BLASTX nr result
ID: Cocculus23_contig00019851
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00019851
(858 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 300 4e-79
ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Th... 287 4e-75
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 285 2e-74
ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prun... 281 2e-73
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 276 9e-72
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 275 1e-71
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum] 275 2e-71
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 271 2e-70
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 271 3e-70
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 265 2e-68
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 259 9e-67
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 259 1e-66
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 256 8e-66
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A... 250 4e-64
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 250 6e-64
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ... 248 3e-63
gb|AHL27587.1| RNA-dependent RNA polymerase 4 [Salvia miltiorrhiza] 247 5e-63
ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutr... 247 5e-63
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 243 5e-62
ref|XP_006286933.1| hypothetical protein CARUB_v10000076mg, part... 241 2e-61
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 300 bits (769), Expect = 4e-79
Identities = 151/267 (56%), Positives = 196/267 (73%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S IP T IAK+L+ F ES LG +++A EI TE KNWK RGFGRVQF+ +A AA LLS
Sbjct: 12 SNIPKTAIAKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAADLLS 71
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
+G LV +G+ L IS +FDDI+VRP + N++ GVLHVGFLV++D VLESW+ VK
Sbjct: 72 LQGDLVFRGSSLSISATFDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEGVKTL 131
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
VMPER R+EFWV ++GE YKLEV F D+L + C L G + +A+LLKLKYAPKI+QK +G
Sbjct: 132 VMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIFQKFAG 191
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
P +ASKFS DRYH+ KE+ +F+W+RTT+FS +K++GQSTSF E++EG A I ASFPY
Sbjct: 192 PNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFASFPY 251
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVK 853
Y ++ +TL Q C + +VPLVK
Sbjct: 252 YK-DLTELTLEQGEGFCSDSGLVPLVK 277
>ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|590663258|ref|XP_007036162.1| RNA-dependent RNA
polymerase 2 isoform 1 [Theobroma cacao]
gi|508773406|gb|EOY20662.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 287 bits (734), Expect = 4e-75
Identities = 141/267 (52%), Positives = 185/267 (69%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
+ +P T IAKDL +F E LG ++VFA EI T+R NWK RGFGRVQF EA + A+LLS
Sbjct: 19 TNVPQTAIAKDLLEFLEYKLGTDTVFAIEISTDRNNWKSRGFGRVQFATLEAKSKAHLLS 78
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
LV + L++S ++DDI+ RP +A +RL GVLHVGF+VQ+D VLE W+ V+
Sbjct: 79 LRNDLVFKSHSLKLSETYDDIIPRPIRADHRLDGGVLHVGFMVQDDYLRVLERWEDVRGW 138
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
+MPER+R+EFW+ NGE YKLEV F D+L GC G +A+LL++KYAP+IYQK+SG
Sbjct: 139 LMPERRRLEFWLWNNGECYKLEVLFDDVLETVGCCFNGSSCNALLLRVKYAPRIYQKVSG 198
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
P +ASK DRYH+CKENFDF+WVRTT+FS KA+GQST+F E+ L + + F
Sbjct: 199 PNIASKLRPDRYHICKENFDFLWVRTTDFSRTKAVGQSTAFYWEINAELLTLDLFSCFSC 258
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVK 853
