BLASTX nr result
ID: Cocculus23_contig00023532
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00023532
(642 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 117 4e-24
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 117 4e-24
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 114 3e-23
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 114 3e-23
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 112 1e-22
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 110 4e-22
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 108 1e-21
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 107 3e-21
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 104 2e-20
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 102 1e-19
ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308... 102 1e-19
gb|ABE65398.1| hypothetical protein At1g43570 [Arabidopsis thali... 101 2e-19
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 101 2e-19
gb|ABK28140.1| unknown [Arabidopsis thaliana] 101 2e-19
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 100 3e-19
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 100 3e-19
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 97 4e-18
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 96 7e-18
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 96 9e-18
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 95 2e-17
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 117 bits (292), Expect = 4e-24
Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 5/204 (2%)
Frame = +1
Query: 46 ITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPH-S 222
+ +PKAEGGL +R K+ N L+L+W+I N SLW K + E +++ SIW++ S
Sbjct: 512 VCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTS 571
Query: 223 DSPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRY 402
W WRKILKIR++A +F + +GNG FW ++W G L + + + R
Sbjct: 572 MGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPRE 631
Query: 403 NKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNE-EDMVVW---NPVDSGIFSIK 570
VA+ + T+LL E QRI ++ ED V+W N V FS +
Sbjct: 632 ASVADAWTRRS---RRRHRTSLLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTR 688
Query: 571 TAWDKVRISYPTCPWWSMVWFPQA 642
W ++ + T W VWF A
Sbjct: 689 DTWHLIKATSSTVSWHKGVWFRHA 712
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 117 bits (292), Expect = 4e-24
Identities = 71/207 (34%), Positives = 101/207 (48%), Gaps = 8/207 (3%)
Frame = +1
Query: 46 ITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHSD 225
+ +PK EGGL +R K+ N L+L+W+I + +SLW+K I S LK+ S W V ++
Sbjct: 114 VCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAVRENTS 173
Query: 226 -SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRY 402
W WRKILK R++A T K I NG T FW ++W +G +LI + G+
Sbjct: 174 LGSWMWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDLG---RLIDSAGDRGAIDLGI 230
Query: 403 NKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNE----EDMVVWNPVDS---GIF 561
NK A ++ G TN L E + WN ED +W ++ IF
Sbjct: 231 NKHATVVEAWGNRRRRRHRTNFLNRVEERLILS---WNSRNQAEDRALWKGKENRFRSIF 287
Query: 562 SIKTAWDKVRISYPTCPWWSMVWFPQA 642
S K W+ +R W+ VWF QA
Sbjct: 288 STKDTWNHIRTVSNKVAWYKGVWFAQA 314
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 114 bits (285), Expect = 3e-23
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 4/204 (1%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHS 222
++ +PK+EGGL +R K+ N L+L+W+I + +SLW+K + + LKR+ W V ++
Sbjct: 417 QVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENA 476
Query: 223 D-SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
+ W W+KILK R +A F K+ +GNG T FW ++W +G L + + + R
