BLASTX nr result
ID: Cocculus23_contig00022937
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00022937
(229 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324341.2| RNA recognition motif-containing family prot... 60 3e-07
ref|XP_006483724.1| PREDICTED: LOW QUALITY PROTEIN: U2 snRNP-ass... 58 2e-06
ref|XP_006450262.1| hypothetical protein CICLE_v10007357mg [Citr... 58 2e-06
ref|XP_002308714.1| RNA recognition motif-containing family prot... 57 4e-06
emb|CAN79213.1| hypothetical protein VITISV_025939 [Vitis vinifera] 57 4e-06
ref|XP_004291970.1| PREDICTED: U2 snRNP-associated SURP motif-co... 56 5e-06
emb|CBI21155.3| unnamed protein product [Vitis vinifera] 56 5e-06
ref|XP_007011691.1| RNA recognition motif-containing protein iso... 56 6e-06
>ref|XP_002324341.2| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|550317898|gb|EEF02906.2| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 969
Score = 60.1 bits (144), Expect = 3e-07
Identities = 33/76 (43%), Positives = 36/76 (47%)
Frame = +1
Query: 1 PSFIPPPLANXXXXXXXXXXXXXXXXXXXXXLRNIDNFMEELKLXXXXXXXXXXXXXXWR 180
PSFIPPP+A+ RNID+FMEELK WR
Sbjct: 89 PSFIPPPMASKGKELEKKREEERPKEKEKGKTRNIDHFMEELKHEHEMRERRNQEREHWR 148
Query: 181 EGRHNESSVSISRFDE 228
EGRHNESS SRFDE
Sbjct: 149 EGRHNESSAPSSRFDE 164
>ref|XP_006483724.1| PREDICTED: LOW QUALITY PROTEIN: U2 snRNP-associated SURP
motif-containing protein-like [Citrus sinensis]
Length = 1017
Score = 57.8 bits (138), Expect = 2e-06
Identities = 33/76 (43%), Positives = 34/76 (44%)
Frame = +1
Query: 1 PSFIPPPLANXXXXXXXXXXXXXXXXXXXXXLRNIDNFMEELKLXXXXXXXXXXXXXXWR 180
PSFIPPPLA RNIDNFMEELK WR
Sbjct: 132 PSFIPPPLAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWR 191
Query: 181 EGRHNESSVSISRFDE 228
+GRH ESS SRFDE
Sbjct: 192 DGRHTESSAPSSRFDE 207
>ref|XP_006450262.1| hypothetical protein CICLE_v10007357mg [Citrus clementina]
gi|567916514|ref|XP_006450263.1| hypothetical protein
CICLE_v10007357mg [Citrus clementina]
gi|557553488|gb|ESR63502.1| hypothetical protein
CICLE_v10007357mg [Citrus clementina]
gi|557553489|gb|ESR63503.1| hypothetical protein
CICLE_v10007357mg [Citrus clementina]
Length = 973
Score = 57.8 bits (138), Expect = 2e-06
Identities = 33/76 (43%), Positives = 34/76 (44%)
Frame = +1
Query: 1 PSFIPPPLANXXXXXXXXXXXXXXXXXXXXXLRNIDNFMEELKLXXXXXXXXXXXXXXWR 180
PSFIPPPLA RNIDNFMEELK WR
Sbjct: 88 PSFIPPPLAAKGKDSERKKEEERPREKDRGKSRNIDNFMEELKHEQEMRERRNQEREHWR 147
Query: 181 EGRHNESSVSISRFDE 228
+GRH ESS SRFDE
