BLASTX nr result
ID: Cocculus23_contig00022603
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00022603
(832 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 194 e-112
emb|CAN81775.1| hypothetical protein VITISV_020071 [Vitis vinifera] 183 e-109
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 182 e-109
emb|CAN81776.1| hypothetical protein VITISV_020072 [Vitis vinifera] 183 e-109
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera] 186 e-108
gb|AAP43919.1| integrase [Gossypium hirsutum] 188 e-105
gb|AAP43914.1| integrase [Gossypium raimondii] 175 e-104
emb|CAN74758.1| hypothetical protein VITISV_039181 [Vitis vinifera] 188 e-102
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 173 e-102
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 172 e-102
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 181 e-101
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 181 e-101
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 179 e-100
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 179 e-100
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 177 e-100
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 179 1e-99
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 179 2e-99
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 179 5e-99
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 173 2e-98
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 179 2e-98
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 194 bits (492), Expect(3) = e-112
Identities = 90/126 (71%), Positives = 112/126 (88%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKL+RRHAKW+EF+ETFPYV+KYK+G+ENIV DALSRRYALVS LN LLGFE++K+LY
Sbjct: 684 QGKLNRRHAKWVEFIETFPYVIKYKQGKENIVVDALSRRYALVSTLNAKLLGFEYVKELY 743
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
ND+DF +V A EK+AF KFY++DG+LFRE++LC+PNSS+R+LLVR+AH GLMGHFGV
Sbjct: 744 ANDDDFASVYGACEKVAFGKFYRLDGYLFRENRLCVPNSSMRELLVREAHEGGLMGHFGV 803
Query: 361 QKTRSV 378
+KT V
Sbjct: 804 RKTLDV 809
Score = 170 bits (431), Expect(3) = e-112
Identities = 80/105 (76%), Positives = 90/105 (85%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K L+VL EH FWPKMKRDVER CA+CIT R AKSK +PHGLYT L VPS PWVDISMDFV
Sbjct: 805 KTLDVLHEHIFWPKMKRDVERACARCITYRHAKSKVLPHGLYTTLLVPSAPWVDISMDFV 864
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGL R++ G+DSIFVVVDRFSKM HFI CHK +DAT+IA+LFFR+
Sbjct: 865 LGLLRSRNGRDSIFVVVDRFSKMTHFISCHKTDDATHIANLFFRK 909
Score = 89.4 bits (220), Expect(3) = e-112
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +3
Query: 678 VRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
VRLH + RSIVSD+DV FLS WKVLWGK+GTKLLFSTTCHPQTDGQ EV
Sbjct: 911 VRLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKLLFSTTCHPQTDGQIEV 960
>emb|CAN81775.1| hypothetical protein VITISV_020071 [Vitis vinifera]
Length = 1159
Score = 183 bits (464), Expect(3) = e-109
Identities = 83/105 (79%), Positives = 94/105 (89%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K LEVL EHFFWPKMKRDVER+C +CIT R+ KSK +PHGLYTPLPVPS PW DISMDFV
Sbjct: 878 KTLEVLHEHFFWPKMKRDVERVCVRCITYRQTKSKVLPHGLYTPLPVPSAPWFDISMDFV 937
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPR++ G++SIFVVVDRFSKM HFI CHKI+DAT+IA+LFFRE
Sbjct: 938 LGLPRSRNGRNSIFVVVDRFSKMRHFISCHKIDDATHIANLFFRE 982
Score = 181 bits (460), Expect(3) = e-109
Identities = 87/126 (69%), Positives = 106/126 (84%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKL+ RH KW+EF+ETF YV+KYK+G+ENIV DALSRRYALVS LN LLGFE++K+LY
