BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00022148
         (908 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22720.3| unnamed protein product [Vitis vinifera]              257   4e-66
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   240   5e-61
ref|XP_006490401.1| PREDICTED: DNA-directed RNA polymerase III s...   210   7e-52
ref|XP_006490400.1| PREDICTED: DNA-directed RNA polymerase III s...   210   7e-52
ref|XP_006421933.1| hypothetical protein CICLE_v10004721mg [Citr...   210   7e-52
ref|XP_006421932.1| hypothetical protein CICLE_v10004721mg [Citr...   210   7e-52
ref|XP_006421931.1| hypothetical protein CICLE_v10004721mg [Citr...   210   7e-52
emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]   210   7e-52
ref|XP_007038705.1| RNA polymerase III subunit RPC82 family prot...   206   8e-51
ref|XP_007038704.1| RNA polymerase III subunit RPC82 family prot...   206   8e-51
emb|CBI26210.3| unnamed protein product [Vitis vinifera]              199   1e-48
ref|XP_004240730.1| PREDICTED: DNA-directed RNA polymerase III s...   196   1e-47
emb|CAN75989.1| hypothetical protein VITISV_012194 [Vitis vinifera]   192   1e-46
ref|XP_006374620.1| hypothetical protein POPTR_0015s13040g [Popu...   188   2e-45
ref|XP_002321920.2| RNA polymerase 3 subunit RPC82 family protei...   188   2e-45
gb|EXC19135.1| DNA-directed RNA polymerase III subunit RPC3 [Mor...   186   1e-44
ref|XP_006363319.1| PREDICTED: DNA-directed RNA polymerase III s...   186   1e-44
ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polyp...   184   5e-44
ref|XP_007219003.1| hypothetical protein PRUPE_ppa004195mg [Prun...   176   1e-41
tpg|DAA58620.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea m...   171   4e-40

>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  257 bits (657), Expect = 4e-66
 Identities = 135/244 (55%), Positives = 169/244 (69%), Gaps = 1/244 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M  Q+G++LA+ LIS+HFG LVAKVC CLL KGTLTL+ V R+TELP QQ K+C+LVLIQ
Sbjct: 1   MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 360 HNCVQAFAIEKE-GFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNCVQAFAI++E GFG A RV+TQY  ++ NILHR+RF+KFLAIVS              
Sbjct: 61  HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   EQI+ RA S Q+EG  + Q+ALR +F++LV +H+VERCP SEPFLAP  EE 
Sbjct: 121 LQHGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVNMPNPM 896
               +RG KSAKL    +TIEQRA+ AAAP++A+RF +I + GTDV        + PN  
Sbjct: 181 TPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVD-------DSPNVT 233

Query: 897 RGEK 908
            GEK
Sbjct: 234 AGEK 237


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
           vinifera]
          Length = 511

 Score =  240 bits (613), Expect = 5e-61
 Identities = 126/225 (56%), Positives = 158/225 (70%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M  Q+G++LA+ LIS+HFG LVAKVC CLL KGTLTL+ V R+TELP QQ K+C+LVLIQ
Sbjct: 1   MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 360 HNCVQAFAIEKEGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXXX 539
           HNCVQAFAI++E    A RV+TQY  ++ NILHR+RF+KFLAIVS               
Sbjct: 61  HNCVQAFAIQQE----APRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLL 116

Query: 540 XXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEETP 719
                  EQI+ RA S Q E   + Q+ALR +F++LV +H+VERCP SEPFLAP  EE  
Sbjct: 117 QHGRLTLEQILDRAKSNQRE--PVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEET 174

Query: 720 STGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDV 854
              +RG KSAKL    +TIEQRA+ AAAP++A+RF +I + GTDV
Sbjct: 175 PARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDV 219


>ref|XP_006490401.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
           isoform X3 [Citrus sinensis]
          Length = 444

