BLASTX nr result
ID: Cocculus23_contig00022455
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00022455
(204 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 92 6e-17
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 92 6e-17
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera] 92 6e-17
gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza] 91 1e-16
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 90 4e-16
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 89 6e-16
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 89 6e-16
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 89 8e-16
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 87 3e-15
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 86 5e-15
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 86 7e-15
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 85 9e-15
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana] 85 9e-15
gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana] 85 9e-15
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 84 2e-14
ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutr... 83 3e-14
gb|EYU30717.1| hypothetical protein MIMGU_mgv1a001145mg [Mimulus... 83 5e-14
ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Ar... 82 6e-14
gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana] 82 6e-14
ref|XP_007152980.1| hypothetical protein PHAVU_004G1764002g, par... 82 1e-13
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 92.4 bits (228), Expect = 6e-17
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3
Query: 3 TTRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGK 182
TTRF S++IG+AAD+WL MDRLLTL ++C+ EK CLK K+L+L DIYYDALDAPK+G
Sbjct: 689 TTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGM 748
Query: 183 KVLVPDE 203
KV V E
Sbjct: 749 KVNVSKE 755
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 92.4 bits (228), Expect = 6e-17
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3
Query: 3 TTRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGK 182
TTRF S++IG+AAD+WL MDRLLTL ++C+ EK CLK K+L+L DIYYDALDAPK+G
Sbjct: 703 TTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGM 762
Query: 183 KVLVPDE 203
KV V E
Sbjct: 763 KVNVSKE 769
>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 92.4 bits (228), Expect = 6e-17
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3
Query: 3 TTRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGK 182
TTRF S++IG+AAD+WL MDRLLTL ++C+ EK CLK K+L+L DIYYDALDAPK+G
Sbjct: 972 TTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGM 1031
Query: 183 KVLVPDE 203
KV V E
Sbjct: 1032 KVNVSKE 1038
>gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]
Length = 898
Score = 91.3 bits (225), Expect = 1e-16
Identities = 43/61 (70%), Positives = 53/61 (86%)
Frame = +3
Query: 21 SNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKKVLVPD 200
S ++G AADSWL+ MDRLLTLG++ A EKN LK K++KLVDIYYDALDAPK+GKK+ VPD
Sbjct: 760 SYNMGTAADSWLTYMDRLLTLGDDRAAEKNSLKTKMIKLVDIYYDALDAPKSGKKINVPD 819
Query: 201 E 203
+
Sbjct: 820 D 820
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 89.7 bits (221), Expect = 4e-16
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +3
Query: 12 FNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKKVL 191
F+ SN IG+AADSWL++MDRLL LG+E A EK +K+K+LKL+DIYYDALDAPK G KV
Sbjct: 746 FHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVY 805
Query: 192 VPDE 203
+P+E
Sbjct: 806 LPNE 809
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 89.0 bits (219), Expect = 6e-16
Identities = 42/65 (64%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Frame = +3
Query: 9 RFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKT-GKK 185
RF S+++GVAADSWL++MDRLLTLGN+CA E C+KE I L+DIYYDALDAPK G++
Sbjct: 638 RFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRR 697
Query: 186 VLVPD 200
+ VP+
Sbjct: 698 IEVPE 702
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 89.0 bits (219), Expect = 6e-16
Identities = 42/65 (64%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Frame = +3
Query: 9 RFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKT-GKK 185
RF S+++GVAADSWL++MDRLLTLGN+CA E C+KE I L+DIYYDALDAPK G++
Sbjct: 660 RFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRR 719
Query: 186 VLVPD 200
+ VP+
Sbjct: 720 IEVPE 724
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/66 (63%), Positives = 53/66 (80%)
Frame = +3
Query: 6 TRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKK 185
+RF+ S + AADSWL MDRLLTLG+ECA EK CL +K+LKL D+YY+A+DAPK+GKK
Sbjct: 752 SRFHPSIAKCAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPKSGKK 811
Query: 186 VLVPDE 203
V VP +
Sbjct: 812 VEVPKD 817
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 86.7 bits (213), Expect = 3e-15
Identities = 41/64 (64%), Positives = 53/64 (82%)
Frame = +3
Query: 12 FNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKKVL 191
F+ SN IG+AADSWL++MDR L LG+E A EK +K+K+L+L+DIYYDALDAPK G KV