Sbjct: 757 QGKLNIRHPKWVEFIETFSYVIKYKQGKENIVVDALSRRYALVSTLNAKLLGFEYVKELY 816
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
ND+D +V A EK AF KFY++DG+LFRE+KLC+PNSS+ +LLV KAHG GLMGHFGV
Sbjct: 817 ANDDDLASVYGACEKAAFGKFYRLDGYLFRENKLCVPNSSMCELLVCKAHGGGLMGHFGV 876
Query: 361 QKTRSV 378
+KT V
Sbjct: 877 RKTLEV 882
Score = 81.6 bits (200), Expect(3) = e-109
Identities = 40/52 (76%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V RSIVSD+DV FL+Y WKVL K+GTKLLF TT HPQTDGQTEV
Sbjct: 982 EIVRLHGVPRSIVSDRDVKFLNYFWKVLLXKLGTKLLFXTTXHPQTDGQTEV 1033
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 182 bits (463), Expect(3) = e-109
Identities = 81/106 (76%), Positives = 95/106 (89%)
Frame = +2
Query: 359 SKRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDF 538
SK ++V+Q+HF WP MKRDVERIC +C TC++AK+KS PHGLYTPLP+PS PW DISMDF
Sbjct: 1403 SKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDF 1462
Query: 539 VLGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
V+GLPRT+ GKDSIFVVVDRFSKMAHFIPCHK +DA +IA+LFFRE
Sbjct: 1463 VVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFRE 1508
Score = 175 bits (444), Expect(3) = e-109
Identities = 81/126 (64%), Positives = 105/126 (83%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL++RHA+W+EF+ETFPYV+KYKKG++N+VADALSRRY L+S+L+ LLGFE IK LY
Sbjct: 1283 QQKLNKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLY 1342
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
ND+DF + + EK AF K+Y+ DGFLF +++LCIPNSS+R+L +R+AHG GLMGHFGV
Sbjct: 1343 ANDSDFEKIYSSCEKFAFGKYYRHDGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGV 1402
Query: 361 QKTRSV 378
KT V
Sbjct: 1403 SKTIKV 1408
Score = 87.4 bits (215), Expect(3) = e-109
Identities = 39/52 (75%), Positives = 44/52 (84%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH + ++IVSD+D FLSY WK LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 1508 EVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEV 1559
>emb|CAN81776.1| hypothetical protein VITISV_020072 [Vitis vinifera]
Length = 366
Score = 183 bits (464), Expect(3) = e-109
Identities = 83/105 (79%), Positives = 94/105 (89%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K LEVL EHFFWPKMKRDVER+C +CIT R+ KSK +PHGLYTPLPVPS PW DISMDFV
Sbjct: 183 KTLEVLHEHFFWPKMKRDVERVCVRCITYRQTKSKVLPHGLYTPLPVPSAPWFDISMDFV 242
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPR++ G++SIFVVVDRFSKM HFI CHKI+DAT+IA+LFFRE
Sbjct: 243 LGLPRSRNGRNSIFVVVDRFSKMRHFISCHKIDDATHIANLFFRE 287
Score = 181 bits (460), Expect(3) = e-109
Identities = 87/126 (69%), Positives = 106/126 (84%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKL+ RH KW+EF+ETF YV+KYK+G+ENIV DALSRRYALVS LN LLGFE++K+LY
Sbjct: 62 QGKLNIRHPKWVEFIETFSYVIKYKQGKENIVVDALSRRYALVSTLNAKLLGFEYVKELY 121
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
ND+D +V A EK AF KFY++DG+LFRE+KLC+PNSS+ +LLV KAHG GLMGHFGV
Sbjct: 122 ANDDDLASVYGACEKAAFGKFYRLDGYLFRENKLCVPNSSMCELLVCKAHGGGLMGHFGV 181
Query: 361 QKTRSV 378
+KT V
Sbjct: 182 RKTLEV 187
Score = 80.1 bits (196), Expect(3) = e-109
Identities = 39/51 (76%), Positives = 42/51 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTE 824
E VRLH V RSIVSD+DV FL+Y WKVL K+GTKLLF TT HPQTDGQTE
Sbjct: 287 EIVRLHGVPRSIVSDRDVKFLNYFWKVLLXKLGTKLLFXTTXHPQTDGQTE 337
>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
Length = 960
Score = 186 bits (471), Expect(3) = e-108
Identities = 87/126 (69%), Positives = 109/126 (86%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL+RRHAKW+EF+ETFPYVVKYK+G+ENIV +ALSRRYALVS LN LLGFE++K+LY