 Score =  210 bits (534), Expect = 7e-52
 Identities = 113/244 (46%), Positives = 152/244 (62%), Gaps = 1/244 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M+ ++G K A+ +I+ HFG+LVAKVC CLL KG LT  +V RYTEL  +Q KN LLVLIQ
Sbjct: 1   MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60

Query: 360 HNCVQAFAIEK-EGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
            NCVQAF  E+ +GF    +  TQY V+++NILHR+RF+KFL I+S              
Sbjct: 61  QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +Q+  RA S + EG  ++ ++LR   V+LV +HYVERCP SEP L P  EE 
Sbjct: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVNMPNPM 896
               ++G+KSAK  G  ETIEQ+ ++AA P+EA RF ++T++ +DV    K   N  N  
Sbjct: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK---NSNNVT 237

Query: 897 RGEK 908
            GEK
Sbjct: 238 PGEK 241


>ref|XP_006490400.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
           isoform X2 [Citrus sinensis]
          Length = 512

 Score =  210 bits (534), Expect = 7e-52
 Identities = 113/244 (46%), Positives = 152/244 (62%), Gaps = 1/244 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M+ ++G K A+ +I+ HFG+LVAKVC CLL KG LT  +V RYTEL  +Q KN LLVLIQ
Sbjct: 1   MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60

Query: 360 HNCVQAFAIEK-EGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
            NCVQAF  E+ +GF    +  TQY V+++NILHR+RF+KFL I+S              
Sbjct: 61  QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +Q+  RA S + EG  ++ ++LR   V+LV +HYVERCP SEP L P  EE 
Sbjct: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVNMPNPM 896
               ++G+KSAK  G  ETIEQ+ ++AA P+EA RF ++T++ +DV    K   N  N  
Sbjct: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK---NSNNVT 237

Query: 897 RGEK 908
            GEK
Sbjct: 238 PGEK 241


>ref|XP_006421933.1| hypothetical protein CICLE_v10004721mg [Citrus clementina]
           gi|568874593|ref|XP_006490399.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC3-like isoform X1 [Citrus
           sinensis] gi|557523806|gb|ESR35173.1| hypothetical
           protein CICLE_v10004721mg [Citrus clementina]
          Length = 527

 Score =  210 bits (534), Expect = 7e-52
 Identities = 113/244 (46%), Positives = 152/244 (62%), Gaps = 1/244 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M+ ++G K A+ +I+ HFG+LVAKVC CLL KG LT  +V RYTEL  +Q KN LLVLIQ
Sbjct: 1   MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60

Query: 360 HNCVQAFAIEK-EGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
            NCVQAF  E+ +GF    +  TQY V+++NILHR+RF+KFL I+S              
Sbjct: 61  QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +Q+  RA S + EG  ++ ++LR   V+LV +HYVERCP SEP L P  EE 
Sbjct: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVNMPNPM 896
               ++G+KSAK  G  ETIEQ+ ++AA P+EA RF ++T++ +DV    K   N  N  
Sbjct: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK---NSNNVT 237

Query: 897 RGEK 908
            GEK
Sbjct: 238 PGEK 241


>ref|XP_006421932.1| hypothetical protein CICLE_v10004721mg [Citrus clementina]
           gi|557523805|gb|ESR35172.1| hypothetical protein
           CICLE_v10004721mg [Citrus clementina]
          Length = 433

 Score =  210 bits (534), Expect = 7e-52
 Identities = 113/244 (46%), Positives = 152/244 (62%), Gaps = 1/244 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M+ ++G K A+ +I+ HFG+LVAKVC CLL KG LT  +V RYTEL  +Q KN LLVLIQ
Sbjct: 1   MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60

Query: 360 HNCVQAFAIEK-EGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
            NCVQAF  E+ +GF    +  TQY V+++NILHR+RF+KFL I+S              
Sbjct: 61  QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +Q+  RA S + EG  ++ ++LR   V+LV +HYVERCP SEP L P  EE 
Sbjct: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVNMPNPM 896
               ++G+KSAK  G  ETIEQ+ ++AA P+EA RF ++T++ +DV    K   N  N  
Sbjct: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK---NSNNVT 237