Sbjct: 477 NLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRLIDVAGIRGTIDMGISR 536
Query: 400 YNKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNEEDMVVW---NPVDSGIFSIK 570
VA+ N ++ + + +R ++ V+W N + FS K
Sbjct: 537 TMSVADAWTSRRRRHHRQEILNTIEEVLSTQHQKRTQQQQQGRVLWKGKNDIYKDKFSTK 596
Query: 571 TAWDKVRISYPTCPWWSMVWFPQA 642
W+ +R + W VWFP A
Sbjct: 597 NTWNYLRTTSNEVAWHKGVWFPHA 620
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 114 bits (284), Expect = 3e-23
Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 8/207 (3%)
Frame = +1
Query: 46 ITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHSD 225
+ +PK EGGL +R K+ N L+L+W+I + +SLW+K I S LK+ W V ++
Sbjct: 195 VCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVRENTS 254
Query: 226 -SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRY 402
W WRKILK R++A T K I NG +T FW ++W +G +LI + G+
Sbjct: 255 LGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDLG---RLIESAGDRGAIDLGI 311
Query: 403 NKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNE----EDMVVWNPVDS---GIF 561
NK A ++ G N L E + WN ED +W ++ IF
Sbjct: 312 NKHATVVEAWGNRRRRRHRANFLNRVEERLVLS---WNSRNQAEDCALWKGKENRFRSIF 368
Query: 562 SIKTAWDKVRISYPTCPWWSMVWFPQA 642
S K W+ +R W+ VWF QA
Sbjct: 369 STKDTWNHIRTVSNKVAWYKGVWFAQA 395
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 112 bits (279), Expect = 1e-22
Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 8/205 (3%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHS 222
+I +PK EGGL +R + N +L+L+W++ N +SLW+K + LK++S W++TP+S
Sbjct: 269 DICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNS 328
Query: 223 D-SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
W W+K+LK R A F + + NG T FW +NW MG L + ++ + R
Sbjct: 329 SLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISR 388
Query: 400 YNKVAEILNQEGWS--FPTSGNTNLLQIFEAC--KTIQRIPWNEEDMVVW---NPVDSGI 558
VA E WS T L EA + Q ED +W V
Sbjct: 389 NKTVA-----EAWSNRRRRKHRTEQLNDIEAALNQKYQTRNLLREDATLWRGKGDVFKTS 443
Query: 559 FSIKTAWDKVRISYPTCPWWSMVWF 633
FS K W++VR W+ VWF
Sbjct: 444 FSTKDTWNQVRKKSNEVAWYKGVWF 468
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 110 bits (275), Expect = 4e-22
Identities = 66/208 (31%), Positives = 99/208 (47%), Gaps = 8/208 (3%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHS 222
EI +PK EGGL ++ ++ NK L+L+W++ ++SLW+K + LK++S W++ HS
Sbjct: 585 EICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHS 644
Query: 223 D-SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
W WR++LK R +A +F K + NG T FW +NW G L L + + R
Sbjct: 645 TLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISR 704
Query: 400 YNKVAEILNQEGWS--FPTSGNTNLLQIFE--ACKTIQRIPWNEEDMVVW---NPVDSGI 558
+ +A E WS +L FE + Q ED ++W V
Sbjct: 705 HMTLA-----EAWSRRRRKRHRVEILNEFEEILLQKYQHRNIELEDAILWRGKEDVFKAR 759
Query: 559 FSIKTAWDKVRISYPTCPWWSMVWFPQA 642
FS K W+ +R S W VWF A
Sbjct: 760 FSTKDTWNHIRTSSNQRAWHKGVWFAHA 787
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 108 bits (270), Expect = 1e-21
Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 4/203 (1%)
Frame = +1
Query: 46 ITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPH-S 222
+ +PK EGGL +R K+ N L+L+WKI + SLW+K + + L+ S W V S
Sbjct: 865 VCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVS 924
Query: 223 DSPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRY 402
W W+K+LK R +A T K +GNG +T FW +NW +G L + + + R
Sbjct: 925 QGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRR 984
Query: 403 NKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNEEDMVVW---NPVDSGIFSIKT 573
V E + N+++ +A K ED V+W + V FS +
Sbjct: 985 MTVEEAWTNRRQRRHRNDVYNVIE--DALKKSWDTRTETEDKVLWRGKSDVFRTTFSTRD 1042
Query: 574 AWDKVRISYPTCPWWSMVWFPQA 642
W R + PW ++WF A