Sbjct: 545 QDKLNRRHAKWVEFIETFPYVVKYKQGKENIVVNALSRRYALVSTLNAKLLGFEYVKELY 604
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
NDNDF ++ A EK AF KFY++DG+LFRE++LC+PNSS+ +LLV +AHG GLMGHFGV
Sbjct: 605 ANDNDFASLYGACEKAAFGKFYRLDGYLFRENRLCVPNSSMCELLVHEAHGGGLMGHFGV 664
Query: 361 QKTRSV 378
++T V
Sbjct: 665 RRTLDV 670
Score = 171 bits (434), Expect(3) = e-108
Identities = 80/105 (76%), Positives = 92/105 (87%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
+ L+VL EHFFWPKMKRDVER CA+CIT R+AKS+ +PH LYTPL V S WVDISMDFV
Sbjct: 666 RTLDVLYEHFFWPKMKRDVERACARCITYRQAKSRVLPHRLYTPLLVSSASWVDISMDFV 725
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPR++ G+DSIFVVVDRFSKMAHFI CHK +DAT+IA+LFFRE
Sbjct: 726 LGLPRSRNGRDSIFVVVDRFSKMAHFISCHKADDATHIANLFFRE 770
Score = 85.5 bits (210), Expect(3) = e-108
Identities = 40/52 (76%), Positives = 44/52 (84%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V RSIVSD+DV FLSY WKV W K+GTKLLFSTTC PQTDGQT++
Sbjct: 770 EIVRLHGVPRSIVSDQDVKFLSYFWKVFWRKLGTKLLFSTTCPPQTDGQTKI 821
>gb|AAP43919.1| integrase [Gossypium hirsutum]
Length = 334
Score = 188 bits (478), Expect(3) = e-105
Identities = 80/106 (75%), Positives = 99/106 (93%)
Frame = +2
Query: 359 SKRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDF 538
+K L++LQEHF WP MK+DVE++C+KCITC++AKSK M HGLYTPLP+P+ PWVD+SMDF
Sbjct: 182 AKTLDILQEHFHWPHMKKDVEKVCSKCITCKQAKSKVMLHGLYTPLPIPTSPWVDLSMDF 241
Query: 539 VLGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
+LGLPRTKKG+DSIFVVVDRFSKM+HFIPCHK +DAT++ADLFF+E
Sbjct: 242 ILGLPRTKKGRDSIFVVVDRFSKMSHFIPCHKTDDATHVADLFFKE 287
Score = 159 bits (402), Expect(3) = e-105
Identities = 74/126 (58%), Positives = 98/126 (77%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKLS+RHA+W+EF+ETFPY+++YK G +N+VADALSRRY L++ LN +LGFE IK+LY
Sbjct: 62 QGKLSKRHARWVEFIETFPYMIQYKIGNDNVVADALSRRYTLITTLNAKVLGFEHIKELY 121
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
+D DF+ + AF+KFY VDG LFR ++LCIP S+R+LL+ +AH GLMGHFGV
Sbjct: 122 DDDTDFSHIYKNCGHTAFEKFYLVDGLLFRLNRLCIPKCSMRELLIHEAHSGGLMGHFGV 181
Query: 361 QKTRSV 378
KT +
Sbjct: 182 AKTLDI 187
Score = 83.2 bits (204), Expect(3) = e-105
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDG 815
E VRLH + ++IVSD+DV FLS+ WKVLWGK+GTKLL+STTCHPQTDG
Sbjct: 287 EVVRLHGIPKTIVSDRDVKFLSHFWKVLWGKLGTKLLYSTTCHPQTDG 334
>gb|AAP43914.1| integrase [Gossypium raimondii]
Length = 340
Score = 175 bits (443), Expect(3) = e-104
Identities = 77/106 (72%), Positives = 92/106 (86%)
Frame = +2
Query: 359 SKRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDF 538
+K +VL EHF+WP M++ VE+IC+ CITC++ KS MPHGLYTPLPVPS PW DIS+DF
Sbjct: 182 TKTYDVLHEHFYWPNMRKLVEKICSTCITCKQDKSTVMPHGLYTPLPVPSSPWTDISIDF 241
Query: 539 VLGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
V+GLP TK G+DSIFVVVDRFSKMAHFIPCHK +DAT++ADLFFRE
Sbjct: 242 VIGLPITKHGRDSIFVVVDRFSKMAHFIPCHKTDDATHVADLFFRE 287
Score = 170 bits (431), Expect(3) = e-104
Identities = 79/126 (62%), Positives = 104/126 (82%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKL++RHA+W+EF+E+FPY ++YKKG++NIVADALSRRY L+S L+T LLGFE++KDLY
Sbjct: 62 QGKLNKRHARWVEFIESFPYGIRYKKGKDNIVADALSRRYTLLSTLHTKLLGFEYLKDLY 121
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
D+DF ++ A E AF KFYK DG+LF+ ++LC+P S+R+LLVR+AH GLMGHFGV
Sbjct: 122 ATDSDFASIYDACEHGAFHKFYKHDGYLFQNNRLCLPKCSMRELLVREAHSGGLMGHFGV 181
Query: 361 QKTRSV 378
KT V
Sbjct: 182 TKTYDV 187
Score = 83.2 bits (204), Expect(3) = e-104
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQ 818