Query: 897 RGEK 908
            GEK
Sbjct: 238 PGEK 241


>ref|XP_006421931.1| hypothetical protein CICLE_v10004721mg [Citrus clementina]
           gi|557523804|gb|ESR35171.1| hypothetical protein
           CICLE_v10004721mg [Citrus clementina]
          Length = 322

 Score =  210 bits (534), Expect = 7e-52
 Identities = 113/244 (46%), Positives = 152/244 (62%), Gaps = 1/244 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M+ ++G K A+ +I+ HFG+LVAKVC CLL KG LT  +V RYTEL  +Q KN LLVLIQ
Sbjct: 1   MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60

Query: 360 HNCVQAFAIEK-EGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
            NCVQAF  E+ +GF    +  TQY V+++NILHR+RF+KFL I+S              
Sbjct: 61  QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +Q+  RA S + EG  ++ ++LR   V+LV +HYVERCP SEP L P  EE 
Sbjct: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVNMPNPM 896
               ++G+KSAK  G  ETIEQ+ ++AA P+EA RF ++T++ +DV    K   N  N  
Sbjct: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK---NSNNVT 237

Query: 897 RGEK 908
            GEK
Sbjct: 238 PGEK 241


>emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]
          Length = 721

 Score =  210 bits (534), Expect = 7e-52
 Identities = 110/195 (56%), Positives = 135/195 (69%), Gaps = 1/195 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M  Q+G++LA+ LIS+HFG LVAKVC CLL KGT TL+ V R+TELP QQ K+C+LVLIQ
Sbjct: 1   MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTXTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 360 HNCVQAFAIEKE-GFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNCVQAFAI++E GFG A RV+TQY  ++ NILHR+RF+KFLAIVS              
Sbjct: 61  HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   EQI+ RA S Q E   + Q+ALR +F++LV +H+VERCP SEPFLAP  EE 
Sbjct: 121 LQHGRLTLEQILDRAKSNQRE--PVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 178

Query: 717 PSTGRRGTKSAKLTG 761
               +RG KSAK  G
Sbjct: 179 TPARKRGAKSAKQWG 193


>ref|XP_007038705.1| RNA polymerase III subunit RPC82 family protein, putative isoform 2
           [Theobroma cacao] gi|508775950|gb|EOY23206.1| RNA
           polymerase III subunit RPC82 family protein, putative
           isoform 2 [Theobroma cacao]
          Length = 463

 Score =  206 bits (525), Expect = 8e-51
 Identities = 110/220 (50%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           MV QHGIK A+ LI+ HFG+LVAKVC CLL KG LTL  + R+TEL S Q KN LLVLIQ
Sbjct: 1   MVTQHGIKYAVLLITTHFGDLVAKVCECLLRKGPLTLQAIVRFTELTSSQVKNSLLVLIQ 60

Query: 360 HNCVQAFAIEKEG-FGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNCVQAF +E+ G  G  A++ +QY  ++ NI+HR RF KFL IVS              
Sbjct: 61  HNCVQAFILEQPGSHGDGAKLNSQYIALFNNIIHRWRFPKFLTIVSQKLDKQCVELIEAL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +Q+  RA S QNEG  +  +A+R  F++L+N+H+VERCP +EP L    EE 
Sbjct: 121 LLHGRLTLKQMSDRAKSAQNEGDDVILDAVREAFIKLLNAHFVERCPAAEPVLTKPTEEE 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIIT 836
            S  +R  KSAK+    ET+EQR ++AA P EA RFL++T
Sbjct: 181 TSARKRVPKSAKILEGKETLEQRVLEAATPSEALRFLLVT 220


>ref|XP_007038704.1| RNA polymerase III subunit RPC82 family protein, putative isoform 1
           [Theobroma cacao] gi|508775949|gb|EOY23205.1| RNA
           polymerase III subunit RPC82 family protein, putative
           isoform 1 [Theobroma cacao]
          Length = 523