Y ++ +TL G+ A EIVPLVK
Sbjct: 259 YREDMKGLTLKGGGEFSSAPEIVPLVK 285
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 285 bits (729), Expect = 2e-74
Identities = 140/266 (52%), Positives = 195/266 (73%), Gaps = 1/266 (0%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S IP T IAK LFDFFES++GK SVFAC+I +E KNWK RG GRVQF+ ++ + LS
Sbjct: 14 SNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSKLQSLSLS 73
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
++GKLV +G L ++ SFDDI+ RP + + R G+LH G L++ D VLE+W++VK
Sbjct: 74 EQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLETWENVKTL 133
Query: 413 VMPERKRIEFWVAQ-NGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLS 589
+MPERK +EFWV+ GE Y+LEVQFGDI+ CSL +E +A+LLKLK+APK+YQ++S
Sbjct: 134 IMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLE-DEKTALLLKLKHAPKLYQRVS 192
Query: 590 GPTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFP 769
GP VASKFS+DRYH+C+E+ +F+WVRTT+FS +K+IG S+S E+++G L+S +L+ P
Sbjct: 193 GPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLLSGLP 252
Query: 770 YYAGEVGCMTLGQTGQSCCAAEIVPL 847
Y +V + L + G A+E+VPL
Sbjct: 253 YCNNDVMDLVLDEVGDIYSASELVPL 278
>ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
gi|462407047|gb|EMJ12511.1| hypothetical protein
PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 281 bits (719), Expect = 2e-73
Identities = 139/268 (51%), Positives = 187/268 (69%), Gaps = 1/268 (0%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S IP T+ AK+L F +S LG +SVFA EI+++ KNWK RGFGRVQF EA + AY LS
Sbjct: 12 SNIPQTVTAKELLSFLQSKLGTDSVFAVEIISDHKNWKSRGFGRVQFTTLEAKSEAYSLS 71
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
+ LV + L +S ++DDI+ RP RL VLH GF+V+ D +LESW+ V+A
Sbjct: 72 LQNGLVFKSESLRLSETYDDIIQRPVDPKRRLNGTVLHAGFMVKGDCMSMLESWEGVRAW 131
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
VMPERKR+EFWV E YKLE+ F +I+ +FGC L GE+ +A+LLKLK+ P+I++K+SG
Sbjct: 132 VMPERKRVEFWVWLRDECYKLEIAFENIMESFGCRLGGEKVNALLLKLKFGPRIFRKISG 191
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
P VA++FSTDRYH+CK++FDF+WVRTT+FS +K+IG STSF E++E S + FPY
Sbjct: 192 PNVAARFSTDRYHVCKDDFDFLWVRTTDFSDMKSIGYSTSFCWEIEEEFSVSDVFECFPY 251
Query: 773 YA-GEVGCMTLGQTGQSCCAAEIVPLVK 853
Y +V + L + C +E VPLVK
Sbjct: 252 YKDNDVVDLILDNGEKYCSPSETVPLVK 279
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 276 bits (705), Expect = 9e-72
Identities = 138/267 (51%), Positives = 187/267 (70%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S IP + IAKDLFDFF+S +GK SVFAC+I +E KNWK RG GRVQF+ + LS
Sbjct: 14 SNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQDKLHCLSLS 73
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
++G L+ +G L + SFDDI+ RP + R G+LH G LV+ D VLE+W+ VK
Sbjct: 74 EQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVLETWEDVKTL 133
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
+MPERK +EFWV+ E Y+LEVQFGD++ A CSL ++ SA+LLKLK+APK+YQ++SG
Sbjct: 134 IMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSLENQK-SALLLKLKHAPKLYQRVSG 192
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
P VASKFS DRYH+CKE+ +F+WVRTT+FS +K+IG S+S E ++G L+S +L+S P
Sbjct: 193 PAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLSSDLLSSLPC 252
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVK 853
+V + L + G +E VPLV+
Sbjct: 253 CNKDVIDLDLDKVGDIYSGSEFVPLVR 279
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 275 bits (704), Expect = 1e-71
Identities = 138/265 (52%), Positives = 180/265 (67%)
Frame = +2
Query: 59 IPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLSQE 238
IP T +AKDL DFFES LG +SVFA EI T+R NWK RGFGRVQF +A + A LS+