E VRLH + R+IVSD+D FLS+ WKVLWGK+GTKLL+STTCHPQTDG+
Sbjct: 287 EVVRLHGIPRTIVSDRDAKFLSHFWKVLWGKLGTKLLYSTTCHPQTDGR 335
>emb|CAN74758.1| hypothetical protein VITISV_039181 [Vitis vinifera]
Length = 337
Score = 188 bits (477), Expect(3) = e-102
Identities = 87/126 (69%), Positives = 112/126 (88%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKL+RRHAKW+EF+ETF YV+KYK+G+ENIVADALSRRYALVS LN LLGFE++K+LY
Sbjct: 61 QGKLNRRHAKWVEFIETFSYVIKYKQGKENIVADALSRRYALVSTLNAKLLGFEYVKELY 120
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
ND+DF +V A EK+AF KFY++DG+LFR+++LC+PNSS+ +L+VR+AH GLMGHFGV
Sbjct: 121 ANDDDFASVYGACEKVAFGKFYRLDGYLFRDNRLCVPNSSMPELIVREAHRGGLMGHFGV 180
Query: 361 QKTRSV 378
+KT +V
Sbjct: 181 RKTLNV 186
Score = 141 bits (356), Expect(3) = e-102
Identities = 68/105 (64%), Positives = 79/105 (75%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K L VL EHFFW KMKRDVER C +CIT R+AKS+ +PHGLYTPLPVPS
Sbjct: 182 KTLNVLHEHFFWSKMKRDVERACTRCITYRQAKSRVLPHGLYTPLPVPS----------- 230
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LPR++ G+DSIFVVVDRFSKM HFI CHK +DAT+IA+ FF+E
Sbjct: 231 --LPRSRNGRDSIFVVVDRFSKMTHFISCHKTDDATHIANXFFKE 273
Score = 92.0 bits (227), Expect(3) = e-102
Identities = 43/52 (82%), Positives = 45/52 (86%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V RSIVSD+DV FLSY WKVLWGK+GTKLLF TCHPQTDGQTEV
Sbjct: 273 EIVRLHGVPRSIVSDRDVKFLSYFWKVLWGKLGTKLLFLATCHPQTDGQTEV 324
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 173 bits (439), Expect(3) = e-102
Identities = 73/105 (69%), Positives = 93/105 (88%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K LE+L EHF+WP M++DVE++C+ C+ C++AKS+++PHGLYTPLPV + PW+DISMDF+
Sbjct: 1166 KTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFI 1225
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTK GKDSIFVVVDRFSKMA FIPC K NDA+++ADLF +E
Sbjct: 1226 LGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADLFVKE 1270
Score = 160 bits (405), Expect(3) = e-102
Identities = 78/126 (61%), Positives = 98/126 (77%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKLSRRHAKW+EF+ETFPYV+ YK+G+EN+VADALSRRY L+S L + LLGF+ IK LY
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
ND+DF + + F+KF D FLF+E+KLC+PN S+R+L VR+AH GLMGHFGV
Sbjct: 1105 ANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164
Query: 361 QKTRSV 378
KT +
Sbjct: 1165 PKTLEI 1170
Score = 87.0 bits (214), Expect(3) = e-102
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E V+LH + R+IVSD+D FLS+ W++LWGK+GTKLLFST+CHPQTDGQTEV
Sbjct: 1270 EVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEV 1321
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 172 bits (436), Expect(3) = e-102
Identities = 73/105 (69%), Positives = 93/105 (88%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K LE+L EHF+WP M++DVE++C+ C+ C++AKS+++PHGLYTPLPV + PW+DISMDF+
Sbjct: 1166 KTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFI 1225
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTK GKDSIFVVVDRFSKMA FIPC K NDA+++ADLF +E
Sbjct: 1226 LGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADLFVKE 1270
Score = 160 bits (405), Expect(3) = e-102
Identities = 78/126 (61%), Positives = 98/126 (77%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKLSRRHAKW+EF+ETFPYV+ YK+G+EN+VADALSRRY L+S L + LLGF+ IK LY
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104
Query: 181 VNDNDFTTVC*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFGV 360
ND+DF + + F+KF D FLF+E+KLC+PN S+R+L VR+AH GLMGHFGV