Sbjct: 148 DGRHTESSAPSSRFDE 163
>ref|XP_002308714.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222854690|gb|EEE92237.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 988
Score = 56.6 bits (135), Expect = 4e-06
Identities = 32/76 (42%), Positives = 34/76 (44%)
Frame = +1
Query: 1 PSFIPPPLANXXXXXXXXXXXXXXXXXXXXXLRNIDNFMEELKLXXXXXXXXXXXXXXWR 180
PSFIPPP+A RNID+FMEELK WR
Sbjct: 89 PSFIPPPMAPKGKEPERKREEERPKEKEKGKTRNIDHFMEELKHEHEMRERRNQEREHWR 148
Query: 181 EGRHNESSVSISRFDE 228
EGRH ESS SRFDE
Sbjct: 149 EGRHTESSAPSSRFDE 164
>emb|CAN79213.1| hypothetical protein VITISV_025939 [Vitis vinifera]
Length = 1384
Score = 56.6 bits (135), Expect = 4e-06
Identities = 33/76 (43%), Positives = 36/76 (47%)
Frame = +1
Query: 1 PSFIPPPLANXXXXXXXXXXXXXXXXXXXXXLRNIDNFMEELKLXXXXXXXXXXXXXXWR 180
PSFIPPPLA RNID+FMEELK WR
Sbjct: 207 PSFIPPPLAAKGXEPDKKKEEEKPKEREKGKSRNIDHFMEELKHEQEMRERRNQERDQWR 266
Query: 181 EGRHNESSVSISRFDE 228
+GRHN+SS SRFDE
Sbjct: 267 DGRHNDSSAPPSRFDE 282
>ref|XP_004291970.1| PREDICTED: U2 snRNP-associated SURP motif-containing protein-like
[Fragaria vesca subsp. vesca]
Length = 980
Score = 56.2 bits (134), Expect = 5e-06
Identities = 31/76 (40%), Positives = 37/76 (48%)
Frame = +1
Query: 1 PSFIPPPLANXXXXXXXXXXXXXXXXXXXXXLRNIDNFMEELKLXXXXXXXXXXXXXXWR 180
PSF+PPPLA+ RNID+FMEELK WR
Sbjct: 89 PSFLPPPLASKGKESDKKREEEKPKEKEKGKSRNIDHFMEELKQEQELRERRNQEREHWR 148
Query: 181 EGRHNESSVSISRFDE 228
+GR NE+SV+ SRFDE
Sbjct: 149 DGRPNENSVASSRFDE 164
>emb|CBI21155.3| unnamed protein product [Vitis vinifera]
Length = 941
Score = 56.2 bits (134), Expect = 5e-06
Identities = 32/76 (42%), Positives = 35/76 (46%)
Frame = +1
Query: 1 PSFIPPPLANXXXXXXXXXXXXXXXXXXXXXLRNIDNFMEELKLXXXXXXXXXXXXXXWR 180
PSFIPPPLA RNID+FMEELK WR
Sbjct: 89 PSFIPPPLAAKGKEPDKKKEEEKPKEREKGKSRNIDHFMEELKHEQEMRERRNQERDQWR 148
Query: 181 EGRHNESSVSISRFDE 228
+GRHN+SS SRFDE
Sbjct: 149 DGRHNDSSALPSRFDE 164
>ref|XP_007011691.1| RNA recognition motif-containing protein isoform 1 [Theobroma
cacao] gi|508782054|gb|EOY29310.1| RNA recognition
motif-containing protein isoform 1 [Theobroma cacao]
Length = 985
Score = 55.8 bits (133), Expect = 6e-06
Identities = 31/76 (40%), Positives = 34/76 (44%)
Frame = +1
Query: 1 PSFIPPPLANXXXXXXXXXXXXXXXXXXXXXLRNIDNFMEELKLXXXXXXXXXXXXXXWR 180
PSFIPPP+A RNIDNFMEELK WR
Sbjct: 89 PSFIPPPMAAKGKESEKKKEEERLKEKEKGKSRNIDNFMEELKHEQEMRERRNQEREHWR 148
Query: 181 EGRHNESSVSISRFDE 228
+GRH +SS SRFDE
Sbjct: 149 DGRHTDSSAPSSRFDE 164