   4e-31
ref|XP_006857607.1| hypothetical protein AMTR_s00061p00108850 [A...   139   5e-31
ref|XP_004489205.1| PREDICTED: DNA-directed RNA polymerase II su...   139   5e-31
ref|NP_001058998.1| Os07g0172500 [Oryza sativa Japonica Group] g...   138   7e-31
gb|ACJ83854.1| unknown [Medicago truncatula] gi|388519401|gb|AFK...   138   7e-31
gb|EXB74395.1| hypothetical protein L484_004214 [Morus notabilis]     138   9e-31
ref|XP_004289695.1| PREDICTED: DNA-directed RNA polymerase II su...   138   9e-31
ref|XP_004289694.1| PREDICTED: DNA-directed RNA polymerase II su...   138   9e-31
ref|XP_007201425.1| hypothetical protein PRUPE_ppa013559mg [Prun...   138   9e-31
gb|AFW72350.1| hypothetical protein ZEAMMB73_315029 [Zea mays]        137   2e-30
ref|XP_003578343.1| PREDICTED: DNA-directed RNA polymerase II su...   137   2e-30

>gb|AFK46555.1| unknown [Lotus japonicus]
          Length = 116

 Score =  141 bits (355), Expect = 1e-31
 Identities = 68/69 (98%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>gb|AFW72341.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
          Length = 112

 Score =  140 bits (352), Expect = 2e-31
 Identities = 65/69 (94%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKI+NAASFT+EREDHT+GNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_002461285.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
           gi|241924662|gb|EER97806.1| hypothetical protein
           SORBIDRAFT_02g000210 [Sorghum bicolor]
          Length = 120

 Score =  140 bits (352), Expect = 2e-31
 Identities = 65/69 (94%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKI+NAASFT+EREDHT+GNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea mays]
           gi|194696560|gb|ACF82364.1| unknown [Zea mays]
           gi|194699868|gb|ACF84018.1| unknown [Zea mays]
           gi|194706942|gb|ACF87555.1| unknown [Zea mays]
           gi|195615212|gb|ACG29436.1| DNA-directed RNA polymerase
           II subunit J [Zea mays] gi|195628620|gb|ACG36140.1|
           DNA-directed RNA polymerase II subunit J [Zea mays]
           gi|195656859|gb|ACG47897.1| DNA-directed RNA polymerase
           II subunit J [Zea mays] gi|413937791|gb|AFW72342.1|
           DNA-directed RNA polymerase II subunit J isoform 1 [Zea
           mays] gi|413937792|gb|AFW72343.1| DNA-directed RNA
           polymerase II subunit J isoform 2 [Zea mays]
           gi|413937793|gb|AFW72344.1| DNA-directed RNA polymerase
           II subunit J isoform 3 [Zea mays]
           gi|413937794|gb|AFW72345.1| DNA-directed RNA polymerase
           II subunit J isoform 4 [Zea mays]
           gi|413937795|gb|AFW72346.1| DNA-directed RNA polymerase
           II subunit J isoform 5 [Zea mays]
          Length = 120

 Score =  140 bits (352), Expect = 2e-31
 Identities = 65/69 (94%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKI+NAASFT+EREDHT+GNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_004955770.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           [Setaria italica] gi|514825448|ref|XP_004987377.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB11-like [Setaria italica]
          Length = 120

 Score =  139 bits (351), Expect = 3e-31
 Identities = 66/69 (95%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKI+NAASFTIEREDHTIGNI+RMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIVNAASFTIEREDHTIGNIVRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11
           [Glycine max]
          Length = 116

 Score =  139 bits (351), Expect = 3e-31
 Identities = 67/69 (97%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIERE+HTIGNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycine max]
           gi|255626235|gb|ACU13462.1| unknown [Glycine max]
          Length = 116

 Score =  139 bits (351), Expect = 3e-31
 Identities = 67/69 (97%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIERE+HTIGNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
           gi|241938640|gb|EES11785.1| hypothetical protein
           SORBIDRAFT_06g001360 [Sorghum bicolor]
          Length = 117

 Score =  139 bits (351), Expect = 3e-31
 Identities = 66/69 (95%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKI+NAASFTIEREDHTIGNI+RMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIVNAASFTIEREDHTIGNIVRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_006650782.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           11-like [Oryza brachyantha]
           gi|573950396|ref|XP_006657491.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 11-like [Oryza
           brachyantha]
          Length = 120