Sbjct: 1105 ANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGV 1164
Query: 361 QKTRSV 378
KT +
Sbjct: 1165 PKTLEI 1170
Score = 87.0 bits (214), Expect(3) = e-102
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E V+LH + R+IVSD+D FLS+ W++LWGK+GTKLLFST+CHPQTDGQTEV
Sbjct: 1270 EVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEV 1321
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 181 bits (460), Expect(3) = e-101
Identities = 82/105 (78%), Positives = 93/105 (88%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K ++L +HFFWPKM+RDVER A+C TC+KAKS+ PHGLY PLPVPS PW DISMDFV
Sbjct: 554 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 613
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTKKG+DSIFVVVDRFSKMAHFIPCHK +DAT++ADLFFRE
Sbjct: 614 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFRE 658
Score = 151 bits (381), Expect(3) = e-101
Identities = 73/127 (57%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL+RRHAKW+EF+E+FPYV+K+KKG+EN++ADALSRRYA++S L+ + G E IK+ Y
Sbjct: 432 QAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQY 491
Query: 181 VNDNDFTTV-C*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
+D+DF V E ++KF +GF+FR +KLCIP SSVR LL+++AHG GLMGHFG
Sbjct: 492 AHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFG 551
Query: 358 VQKTRSV 378
V+KT +
Sbjct: 552 VKKTEDI 558
Score = 84.7 bits (208), Expect(3) = e-101
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V +IVSD+D FLS+ W+ LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 658 EIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 709
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 181 bits (460), Expect(3) = e-101
Identities = 82/105 (78%), Positives = 93/105 (88%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K ++L +HFFWPKM+RDVER A+C TC+KAKS+ PHGLY PLPVPS PW DISMDFV
Sbjct: 1241 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1300
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTKKG+DSIFVVVDRFSKMAHFIPCHK +DAT++ADLFFRE
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFRE 1345
Score = 151 bits (382), Expect(3) = e-101
Identities = 73/127 (57%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL+RRHAKW+EF+E+FPYV+K+KKG+EN++ADALSRRYA++S L+ + G E IK+ Y
Sbjct: 1119 QAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQY 1178
Query: 181 VNDNDFTTV-C*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
+D+DF V E ++KF +GF+FR +KLCIP SSVR LL+++AHG GLMGHFG
Sbjct: 1179 AHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFG 1238
Query: 358 VQKTRSV 378
V+KT +
Sbjct: 1239 VKKTEDI 1245
Score = 83.2 bits (204), Expect(3) = e-101
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V +IVSD+D FLS+ W+ LW K+GTK LFSTTCHPQTDGQTEV
Sbjct: 1345 EIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEV 1396
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 179 bits (454), Expect(3) = e-100
Identities = 81/105 (77%), Positives = 92/105 (87%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K ++L +HFFWPKM+RDVER A+C TC+KAK + PHGLY PLPVPS PW DISMDFV
Sbjct: 1241 KTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFV 1300
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTKKG+DSIFVVVDRFSKMAHFIPCHK +DAT++ADLFFRE
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFRE 1345
Score = 151 bits (381), Expect(3) = e-100
Identities = 73/127 (57%), Positives = 99/127 (77%), Gaps = 1/127 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL+RRHAKW+EF+E+FPYV+K+KKG+EN++ADALSRRYA++S L+ + G E IK+ Y