 Score =  206 bits (525), Expect = 8e-51
 Identities = 110/220 (50%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           MV QHGIK A+ LI+ HFG+LVAKVC CLL KG LTL  + R+TEL S Q KN LLVLIQ
Sbjct: 1   MVTQHGIKYAVLLITTHFGDLVAKVCECLLRKGPLTLQAIVRFTELTSSQVKNSLLVLIQ 60

Query: 360 HNCVQAFAIEKEG-FGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNCVQAF +E+ G  G  A++ +QY  ++ NI+HR RF KFL IVS              
Sbjct: 61  HNCVQAFILEQPGSHGDGAKLNSQYIALFNNIIHRWRFPKFLTIVSQKLDKQCVELIEAL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +Q+  RA S QNEG  +  +A+R  F++L+N+H+VERCP +EP L    EE 
Sbjct: 121 LLHGRLTLKQMSDRAKSAQNEGDDVILDAVREAFIKLLNAHFVERCPAAEPVLTKPTEEE 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIIT 836
            S  +R  KSAK+    ET+EQR ++AA P EA RFL++T
Sbjct: 181 TSARKRVPKSAKILEGKETLEQRVLEAATPSEALRFLLVT 220


>emb|CBI26210.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  199 bits (506), Expect = 1e-48
 Identities = 113/244 (46%), Positives = 141/244 (57%), Gaps = 1/244 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M  ++GIKLA+ LIS  FG+  AKVC CLL KGTL L D+ R  +L  QQ K  L VLIQ
Sbjct: 1   MTPEYGIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQ 60

Query: 360 HNCVQAFAIEKE-GFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNCVQAFA+E E G G    V+TQY ++++NILHR+RF K LAIVS              
Sbjct: 61  HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAF 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +QI+ R  S QNEG    Q+ALR +F +LVN+HYVERCP  +PFL P DEE 
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEK 180

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVNMPNPM 896
               +    SAK     E  EQ  +  A P +A+ F +ITD   D+  D   G N P  +
Sbjct: 181 TPARKHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIG-NPPGVV 239

Query: 897 RGEK 908
            G+K
Sbjct: 240 IGKK 243


>ref|XP_004240730.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc3-like
           [Solanum lycopersicum]
          Length = 525

 Score =  196 bits (497), Expect = 1e-47
 Identities = 115/259 (44%), Positives = 154/259 (59%), Gaps = 16/259 (6%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           MV  HGIKLA+ LIS++FGEL AKVC CLL +GT TL  V   TEL  +  KNCLLVLI 
Sbjct: 1   MVSPHGIKLAVYLISSYFGELNAKVCDCLLRRGTQTLHQVVSSTELSRKNVKNCLLVLIH 60

Query: 360 HNCVQAFAIEKE-GFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNCVQAFAI +  GFG  A++ITQY  +++NI+H+LRF KF+ IVS              
Sbjct: 61  HNCVQAFAIRQPGGFGEEAKIITQYMALFDNIIHKLRFPKFIEIVSEELGKECEEILEWL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                    QI+++      +G S + +A + +F RLVN+ +VERCP  +P L P  EE 
Sbjct: 121 LQHGRLSLSQIIVKYKQASKQGDS-SADAAQDSFNRLVNARFVERCPAPDPLLEPPAEEE 179

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDV------TSDAKTGV 878
            +  +RG KSAK+  +A+T+EQ+A+ AAAP+E+ RFL+       V      T+D K G+
Sbjct: 180 TAAKKRGAKSAKI--QAQTMEQQALAAAAPMESMRFLVENIWNDSVEKADKRTTDVKCGM 237

Query: 879 ---------NMPNPMRGEK 908
                    N  +P  GEK
Sbjct: 238 KRKQEDLESNTKDPATGEK 256


>emb|CAN75989.1| hypothetical protein VITISV_012194 [Vitis vinifera]
          Length = 549