Sbjct: 16 IPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAKSDALRLSRH 75
Query: 239 GKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKADVM 418
L+ + L++S ++DDI+ RP +A +RL GVLH GF+ +D VLE W+ V+ +M
Sbjct: 76 DHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLERWEGVRGWIM 135
Query: 419 PERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSGPT 598
PER+R+EFWV +GE YKL+ F DI GC G +A+LL+++YAP+IYQK+SGP
Sbjct: 136 PERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGSACNALLLRVRYAPRIYQKVSGPN 195
Query: 599 VASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPYYA 778
VASKFSTDRYH+CKE FDF+WVRTT+FS +K+IGQSTSF E G S + P Y
Sbjct: 196 VASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISDMSTYLPCYR 255
Query: 779 GEVGCMTLGQTGQSCCAAEIVPLVK 853
++ +L + +EIVPLVK
Sbjct: 256 EDIQSPSLEARREFSSPSEIVPLVK 280
>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 275 bits (702), Expect = 2e-71
Identities = 136/267 (50%), Positives = 181/267 (67%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
+ IP T +AKDL DFFES LG +SVFA EI T+R NWK RGFGRVQF +A + A LS
Sbjct: 14 TNIPQTAVAKDLLDFFESKLGPDSVFAIEISTDRNNWKSRGFGRVQFAAPQAMSDALRLS 73
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
+ L+ + L++S ++DDI+ RP +A +RL GVLH GF+ +D VLE W+ V+
Sbjct: 74 RHDHLLFKSHSLKLSRTYDDIIPRPIRADHRLDGGVLHAGFMSSDDCLRVLERWEGVRGW 133
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
+MPER+R+EFWV +GE YKL+ F D+ GC G +A+LL+++YAP+ Y+K+SG
Sbjct: 134 IMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGSACNALLLRVRYAPRTYRKVSG 193
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
P VASKFSTDRYH+CKE FDF+WVRTT+FS +K+IGQSTSF E G S + P
Sbjct: 194 PNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISDMSTYLPC 253
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVK 853
Y ++ +L G+ +EIVPLVK
Sbjct: 254 YREDIQSPSLEARGEFSSPSEIVPLVK 280
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 271 bits (694), Expect = 2e-70
Identities = 141/268 (52%), Positives = 183/268 (68%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S +P + IA+DL +F S LG +SVFA EI TERKNWK RG GRVQF EA A LS
Sbjct: 12 SNVPESAIAQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAKAMSLS 71
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
+ LV +L S DDIVVRP A NR GVLHVGF+++E+R VLESW+ VKA
Sbjct: 72 VQNSLVFGTQNLRFSLINDDIVVRPVHATNRTENGVLHVGFMLKEERMSVLESWEGVKAW 131
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
+MPER+RIEFW+ E YKLEV F +IL G L E+ +A+LLKLKYAP+IY+K+SG
Sbjct: 132 IMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIYKKISG 191
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
+AS+FS+ RY +C E++D++WVRTTEFS ++++GQSTSF E++E AS I + FP+
Sbjct: 192 SNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPF 251
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVKS 856
Y + L + C +EIVPL+KS
Sbjct: 252 YKETQKDIVLEDGEEFCSTSEIVPLIKS 279
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 271 bits (692), Expect = 3e-70
Identities = 137/268 (51%), Positives = 185/268 (69%), Gaps = 1/268 (0%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
+ IP TI AK++ + + LGK+SVFA EI T RKNW RGFGRVQF E + A LS
Sbjct: 13 TNIPQTITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKHEALSLS 72
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
+ KLVL+ +L++S ++DDI+ RP + NR+ GVL+VGF+ +E VLE W+ V+
Sbjct: 73 LKNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEGVRGW 132
Query: 413 VMPERKRIEFWVAQNGE-TYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLS 589
MPER+RIEFW+ E YKL V+F DIL A G L G++ +AV+LKL+Y P+IYQK+S