Sbjct: 1119 QAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQY 1178
Query: 181 VNDNDFTTV-C*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
+D+DF V E ++KF +GF+FR +KLCIP SSVR LL+++AHG GLMGHFG
Sbjct: 1179 AHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFG 1238
Query: 358 VQKTRSV 378
V+KT +
Sbjct: 1239 VKKTEDI 1245
Score = 84.7 bits (208), Expect(3) = e-100
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V +IVSD+D FLS+ W+ LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 1345 EIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1396
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 179 bits (454), Expect(3) = e-100
Identities = 81/105 (77%), Positives = 91/105 (86%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K ++L HFFWPKM+RDVER A+C TC++AKS+ PHGLY PLPVPS PW DISMDFV
Sbjct: 1257 KTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1316
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTKKG+DSIFVVVDRFSKMAHFIPCHK +DA N+ADLFFRE
Sbjct: 1317 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFRE 1361
Score = 153 bits (386), Expect(3) = e-100
Identities = 76/130 (58%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL+RRHAKW+EF+ETFPYV+K+KKG+EN++ADALSRRY ++S L+ + G E IKD Y
Sbjct: 1135 QAKLNRRHAKWVEFIETFPYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLETIKDQY 1194
Query: 181 VNDNDFTTVC-*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
V+D +F V E ++KF DGF+FR +KLCIP SSVR LL+++AHG GLMGHFG
Sbjct: 1195 VHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1254
Query: 358 VQKTRSVTRT 387
V+KT + T
Sbjct: 1255 VKKTEDILAT 1264
Score = 82.0 bits (201), Expect(3) = e-100
Identities = 36/52 (69%), Positives = 42/52 (80%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E +RLH V +IVSD+D FLS+ W+ LW K+G KLLFSTTCHPQTDGQTEV
Sbjct: 1361 EIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEV 1412
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 177 bits (450), Expect(3) = e-100
Identities = 80/105 (76%), Positives = 92/105 (87%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K ++L HFFWPKM+RDV R+ A+C TC+KAKS+ PHGLY PLPVPS PW DISMDFV
Sbjct: 1216 KTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFV 1275
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRT+KG+DS+FVVVDRFSKMAHFIPCHK +DAT+IADLFFRE
Sbjct: 1276 LGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFRE 1320
Score = 150 bits (380), Expect(3) = e-100
Identities = 74/127 (58%), Positives = 98/127 (77%), Gaps = 1/127 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKL+RRHAKW+EF+E+FPYV+K+KKG+ENI+ADALSRRY L++ L+ + G E IKD Y
Sbjct: 1094 QGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQY 1153
Query: 181 VNDNDFTTV-C*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
V+D DF V + ++K+ DGF+FR +KLCIP SSVR LL+++AHG GLMGHFG
Sbjct: 1154 VHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1213
Query: 358 VQKTRSV 378
+KT +
Sbjct: 1214 AKKTEDI 1220
Score = 84.7 bits (208), Expect(3) = e-100
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V +IVSD+D FLS+ W+ LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 1320 EIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1371
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 179 bits (455), Expect(3) = 1e-99
Identities = 82/105 (78%), Positives = 91/105 (86%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K +VL HFFWP+M+RDVER A+C TC+KAKS+ PHGLY PLPVPS PW DISMDFV
Sbjct: 1272 KMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1331