Sbjct: 1043 TWHHTRSTSARVPWHKVIWFSHA 1065
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 107 bits (267), Expect = 3e-21
Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 4/200 (2%)
Frame = +1
Query: 55 PKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHSDSPW 234
PK+EGGL +R + NK ++L+W++ K+SLW H +L R S W V W
Sbjct: 861 PKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSW 920
Query: 235 TWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRYNKVA 414
TW+++L +R LA F+ +GNG + +W +NW +G L ++I + KVA
Sbjct: 921 TWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVA 980
Query: 415 EILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNEEDMVVWNPVDSGI----FSIKTAWD 582
+++GW P S + I + T+ +ED+ + +G FS W+
Sbjct: 981 SAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWE 1040
Query: 583 KVRISYPTCPWWSMVWFPQA 642
+R W S +WF A
Sbjct: 1041 AIRPKATVKSWASSIWFKGA 1060
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 104 bits (260), Expect = 2e-20
Identities = 66/200 (33%), Positives = 94/200 (47%), Gaps = 7/200 (3%)
Frame = +1
Query: 55 PKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*--IHESYLKRDSIWTVTPHSDS 228
PKAEGGL +R + N A L+L+W + N SLW+ H + W + +
Sbjct: 132 PKAEGGLGVRKFTEWNTALNLKLIWLLFSNSGSLWVAWHLFHNLSTSVSNFWLIKEGTTD 191
Query: 229 PWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRYNK 408
W WR +L++R LA+ F+ IGNG FW ++W P G L I + +K
Sbjct: 192 SWNWRCLLRLRPLASKFLFCSIGNGLTASFWADSWTPFGPLLTFIGSDGPRNQRIPLCSK 251
Query: 409 VAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNE--EDMVVW---NPVDSGIFSIKT 573
VA+++N W P+ ++N L + A T IP ED +W N D G FS
Sbjct: 252 VADVVNGNRWLLPSPRSSNALNL-HAFLTTLSIPLQPLVEDSYLWKVENCSDIG-FSSAH 309
Query: 574 AWDKVRISYPTCPWWSMVWF 633
W+ +R PW S VWF
Sbjct: 310 TWNALRHKEVEKPWVSSVWF 329
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 102 bits (254), Expect = 1e-19
Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 4/201 (1%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHS 222
E+ + K EGGL ++ K+ N+ LL+L+W+I ++SLW+K +++ +++++ W+V ++
Sbjct: 1011 EVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENT 1070
Query: 223 D-SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
W WRKILK R+ A F + + +G T FW ++W P+G L Q + + +
Sbjct: 1071 GLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPN 1130
Query: 400 YNKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNEEDMVVWNPVD---SGIFSIK 570
VAE++N + N QI + ++ + D +W + FS
Sbjct: 1131 NATVAEVMNTHRRKRHRADFLN--QIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSS 1188
Query: 571 TAWDKVRISYPTCPWWSMVWF 633
W ++R C W+ VWF
Sbjct: 1189 KTWQQIRSISLRCDWYRGVWF 1209
>ref|XP_004305958.1| PREDICTED: uncharacterized protein LOC101308407 [Fragaria vesca
subsp. vesca]
Length = 177
Score = 102 bits (253), Expect = 1e-19
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 1/160 (0%)
Frame = +1
Query: 151 SLWIK*IHESYLKRDSIWTVTPHSDSPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNN 330
SLW I ++L+ S W V+ W WRK+LKIR+ IK +IG+G T FW +
Sbjct: 14 SLWSSWIKVNFLRDKSFWMVSTPQICSWNWRKLLKIRDFIRPSIKHIIGDGKSTYFWHDY 73
Query: 331 WHPMGILEQLIPPSNRLGSALQRYNKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIP 510
WHP G L + P + S + V+ I+ E W +P S N+ +L++ A IP
Sbjct: 74 WHPFGPLLPRLGPGAMINSGIPSNALVSSIVKGESWCWPLSTNSAILRV--ASNVEGLIP 131
Query: 511 WNE-EDMVVWNPVDSGIFSIKTAWDKVRISYPTCPWWSMV 627
+ +D +W P SGIFS + D++ I +P W +V
Sbjct: 132 NSSCKDSCIWLPSTSGIFSTASTMDQIWIHHPVVDWAKIV 171
>gb|ABE65398.1| hypothetical protein At1g43570 [Arabidopsis thaliana]
Length = 348
Score = 101 bits (251), Expect = 2e-19
Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHS 222
++ P EGGL +R K++N L+L+W++ ++ SLW + + ++R++ W + S