Sbjct: 133 FMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIYQKIS 192
Query: 590 GPTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFP 769
GP +ASKFST+RY CKE+FDF+WVRTT+ S +K+IGQSTSF E+ EG AS +FP
Sbjct: 193 GPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTFRNFP 252
Query: 770 YYAGEVGCMTLGQTGQSCCAAEIVPLVK 853
YY ++ + L + C A+E VPL++
Sbjct: 253 YYQEDMNRLDLEDGEEFCSASETVPLIR 280
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum
lycopersicum]
Length = 1119
Score = 265 bits (676), Expect = 2e-68
Identities = 131/267 (49%), Positives = 184/267 (68%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S IP + IAKDL +FF+S +GK SVFAC+I +E KNWK RG GRVQF+ + L+
Sbjct: 14 SNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQDKLHCLSLA 73
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
++G L+ +G L + SFDDI+ RP + R G+LH G LV++D VLE+W+ VK
Sbjct: 74 EQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVLETWEDVKTL 133
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
+MPERK +EFWV+ E Y+LEVQFGD+ CS+ ++ SA+LLKLK+APK+YQ++SG
Sbjct: 134 IMPERKCLEFWVSHAEECYRLEVQFGDVTEGTLCSVENQK-SALLLKLKHAPKLYQRVSG 192
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
P VASKFS DRYH+CKE+ +F+W+RTT+FS +K+IG S+S E ++G L+S + +S P
Sbjct: 193 PAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLSSDLFSSLPC 252
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVK 853
+V + L + G +E VPLV+
Sbjct: 253 CNQDVIDLDLDKVGDIYSGSEFVPLVR 279
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 259 bits (662), Expect = 9e-67
Identities = 141/285 (49%), Positives = 184/285 (64%), Gaps = 18/285 (6%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S IP T IAKDL F ES LGK SVFA EI+T+R NWK RG GRVQF + + A LS
Sbjct: 9 SNIPQTAIAKDLLLFLESKLGKNSVFALEIITDRSNWKSRGIGRVQFTSLDFKSKAQNLS 68
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
KLV +L+IS + DIV RP +A +R+ GVLHVG + +E+R VL++++ V+
Sbjct: 69 LNDKLVFNSQNLKISETHSDIVPRPVKAQHRVEDGVLHVGVMCKEERLRVLQTFEGVRGW 128
Query: 413 VMPERKRIEFWV--AQNGE---------------TYKLEVQFGDILSAFGCSL-RGEESS 538
++P+R+R+EFWV NGE +K+E+ F D+L G SL G +
Sbjct: 129 LLPDRRRLEFWVWPKHNGEWQKGIQECQSDSSDCCFKVEILFEDVLETVGFSLDEGATVN 188
Query: 539 AVLLKLKYAPKIYQKLSGPTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFV 718
+L KLKY PKIYQK+SGP VASKF +DRYH+CKE+FDF WVRTT+FSV K+IG STSF
Sbjct: 189 GILFKLKYGPKIYQKVSGPHVASKFPSDRYHICKEDFDFFWVRTTDFSVTKSIGCSTSFF 248
Query: 719 LELQEGSLASQILASFPYYAGEVGCMTLGQTGQSCCAAEIVPLVK 853
E++ G LAS I FP+Y + + L + + C +EIVPLVK
Sbjct: 249 WEIKNGLLASDISNIFPFYKEDKTDLILEEGEEFCTTSEIVPLVK 293
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca
subsp. vesca]
Length = 1136
Score = 259 bits (661), Expect = 1e-66
Identities = 127/267 (47%), Positives = 177/267 (66%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
+ IP TI A +L F ES LG +SVFA EIV++ KNWK RG+GR+QF A LS
Sbjct: 15 TNIPCTITATELLHFLESALGPDSVFAVEIVSDHKNWKSRGYGRIQFTALRHKARAQSLS 74
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
L + +L + + DDI+ RP +RL VLH GF+V ++ VLESW+ V+A
Sbjct: 75 SSADLFFKSHNLRLFEAHDDIIPRPLDPRHRLNSTVLHAGFVVNDETMSVLESWEGVRAW 134
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
VMPERKR+EFWV + G+ YK+E+ F +I+ + GC L G++ +A+ LKLK+ PKI+++LSG
Sbjct: 135 VMPERKRVEFWVWRVGDCYKMEIAFENIVESVGCCLGGDKVNALRLKLKFGPKIFRQLSG 194
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
P VASKFS DRYH+CKE+FD++WVR T+FS +K+IG ST+F E+QE A+ + +FP
Sbjct: 195 PNVASKFSADRYHVCKEDFDYLWVRCTDFSEMKSIGHSTAFCWEIQEDVAAAGVFTTFPS 254
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVK 853
+ +V + G +E VPLVK
Sbjct: 255 FRKDVVDLMFEDGGDCLLVSETVPLVK 281