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTKKG+DSIFVVVDRFSKMAHFIPCHK +DA N+ADLFFRE
Sbjct: 1332 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFRE 1376
Score = 149 bits (375), Expect(3) = 1e-99
Identities = 74/130 (56%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL+RRHAKW+EF+ETFPYV+K+KKG++N++ADALSRRY ++S L+ + G E IKD Y
Sbjct: 1150 QAKLNRRHAKWVEFIETFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQY 1209
Query: 181 VNDNDFTTVC-*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
V+D DF V E ++KF +GF+FR +KLCIP SS+R LL+++AHG GLMGHFG
Sbjct: 1210 VHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFG 1269
Query: 358 VQKTRSVTRT 387
V+K V T
Sbjct: 1270 VKKMEDVLAT 1279
Score = 84.0 bits (206), Expect(3) = 1e-99
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E +RLH V +IVSD+D FLS+ W+ LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 1376 EIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEV 1427
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 179 bits (454), Expect(3) = 2e-99
Identities = 81/105 (77%), Positives = 92/105 (87%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K ++L +H FWPKM+RDVER A+C TC+KAKS+ PHGLY PLPVPS PW DISMDFV
Sbjct: 1137 KTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1196
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTKKG+DSIFVVVDRFSKMAHFIPCHK +DAT++ADLFFRE
Sbjct: 1197 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFRE 1241
Score = 147 bits (372), Expect(3) = 2e-99
Identities = 71/127 (55%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL+RRHAKW+EF+E+FPYV+K+KKG+EN++ DALSRRYA++S L+ + G E IK+ Y
Sbjct: 1015 QAKLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAMLSQLDFKIFGLETIKEQY 1074
Query: 181 VNDNDFTTV-C*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
+D+DF V E ++KF +GF+FR +KLCIP SSV LL+++AHG GLMGHFG
Sbjct: 1075 AHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFG 1134
Query: 358 VQKTRSV 378
V+KT +
Sbjct: 1135 VKKTEDI 1141
Score = 84.7 bits (208), Expect(3) = 2e-99
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V +IVSD+D FLS+ W+ LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 1241 EIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1292
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 179 bits (455), Expect(3) = 5e-99
Identities = 82/105 (78%), Positives = 91/105 (86%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K +VL HFFWP+M+RDVER A+C TC+KAKS+ PHGLY PLPVPS PW DISMDFV
Sbjct: 1269 KMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1328
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTKKG+DSIFVVVDRFSKMAHFIPCHK +DA N+ADLFFRE
Sbjct: 1329 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFRE 1373
Score = 147 bits (370), Expect(3) = 5e-99
Identities = 74/130 (56%), Positives = 97/130 (74%), Gaps = 1/130 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q KL+RRHAKW+EF+ETFPYV+K KKG++N++ADALSRRY ++S L+ + G E IKD Y
Sbjct: 1147 QAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQY 1206
Query: 181 VNDNDFTTVC-*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
V+D DF V E ++KF +GF+FR +KLCIP SS+R LL+++AHG GLMGHFG
Sbjct: 1207 VHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFG 1266
Query: 358 VQKTRSVTRT 387
V+K V T
Sbjct: 1267 VKKMEDVLAT 1276
Score = 84.0 bits (206), Expect(3) = 5e-99
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E +RLH V +IVSD+D FLS+ W+ LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 1373 EIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEV 1424