 Score =  139 bits (350), Expect = 4e-31
 Identities = 66/69 (95%), Positives = 68/69 (98%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKI+NA SFTIEREDHTIGNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_007131395.1| hypothetical protein PHAVU_011G010100g [Phaseolus vulgaris]
           gi|561004395|gb|ESW03389.1| hypothetical protein
           PHAVU_011G010100g [Phaseolus vulgaris]
          Length = 116

 Score =  139 bits (350), Expect = 4e-31
 Identities = 66/69 (95%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIERE+HTIGNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKII+R
Sbjct: 66  PLQYKIIIR 74


>ref|XP_006857607.1| hypothetical protein AMTR_s00061p00108850 [Amborella trichopoda]
           gi|548861703|gb|ERN19074.1| hypothetical protein
           AMTR_s00061p00108850 [Amborella trichopoda]
          Length = 122

 Score =  139 bits (349), Expect = 5e-31
 Identities = 65/69 (94%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIERE+HT+GN+LRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTVGNVLRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_004489205.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Cicer
           arietinum] gi|502152948|ref|XP_004509165.1| PREDICTED:
           DNA-directed RNA polymerase II subunit RPB11-like
           isoform X1 [Cicer arietinum]
           gi|502152950|ref|XP_004509166.1| PREDICTED: DNA-directed
           RNA polymerase II subunit RPB11-like isoform X2 [Cicer
           arietinum]
          Length = 116

 Score =  139 bits (349), Expect = 5e-31
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTI NILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIANILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|NP_001058998.1| Os07g0172500 [Oryza sativa Japonica Group]
           gi|34394446|dbj|BAC83620.1| putative DNA-directed RNA
           polymerase II 13.6K chain [Oryza sativa Japonica Group]
           gi|113610534|dbj|BAF20912.1| Os07g0172500 [Oryza sativa
           Japonica Group] gi|215704597|dbj|BAG94225.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 120

 Score =  138 bits (348), Expect = 7e-31
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKI+NA SFTIEREDHTIGNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKI+VR
Sbjct: 66  PLQYKILVR 74


>gb|ACJ83854.1| unknown [Medicago truncatula] gi|388519401|gb|AFK47762.1| unknown
           [Medicago truncatula]
          Length = 116

 Score =  138 bits (348), Expect = 7e-31
 Identities = 65/69 (94%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKV+YERDTKIINAASFTIEREDHTIGNILRMQLH+DP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVAYERDTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKII+R
Sbjct: 66  PLQYKIIIR 74


>gb|EXB74395.1| hypothetical protein L484_004214 [Morus notabilis]
          Length = 107

 Score =  138 bits (347), Expect = 9e-31
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRD +VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDENVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_004289695.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           isoform 2 [Fragaria vesca subsp. vesca]
          Length = 118

 Score =  138 bits (347), Expect = 9e-31
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRD +VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDENVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_004289694.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           isoform 1 [Fragaria vesca subsp. vesca]
          Length = 134

 Score =  138 bits (347), Expect = 9e-31
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRD +VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDENVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_007201425.1| hypothetical protein PRUPE_ppa013559mg [Prunus persica]
           gi|462396825|gb|EMJ02624.1| hypothetical protein
           PRUPE_ppa013559mg [Prunus persica]
          Length = 116

 Score =  138 bits (347), Expect = 9e-31
 Identities = 67/69 (97%), Positives = 68/69 (98%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRD +VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDENVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>gb|AFW72350.1| hypothetical protein ZEAMMB73_315029 [Zea mays]
          Length = 75

 Score =  137 bits (345), Expect = 2e-30
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVSYERDTKI+NAASFT+ER DHT+GNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSYERDTKIVNAASFTVERVDHTVGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74


>ref|XP_003578343.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
           isoform 1 [Brachypodium distachyon]
           gi|357159117|ref|XP_003578344.1| PREDICTED: DNA-directed
           RNA polymerase II subunit RPB11-like isoform 2
           [Brachypodium distachyon]
          Length = 119

 Score =  137 bits (345), Expect = 2e-30
 Identities = 65/69 (94%), Positives = 69/69 (100%)
 Frame = -3

Query: 208 RYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPHVLFAGYKLPH 29
           RYERFVVPEGTKKVS+E+DTKI+NAASFTIEREDHTIGNILRMQLHRDP+VLFAGYKLPH
Sbjct: 6   RYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPH 65

Query: 28  PLQYKIIVR 2
           PLQYKIIVR
Sbjct: 66  PLQYKIIVR 74