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 256 bits (654), Expect = 8e-66
Identities = 131/265 (49%), Positives = 170/265 (64%)
Frame = +2
Query: 59 IPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLSQE 238
IP + AKDL F EST+G SVFA EI ++ NWK RG GRVQF+ FEA + A LS
Sbjct: 16 IPQSATAKDLLHFLESTVGPSSVFALEIFSDHSNWKSRGSGRVQFETFEAKSKALSLSSN 75
Query: 239 GKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKADVM 418
KL+ L ++ S DDIV RP NRL G LH GF + DR V++SW+ VK VM
Sbjct: 76 DKLLFNSHFLRLAASSDDIVPRPPLPCNRLHNGTLHAGFPLGPDRMSVIQSWEGVKGWVM 135
Query: 419 PERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSGPT 598
PER R++FWV + + +KLE+ F +IL G S G + +A+LLKLKY P+IYQ++ GP
Sbjct: 136 PERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGSKPNALLLKLKYGPRIYQRMEGPN 195
Query: 599 VASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPYYA 778
V++KF DRY CKE+F F+WVRTT+FS LK+IG STSF E++E S S + SFP Y
Sbjct: 196 VSAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVFRSFPLYR 255
Query: 779 GEVGCMTLGQTGQSCCAAEIVPLVK 853
+ ++L + C E VPLVK
Sbjct: 256 ENLKDLSLEDGEEFCSPTETVPLVK 280
>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
gi|548839203|gb|ERM99496.1| hypothetical protein
AMTR_s00088p00026960 [Amborella trichopoda]
Length = 1107
Score = 250 bits (639), Expect = 4e-64
Identities = 127/268 (47%), Positives = 178/268 (66%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S IPL+ +A++L F ES +G S+FAC IVTER+NWK +GFGRVQF+ A A LS
Sbjct: 9 STIPLSALAEELLQFLESHIGPRSIFACTIVTERRNWKSKGFGRVQFETCNDAKKANDLS 68
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
EGKLV QG HL ++ +DIV RP + NR+ G L VG LV ED V+ SW VKA+
Sbjct: 69 LEGKLVFQGNHLSLTLGCEDIVPRPCRVENRVNGGFLKVGCLVYEDSMSVIGSWNLVKAE 128
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
+MPERKR++F+V++ GE +KLE +F DI+ FGC + G A+LL++KYAP+IY K+
Sbjct: 129 LMPERKRVDFYVSERGELFKLETRFEDIVETFGCQIGGTNFDAILLQIKYAPRIYCKVPS 188
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
+SK DRYH+CKE ++F WVRTT+FS + IGQST F L E + + I SFP+
Sbjct: 189 ---SSKCGRDRYHICKEEYEFDWVRTTDFSASRTIGQSTYFCWMLHESTDIAIIKKSFPH 245
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVKS 856
+ E+ + L + C ++++VP++ +
Sbjct: 246 HK-EIQTLYLDKGVSFCSSSDLVPIINT 272
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 250 bits (638), Expect = 6e-64
Identities = 127/268 (47%), Positives = 172/268 (64%), Gaps = 1/268 (0%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
+ IP T A DL + E+T+G+ SVFA EI ++ NWK RG GRVQF+ EA + A L+
Sbjct: 14 TNIPHTATANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKALTLA 73
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
+ KL+L L + S DDI+ RP NR+ G L+ GF + D VL+SW+ V+
Sbjct: 74 ENKKLLLSSHFLCLDASSDDIIPRPALPRNRINNGALYAGFPIGPDCMSVLQSWEGVRGW 133
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFG-CSLRGEESSAVLLKLKYAPKIYQKLS 589
VMPER+R++FWV + +KLE+ F +IL G CS G + +A+LLKL+Y P+IYQK++
Sbjct: 134 VMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMA 193
Query: 590 GPTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFP 769
GP VA+KF DRY CKENF+F+WVRTT+FS LK+IG STSF E+ E S S + SFP
Sbjct: 194 GPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVFRSFP 253
Query: 770 YYAGEVGCMTLGQTGQSCCAAEIVPLVK 853
Y + ++L + C E VPLVK
Sbjct: 254 LYRENLKDLSLEDGEKFCSPTETVPLVK 281
>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 248 bits (632), Expect = 3e-63
Identities = 123/271 (45%), Positives = 176/271 (64%), Gaps = 3/271 (1%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S +P TI+A +L F E LG+++VFA EI+T R NWKPR F RVQF E + A LLS
Sbjct: 15 SNVPQTIVADELLRFLELNLGEDTVFALEILTTRDNWKPRDFARVQFTTLEVKSRAQLLS 74