 Score =  192 bits (489), Expect = 1e-46
 Identities = 110/240 (45%), Positives = 139/240 (57%), Gaps = 8/240 (3%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M  ++GIKLA+ LIS  FG+  AKVC CL+ KGTL L D+ R T+L  QQ K  L VLIQ
Sbjct: 1   MTPEYGIKLAVHLISTDFGDHAAKVCDCLIRKGTLALDDIVRTTKLSPQQVKTYLKVLIQ 60

Query: 360 HNCVQAFAIEKE-GFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNCVQAFA+E E G G    V+TQY ++++NILHR+RF K LAIVS              
Sbjct: 61  HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEKLFEAF 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                   +QI+ R  S QNEG    Q+ALR +F +LVN+HYVERCP  +PFL P DEE 
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEK 180

Query: 717 PSTGRRGTKSAK-LTGRAETI------EQRAMKAAAPLEAERFLIITDIGTDVTSDAKTG 875
               +    SAK LT   + +      EQ  +  A P +A+ F +ITD   D+  D   G
Sbjct: 181 TPARKHDANSAKALTDSCQAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIG 240


>ref|XP_006374620.1| hypothetical protein POPTR_0015s13040g [Populus trichocarpa]
           gi|550322613|gb|ERP52417.1| hypothetical protein
           POPTR_0015s13040g [Populus trichocarpa]
          Length = 437

 Score =  188 bits (478), Expect = 2e-45
 Identities = 109/228 (47%), Positives = 138/228 (60%), Gaps = 4/228 (1%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           MV Q+GIK A+ +I+ HFG LVAKVC CLL KG L L ++ RYTEL     +NCLLVLIQ
Sbjct: 1   MVSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQ 60

Query: 360 HNCVQAFAIEKE-GFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNC+Q F +E+E GFG   +V + Y V+++N+LHR+RFSKF+AIVS              
Sbjct: 61  HNCLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLA-PTDEE 713
                   EQI      + + G     EAL+ N  +LV + YVERCP SEPFLA P++EE
Sbjct: 121 LQHGRLSSEQIFDGFRDRSSSG---GMEALQENMHKLVMARYVERCPISEPFLALPSEEE 177

Query: 714 TPSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFL--IITDIGTD 851
                RRG KSAK     ET+EQR + AA P E  RF   +  +IG D
Sbjct: 178 AAPVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGAD 225


>ref|XP_002321920.2| RNA polymerase 3 subunit RPC82 family protein [Populus trichocarpa]
           gi|550322612|gb|EEF06047.2| RNA polymerase 3 subunit
           RPC82 family protein [Populus trichocarpa]
          Length = 520

 Score =  188 bits (478), Expect = 2e-45
 Identities = 109/228 (47%), Positives = 138/228 (60%), Gaps = 4/228 (1%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           MV Q+GIK A+ +I+ HFG LVAKVC CLL KG L L ++ RYTEL     +NCLLVLIQ
Sbjct: 1   MVSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQ 60

Query: 360 HNCVQAFAIEKE-GFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNC+Q F +E+E GFG   +V + Y V+++N+LHR+RFSKF+AIVS              
Sbjct: 61  HNCLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLA-PTDEE 713
                   EQI      + + G     EAL+ N  +LV + YVERCP SEPFLA P++EE
Sbjct: 121 LQHGRLSSEQIFDGFRDRSSSG---GMEALQENMHKLVMARYVERCPISEPFLALPSEEE 177

Query: 714 TPSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFL--IITDIGTD 851
                RRG KSAK     ET+EQR + AA P E  RF   +  +IG D
Sbjct: 178 AAPVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGAD 225


>gb|EXC19135.1| DNA-directed RNA polymerase III subunit RPC3 [Morus notabilis]
          Length = 564