Sbjct: 749 FHASNVIGMAADSWLTIMDRFLILGDESADEKAEMKQKMLELIDIYYDALDAPKKGAKVY 808
Query: 192 VPDE 203
+P+E
Sbjct: 809 LPNE 812
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 85.9 bits (211), Expect = 5e-15
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +3
Query: 9 RFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKKV 188
RF+ SN IG+AADSWL++MDR LTLG+E A EK +K K+L L+DIYYDALDA K G KV
Sbjct: 753 RFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVKV 812
Query: 189 LVPD 200
+PD
Sbjct: 813 SLPD 816
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 85.5 bits (210), Expect = 7e-15
Identities = 41/65 (63%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Frame = +3
Query: 9 RFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKT-GKK 185
RF S ++GVAADSWL++MDRLLTLGN+C E C+K+ I L+DIYYDALDAPK G+K
Sbjct: 638 RFQPSFTVGVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRK 697
Query: 186 VLVPD 200
+ VP+
Sbjct: 698 IEVPE 702
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 85.1 bits (209), Expect = 9e-15
Identities = 40/67 (59%), Positives = 54/67 (80%)
Frame = +3
Query: 3 TTRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGK 182
T F+ SN IG+AADSWL++MDR L LG++ A EK +K+K+L+L+DIYYDALDAPK G
Sbjct: 739 TAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGD 798
Query: 183 KVLVPDE 203
KV +P++
Sbjct: 799 KVYLPNK 805
>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 85.1 bits (209), Expect = 9e-15
Identities = 40/67 (59%), Positives = 54/67 (80%)
Frame = +3
Query: 3 TTRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGK 182
T F+ SN IG+AADSWL++MDR L LG++ A EK +K+K+L+L+DIYYDALDAPK G
Sbjct: 101 TAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGD 160
Query: 183 KVLVPDE 203
KV +P++
Sbjct: 161 KVYLPNK 167
>gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 85.1 bits (209), Expect = 9e-15
Identities = 40/67 (59%), Positives = 54/67 (80%)
Frame = +3
Query: 3 TTRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGK 182
T F+ SN IG+AADSWL++MDR L LG++ A EK +K+K+L+L+DIYYDALDAPK G
Sbjct: 659 TAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGD 718
Query: 183 KVLVPDE 203
KV +P++
Sbjct: 719 KVYLPNK 725
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 84.0 bits (206), Expect = 2e-14
Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 3/69 (4%)
Frame = +3
Query: 6 TRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCL--KEKILKLVDIYYDALDAPKT- 176
TRF S++IG+AADSW++LMDRLLTL N+ EK L KE ILKL+DIYY+ALDAPK
Sbjct: 756 TRFQSSSAIGIAADSWMALMDRLLTLRNDITKEKEVLQVKENILKLIDIYYEALDAPKKG 815
Query: 177 GKKVLVPDE 203
G K+ VP++
Sbjct: 816 GGKIQVPED 824
>ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutrema salsugineum]
gi|557110063|gb|ESQ50360.1| hypothetical protein
EUTSA_v10001896mg [Eutrema salsugineum]
Length = 988
Score = 83.2 bits (204), Expect = 3e-14
Identities = 39/63 (61%), Positives = 48/63 (76%)
Frame = +3
Query: 9 RFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKKV 188
RF+ N +G AADSWL++MD LTLG+E EKN K+KILK +D+YYDALDAPK G KV
Sbjct: 722 RFHSRNVVGAAADSWLTIMDLFLTLGDEKVKEKNGRKKKILKAIDVYYDALDAPKKGAKV 781
Query: 189 LVP 197
+P
Sbjct: 782 NLP 784
>gb|EYU30717.1| hypothetical protein MIMGU_mgv1a001145mg [Mimulus guttatus]
Length = 878
Score = 82.8 bits (203), Expect = 5e-14
Identities = 39/61 (63%), Positives = 50/61 (81%)
Frame = +3
Query: 21 SNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKKVLVPD 200
S ++ AADSWL+ MDRLLTLG++ EK L +K+++LVDIYYDALDAPK+GKKV VP+
Sbjct: 636 SFNMATAADSWLTFMDRLLTLGDDRTAEKKSLMKKMIRLVDIYYDALDAPKSGKKVKVPE 695
Query: 201 E 203
E
Sbjct: 696 E 696
>ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4 gi|330251849|gb|AEC06943.1| RNA-dependent RNA
polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 82.4 bits (202), Expect = 6e-14
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = +3
Query: 6 TRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKK 185
T F+ S+ IG AADSWL++MDR LTLG+E EK +K+K+LKL DIYYDA+DAPKTG +
Sbjct: 740 TGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTE 799
Query: 186 VLVP 197
V +P
Sbjct: 800 VNLP 803
>gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
Length = 905
Score = 82.4 bits (202), Expect = 6e-14
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = +3
Query: 6 TRFNQSNSIGVAADSWLSLMDRLLTLGNECAMEKNCLKEKILKLVDIYYDALDAPKTGKK 185
T F+ S+ IG AADSWL++MDR LTLG+E EK +K+K+LKL DIYYDA+DAPKTG +
Sbjct: 736 TGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTE 795
Query: 186 VLVP 197
V +P
Sbjct: 796 VNLP 799
>ref|XP_007152980.1| hypothetical protein PHAVU_004G1764002g, partial [Phaseolus
vulgaris] gi|561026289|gb|ESW24974.1| hypothetical
protein PHAVU_004G1764002g, partial [Phaseolus vulgaris]
Length = 111
Score = 81.6 bits (200), Expect = 1e-13
Identities = 40/59 (67%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Frame = +3
Query: 9 RFNQSNSIGVAADSWLSLMDRLLTLGNECAM--EKNCLKEKILKLVDIYYDALDAPKTG 179
RF SN+ GVAADSW++LMDRLLTL N+C EK +KE ILKL+DIYY+ALDAPK G
Sbjct: 50 RFQPSNATGVAADSWMALMDRLLTLKNDCTQENEKKHVKENILKLIDIYYEALDAPKKG 108