Sbjct: 88 KVCLPMCEGGLGLRPLKEINTVCGLKLIWRLLASQTSLWGQWVQTYLIRRNNFWAIKASS 147
Query: 223 -DSPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
W WRK+L +R++A +F K I NG T FW ++W MG L ++ + +
Sbjct: 148 YQGSWMWRKLLTLRDVARSFHKKEIHNGRNTSFWYDHWSSMGTLVDVLGARGCIDLGITT 207
Query: 400 YNKVAEILNQEGWSFPTSGNTNLLQI---FEACKTIQRIPWNEEDMVVWNPVD--SGIFS 564
+ + S G+ L++I EA KT R + ED+ +W P FS
Sbjct: 208 TTNMENVFTTRR-SRKHRGDL-LVRIEAEIEAAKT--RHQPDIEDIDLWKPSTGYKKTFS 263
Query: 565 IKTAWDKVRISYPTCPWWSMVWFPQ 639
+ W +R++ P C W VWFP+
Sbjct: 264 TRETWKLIRMAEPVCEWAKGVWFPK 288
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 101 bits (251), Expect = 2e-19
Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 3/199 (1%)
Frame = +1
Query: 55 PKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHSDSPW 234
PK+EGGL R + NK LL+L+W + SLW + L S W V PW
Sbjct: 721 PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPW 780
Query: 235 TWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRYNKVA 414
TW+ +L +R LA FIK+ +GNG FW + W +G L + + + KVA
Sbjct: 781 TWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVA 840
Query: 415 EILNQEGWSFPTSGNTNLLQIFEACKTI-QRIPWNEEDMVVW--NPVDSGIFSIKTAWDK 585
+ ++ GW P S + I ++ P D W + VD FS W+
Sbjct: 841 DAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEV 900
Query: 586 VRISYPTCPWWSMVWFPQA 642
+R P W VWF A
Sbjct: 901 LRPRRPVKRWAKSVWFKGA 919
>gb|ABK28140.1| unknown [Arabidopsis thaliana]
Length = 349
Score = 101 bits (251), Expect = 2e-19
Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 6/205 (2%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHS 222
++ P EGGL +R K++N L+L+W++ ++ SLW + + ++R++ W + S
Sbjct: 88 KVCLPMCEGGLGLRPLKEINTVCGLKLIWRLLASQTSLWGQWVQTYLIRRNNFWAIKASS 147
Query: 223 -DSPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
W WRK+L +R++A +F K I NG T FW ++W MG L ++ + +
Sbjct: 148 YQGSWMWRKLLTLRDVARSFHKKEIHNGRNTSFWYDHWSSMGTLVDVLGARGCIDLGITT 207
Query: 400 YNKVAEILNQEGWSFPTSGNTNLLQI---FEACKTIQRIPWNEEDMVVWNPVD--SGIFS 564
+ + S G+ L++I EA KT R + ED+ +W P FS
Sbjct: 208 TTNMENVFTTRR-SRKHRGDL-LVRIEAEIEAAKT--RHQPDIEDIDLWKPSTGYKKTFS 263
Query: 565 IKTAWDKVRISYPTCPWWSMVWFPQ 639
+ W +R++ P C W VWFP+
Sbjct: 264 TRETWKLIRMAEPVCEWAKGVWFPK 288
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 100 bits (250), Expect = 3e-19
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 6/206 (2%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYL-KRDSIWTVTPH 219
++ PKAEGG+ +R N+ L+++W + N SLW+ + L K S W
Sbjct: 754 QVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEK 813
Query: 220 SDSPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
W W+ +L++R +A FI+ +GNG + FW +NW P G L + + +
Sbjct: 814 PHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHL 873
Query: 400 YNKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNEEDM-----VVWNPVDSGIFS 564
K++++ EGWS + L + I +P + +D+ VV N V G FS
Sbjct: 874 NAKISDVCTSEGWSIADPRSDQALSLHTHLTNIS-MPSDAQDLDSYDWVVDNKVCQG-FS 931
Query: 565 IKTAWDKVRISYPTCPWWSMVWFPQA 642
W +R S PW VWF A
Sbjct: 932 AAATWSALRPSSAPVPWARAVWFKGA 957
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 100 bits (250), Expect = 3e-19
Identities = 62/199 (31%), Positives = 87/199 (43%), Gaps = 3/199 (1%)
Frame = +1
Query: 55 PKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHSDSPW 234
PK+EGGL R + NK LL+L+W + SLW + L S W V PW
Sbjct: 721 PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPW 780
Query: 235 TWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRYNKVA 414
TW+ +L +R LA FIK+ +GNG FW + W +G L + + + KVA
Sbjct: 781 TWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVA 840
Query: 415 EILNQEGWSFPTSGNTNLLQIFEACKTI-QRIPWNEEDMVVW--NPVDSGIFSIKTAWDK 585
+ ++ GW P S + I ++ P D W + VD FS W+