 Score =  186 bits (472), Expect = 1e-44
 Identities = 111/243 (45%), Positives = 142/243 (58%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           M   +GIK A+ LI++HFG LVA VC  LL KG LTL  + R+TEL   Q KN LL+LIQ
Sbjct: 1   MATPYGIKFAVHLITSHFGNLVANVCENLLRKGPLTLQQLIRFTELTPLQIKNSLLILIQ 60

Query: 360 HNCVQAFAIEKEGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXXX 539
           HNCVQ F+ E+ G G     +TQY V+++NILHRLRF KFL IVS               
Sbjct: 61  HNCVQPFSSEQIGAGGNEVKVTQYLVLFDNILHRLRFPKFLEIVSEELDKNCGEILEGLL 120

Query: 540 XXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEETP 719
                  EQI  RA        +  Q+A+R +F +L+NS +VERCP  EPF+ P+     
Sbjct: 121 QHGRLTLEQIYERA------RDNAVQDAVRESFQKLLNSRFVERCPAPEPFVEPS--TIK 172

Query: 720 STGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVNMPNPMR 899
           S+ +RG KSAKL   +ET EQR + AAA L+  RF I+T  GT+   D K G +  +   
Sbjct: 173 SSNKRGAKSAKLDEVSETEEQRVLAAAASLDTLRFSILTPSGTEFDEDKKDGDSSSSMGV 232

Query: 900 GEK 908
           GEK
Sbjct: 233 GEK 235


>ref|XP_006363319.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc3-like
           [Solanum tuberosum]
          Length = 525

 Score =  186 bits (472), Expect = 1e-44
 Identities = 109/241 (45%), Positives = 146/241 (60%), Gaps = 8/241 (3%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           MV  HGIKLA+ LIS++FG+L AKVC CLL +GT TL  V   TEL     KNCLLVLI 
Sbjct: 1   MVSPHGIKLAVYLISSYFGDLNAKVCDCLLRRGTQTLYQVVSSTELTRTNVKNCLLVLIH 60

Query: 360 HNCVQAFAIEKE-GFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXX 536
           HNCVQAFA+++  GFG   +VITQY  +++NI+H+LRF KF+ IVS              
Sbjct: 61  HNCVQAFALQQPGGFGEEPKVITQYMALFDNIIHKLRFPKFIEIVSEEMGKECEEIFEGL 120

Query: 537 XXXXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                    +I+ R      +G S + +A R +F  LVN+ +VERCP  +P L P   E 
Sbjct: 121 LQHGRLTLTEIIERYKEASKQGDS-SADAARDSFNSLVNARFVERCPAPDPLLEPPAAEE 179

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDV-------TSDAKTG 875
            +  +RG KSAK+  +A+T+EQ+A+ AAAP+E+ RFL + DI  D        T+D K G
Sbjct: 180 TAAKKRGAKSAKI--QAQTMEQQALAAAAPMESMRFL-VEDIWNDSVERADKRTTDVKCG 236

Query: 876 V 878
           +
Sbjct: 237 M 237


>ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
           [Ricinus communis] gi|223549895|gb|EEF51382.1|
           DNA-directed RNA polymerase III 62 kDa polypeptide,
           putative [Ricinus communis]
          Length = 485

 Score =  184 bits (466), Expect = 5e-44
 Identities = 102/231 (44%), Positives = 135/231 (58%)
 Frame = +3

Query: 189 QHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQHNC 368
           QHGIK A  +I+ HFG LVAKVC CLL KG LT+  V  +TEL   Q KN LLVLIQHNC
Sbjct: 5   QHGIKYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHNC 64

Query: 369 VQAFAIEKEGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXXXXXX 548
           VQA+       G   ++ T Y  +++NILHR+RFSKFLAI+S                  
Sbjct: 65  VQAYR-----SGDDLKLTTHYIALFDNILHRVRFSKFLAIISQDFHKSCVDIVEGLLEHG 119