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 173 bits (439), Expect(3) = 2e-98
Identities = 78/105 (74%), Positives = 91/105 (86%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K ++L HFFWP+M+RDV R A+C TC+KAKS+ PHGLY PLPVP+ PW DISMDFV
Sbjct: 1213 KTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFV 1272
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTK+G+DSIFVVVDRFSKMAHFIPCHK +DA++IADLFFRE
Sbjct: 1273 LGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFRE 1317
Score = 150 bits (378), Expect(3) = 2e-98
Identities = 74/127 (58%), Positives = 97/127 (76%), Gaps = 1/127 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
QGKL+RRHAKW+EF+E+FPYV+K+KKG+ENI+ADALSRRY L++ L+ + G E IKD Y
Sbjct: 1091 QGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQY 1150
Query: 181 VNDNDFTTV-C*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
+D DF V + ++KF DGF+FR +KLCIP SSVR LL+++AHG GLMGHFG
Sbjct: 1151 AHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFG 1210
Query: 358 VQKTRSV 378
+KT +
Sbjct: 1211 AKKTHDI 1217
Score = 84.7 bits (208), Expect(3) = 2e-98
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V +IVSD+D FLS+ W+ LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 1317 EIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1368
Score = 91.3 bits (225), Expect(2) = 1e-27
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +2
Query: 377 LQEHFFWPKMKRDVERICAKCITCRKAKSKSM-PHGLYTPLPVPSEPWVDISMDFVLGLP 553
L+E ++W MKR++ A C C++ K++ P GL PL VP W +I MDF+ GLP
Sbjct: 2039 LKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLP 2098
Query: 554 RTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRESTS 685
+T+ G DSI+VVVDR +K+A FIP +A+L+F S
Sbjct: 2099 KTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVS 2142
Score = 59.3 bits (142), Expect(2) = 1e-27
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = +3
Query: 678 VRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTE 824
V LH V + IVSD++ F S+ WK L ++GT+L FST HPQTDGQTE
Sbjct: 2141 VSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTE 2189
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 179 bits (454), Expect(3) = 2e-98
Identities = 81/105 (77%), Positives = 92/105 (87%)
Frame = +2
Query: 362 KRLEVLQEHFFWPKMKRDVERICAKCITCRKAKSKSMPHGLYTPLPVPSEPWVDISMDFV 541
K ++L +HFFWPK +RDVER A+C TC+KAKS+ PHGLY PLPVPS PW DISMDFV
Sbjct: 1241 KMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFV 1300
Query: 542 LGLPRTKKGKDSIFVVVDRFSKMAHFIPCHKINDATNIADLFFRE 676
LGLPRTKKG+DSIFVVVDRFSKMAHFIPCHK +DAT++ADLFFRE
Sbjct: 1301 LGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFRE 1345
Score = 144 bits (363), Expect(3) = 2e-98
Identities = 70/127 (55%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Frame = +1
Query: 1 QGKLSRRHAKWMEFLETFPYVVKYKKGEENIVADALSRRYALVSNLNTWLLGFEFIKDLY 180
Q K +RRHAKW+EF+E+FPYV+K+KKG+EN++ADALSRRYA++S L+ + G E IK+ Y
Sbjct: 1119 QAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQY 1178
Query: 181 VNDNDFTTV-C*A*EKIAFDKFYKVDGFLFRESKLCIPNSSVRKLLVRKAHG*GLMGHFG 357
+D+DF V E ++KF +GF+FR +KLCIP SSV LL+++AHG GLMGHFG
Sbjct: 1179 AHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFG 1238
Query: 358 VQKTRSV 378
V+K +
Sbjct: 1239 VKKMEDI 1245
Score = 84.7 bits (208), Expect(3) = 2e-98
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +3
Query: 672 ERVRLHNVLRSIVSDKDVTFLSYSWKVLWGKMGTKLLFSTTCHPQTDGQTEV 827
E VRLH V +IVSD+D FLS+ W+ LW K+GTKLLFSTTCHPQTDGQTEV
Sbjct: 1345 EIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEV 1396