Sbjct: 841 DAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEV 900
Query: 586 VRISYPTCPWWSMVWFPQA 642
+R P W VWF A
Sbjct: 901 LRPRRPVKRWARSVWFKGA 919
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 97.1 bits (240), Expect = 4e-18
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 4/204 (1%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHS 222
++ PK EGGL +R + NK L+L+W++ + SLW++ + + +++ S W++ S
Sbjct: 84 DVCMPKEEGGLGLRSLTEANKVCCLKLIWRLL-SSSSLWVQWLRQYVIRKGSFWSLRDTS 142
Query: 223 D-SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
W WRK+LK R+LA+ F + I NG FW +NW P+G L + + +
Sbjct: 143 TLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWSPLGPLIAISGTRGCIDMGIDI 202
Query: 400 YNKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNEEDMVVWNPVDSGI---FSIK 570
+ VAE L + E +T + ED+V+W FS K
Sbjct: 203 HATVAEALTHRRRRHRADHLNQMEAQLEELRTKGLV--ETEDVVLWKGKGGRFKPSFSTK 260
Query: 571 TAWDKVRISYPTCPWWSMVWFPQA 642
W R P W+ +WF A
Sbjct: 261 ETWADTREQKPRNEWYQGIWFSHA 284
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 96.3 bits (238), Expect = 7e-18
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 6/199 (3%)
Frame = +1
Query: 55 PKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHSDSPW 234
PKAEGGL +R NK L+L+W + ++SLW+ H + L+ + W S W
Sbjct: 860 PKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSW 919
Query: 235 TWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQRYNKVA 414
W+ IL +R LA F++ +GNG +W ++W +G L + I S + + V
Sbjct: 920 IWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVT 979
Query: 415 EILNQEGWSFPTSGNTNLLQIFEACKTIQRIPW----NEEDMVVW--NPVDSGIFSIKTA 576
E + GW P S T + T+ P ED W S FS K
Sbjct: 980 EASSSTGWILP-SARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLT 1038
Query: 577 WDKVRISYPTCPWWSMVWF 633
W+ +R T W + VW+
Sbjct: 1039 WECLRQRDTTKLWAAAVWY 1057
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 95.9 bits (237), Expect = 9e-18
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 6/206 (2%)
Frame = +1
Query: 43 EITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHS 222
++ PK EGGL IR K+ NK LL+L+W++ + SLW++ + L++ S W+++ ++
Sbjct: 120 DVCTPKDEGGLGIRSLKEANKVSLLKLIWRML-SSTSLWVQWLRLYLLRKGSFWSISGNT 178
Query: 223 D-SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGILEQLIPPSNRLGSALQR 399
W W+KILK R LA+ F+K I NG+ T FW +NW +G L + + +
Sbjct: 179 TLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITL 238
Query: 400 YNKVAE-ILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNE-EDMVVW---NPVDSGIFS 564
+ VAE ++N + LL+I + ++ ED V W + F+
Sbjct: 239 HASVAEAVVNHRP---RRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFN 295
Query: 565 IKTAWDKVRISYPTCPWWSMVWFPQA 642
K W R W+ VWF A
Sbjct: 296 TKETWAATREPKLKVNWYKGVWFSHA 321
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
hypothetical protein At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 95.1 bits (235), Expect = 2e-17
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Frame = +1
Query: 46 ITRPKAEGGLNIRIPKDMNKADLLQLLWKIACNKESLWIK*IHESYLKRDSIWTVTPHSD 225
+ PK+EGGL +R ++ NK +L+L+W+I K SLW+ + + L+ S+W V S
Sbjct: 24 VCTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKETSS 83
Query: 226 -SPWTWRKILKIRNLAATFIKSVIGNGNETKFWLNNWHPMGIL----------EQLIPPS 372
W W+K+LK R+ A F K + NG T FW ++W +G L + IP
Sbjct: 84 RGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWSSLGCLYDKFGERGCIDMGIPKD 143
Query: 373 NRLGSAL---QRYNKVAEILNQEGWSFPTSGNTNLLQIFEACKTIQRIPWNEEDMVVWNP 543
+ L SA+ +R +LN + ++ E D+ +W
Sbjct: 144 STLSSAIMTTRRRKHRQPLLNAVETEIQKQKQSRIV--------------TERDVALWKG 189
Query: 544 VDSGI---FSIKTAWDKVRISYPTCPWWSMVWFPQA 642
+ G F K W ++R + P + +WF A
Sbjct: 190 KEDGFHPTFLSKETWSQIRNTQPEMQGYRGIWFSNA 225