Query: 549 XXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEETPSTG 728
               +QI+ RA    N   SI  ++++ N  +LVN  Y+E CP SEP LAP  EE     
Sbjct: 120 RLTVKQIVDRA----NSRNSIGLDSVKENLCKLVNGRYIEHCPASEPVLAPPTEEEDRAK 175

Query: 729 RRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTGVN 881
           +R  KSAK+   +ET+EQR +  A P++A+RF +  D+ T++  DA+   N
Sbjct: 176 KRSAKSAKIVIESETLEQRVLAVAVPMDAKRFSV--DLDTELKDDAENDQN 224


>ref|XP_007219003.1| hypothetical protein PRUPE_ppa004195mg [Prunus persica]
           gi|462415465|gb|EMJ20202.1| hypothetical protein
           PRUPE_ppa004195mg [Prunus persica]
          Length = 524

 Score =  176 bits (446), Expect = 1e-41
 Identities = 94/223 (42%), Positives = 138/223 (61%)
 Frame = +3

Query: 183 VVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQH 362
           + Q+GIK A+ +I+++FG LVAKVC  LL +G L+L  +  +TEL  QQ KN LL+LIQH
Sbjct: 3   LTQYGIKYAVHIITSNFGNLVAKVCEILLRRGHLSLKQLIGFTELTPQQVKNSLLILIQH 62

Query: 363 NCVQAFAIEKEGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXXXX 542
           NCVQ F+ ++         +TQY  +++NI+HR RF+KFLA+VS                
Sbjct: 63  NCVQPFSFDQS----EGPKVTQYIALFDNIIHRGRFAKFLAVVSQELDTDRELILKDLLE 118

Query: 543 XXXXXXEQIMLRAISKQNEGTSINQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEETPS 722
                 +QI+  A S +++G S ++++++ +F++LVN+H+VERCP  EP L    ++   
Sbjct: 119 NGRLTLKQIIEGAESSKSQGDSADKDSVQESFLKLVNAHFVERCPAPEPVLGQATKQEGP 178

Query: 723 TGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTD 851
             +RG KSAK+    ETIEQR + AAAP EA RF I+ D   D
Sbjct: 179 AKKRGAKSAKMVEVPETIEQRVIAAAAPPEAIRFSIMIDSEAD 221


>tpg|DAA58620.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
          Length = 507

 Score =  171 bits (433), Expect = 4e-40
 Identities = 100/233 (42%), Positives = 136/233 (58%), Gaps = 1/233 (0%)
 Frame = +3

Query: 180 MVVQHGIKLAISLISAHFGELVAKVCGCLLHKGTLTLSDVTRYTELPSQQAKNCLLVLIQ 359
           MV QHGI LA+++IS HFG +V+KVCGCLL  G L+L D+ R  EL   Q KN LL+LIQ
Sbjct: 1   MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLQDIVRRLELSPGQVKNSLLILIQ 60

Query: 360 HNCVQAFAIEKEGFGVAARVITQYSVIYENILHRLRFSKFLAIVSXXXXXXXXXXXXXXX 539
           HNCVQA+   +   G   R +T Y  I++N+LHRLRFSKFL++V                
Sbjct: 61  HNCVQAYTSPR---GAGDRTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPEVSEVLLEGLL 117

Query: 540 XXXXXXXEQIMLRAISKQNEGTSI-NQEALRTNFVRLVNSHYVERCPTSEPFLAPTDEET 716
                  EQ++ R I K +E + +  +E +R NF +LV +HYVERCP  EPF  P   E 
Sbjct: 118 QNGRLTFEQLVERTIFKVSEDSPLPTREEVRMNFNKLVYAHYVERCPKPEPFFDPLAVEQ 177

Query: 717 PSTGRRGTKSAKLTGRAETIEQRAMKAAAPLEAERFLIITDIGTDVTSDAKTG 875
           P++ R+  ++ K      ++EQ+ +  AA  +AERF  I     D +S AK G
Sbjct: 178 PTSTRK--RAPKTVEAVLSLEQKVVCTAALSDAERFSEIPYF-MDGSSSAKDG 227