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQED-RFHVLESWKSVKA 409
+ KL+ + +L +S ++DDI+ RP RL VL VGF ++ RF LE W V+
Sbjct: 75 SQSKLLFKTHNLRLSEAYDDIIPRPVDPRRRLDDIVLTVGFPESDEKRFCALEKWDGVRC 134
Query: 410 DVMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGE--ESSAVLLKLKYAPKIYQK 583
++ E++R+EFWV +NGE YK+EV+F DI+ C + G+ E++A LLKLKY PK++++
Sbjct: 135 WILEEKRRLEFWVWENGECYKIEVRFEDIVETLCCCVNGDASETNAFLLKLKYGPKVFKR 194
Query: 584 LSGPTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILAS 763
+SGP +A+KF +DRY CKE+FDF+W+RTT+FS LK+IG ST F LE+ GS + +
Sbjct: 195 VSGPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSIGTSTCFCLEVHNGSTMLDVFSG 254
Query: 764 FPYYAGEVGCMTLGQTGQSCCAAEIVPLVKS 856
PYY E +T ++IVPL+ +
Sbjct: 255 LPYYREETLSLTFVDGKNFASVSQIVPLLNA 285
>gb|AHL27587.1| RNA-dependent RNA polymerase 4 [Salvia miltiorrhiza]
Length = 972
Score = 247 bits (630), Expect = 5e-63
Identities = 131/273 (47%), Positives = 181/273 (66%), Gaps = 5/273 (1%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
+ IP IAKDL F ES LGK +VFA EI TER+NWK RG GRVQF+ EA A LS
Sbjct: 18 TNIPPIAIAKDLQAFLESVLGKGTVFAVEIFTERENWKSRGHGRVQFESPEAKIEALSLS 77
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIG---VLHVGFLVQEDRFHVLESWKSV 403
K + +G +L ++ S ++I++RP R+ G VL G +++ D LESW +
Sbjct: 78 HHRKFLFKGFYLSVTHSLEEIIIRPVDPIYRVGDGGGLVLFAGIMIRADCMGTLESWNGM 137
Query: 404 KADVMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESS--AVLLKLKYAPKIY 577
K MPERK+I F+V GE+YKLEVQFGD+L + GC L G + A+LLKL++APKI+
Sbjct: 138 KLWFMPERKKIHFFVDHGGESYKLEVQFGDVLESRGCCLGGGDMKVDAILLKLRHAPKIF 197
Query: 578 QKLSGPTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQIL 757
+K+SGP +AS+F+TDRYH+CKE++DFIWVRTT+FS +K+IG +S E++EG +
Sbjct: 198 KKVSGPKIASRFTTDRYHICKEDYDFIWVRTTDFSSMKSIGYLSSLCWEIEEGFSNLDLY 257
Query: 758 ASFPYYAGEVGCMTLGQTGQSCCAAEIVPLVKS 856
S PYY EV + + Q A+++VP+VK+
Sbjct: 258 TSLPYYTKEVTELAFEEV-QFNHASDLVPIVKN 289
>ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutrema salsugineum]
gi|557097970|gb|ESQ38406.1| hypothetical protein
EUTSA_v10028370mg [Eutrema salsugineum]
Length = 1124
Score = 247 bits (630), Expect = 5e-63
Identities = 126/270 (46%), Positives = 172/270 (63%), Gaps = 2/270 (0%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
+ +P TI+A +L F E LG+++VFA EI T R+NWKPR F RVQF E + A+LLS
Sbjct: 13 TNVPQTIVADELLRFLELHLGEDTVFALEIPTSRENWKPRDFARVQFTSLEVKSRAHLLS 72
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFL-VQEDRFHVLESWKSVKA 409
+ KL+ + +L IS ++DDI+ RP L VL VGF E RF LE W+ V+
Sbjct: 73 SQSKLLFKSRNLRISEAYDDIIPRPVDPRKMLDGVVLTVGFPEADEGRFCALEKWEGVRC 132
Query: 410 DVMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRG-EESSAVLLKLKYAPKIYQKL 586
V+ E++R+EFWV GE YKLEV+F DI+ GC G E +A L+LKY PKIY+K+
Sbjct: 133 WVIEEKRRVEFWVCDGGECYKLEVRFEDIVETVGCCFNGASEINAFFLRLKYGPKIYKKV 192
Query: 587 SGPTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASF 766
SGP +A+KF +DRY CKE+FDF+W+R+T+FS LK+IG S F LE+ GS I +SF
Sbjct: 193 SGPHIATKFKSDRYRFCKEDFDFMWIRSTDFSGLKSIGTSNCFCLEVNNGSTTLDIFSSF 252
Query: 767 PYYAGEVGCMTLGQTGQSCCAAEIVPLVKS 856
PY+ + +T A +IVPL+ +
Sbjct: 253 PYFREDTLSLTSVDGKTFASANQIVPLLNT 282
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 243 bits (621), Expect = 5e-62
Identities = 131/267 (49%), Positives = 165/267 (61%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
+ IP T IA DL F ES LG SVFA EI TERKNWK RGFGRVQF A A LS
Sbjct: 13 TNIPQTAIATDLQTFLESKLGPNSVFAVEISTERKNWKSRGFGRVQFTSLAAKLVAQALS 72
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQEDRFHVLESWKSVKAD 412
V + +L I + DDIV P RL GVLH GF++++DR VL+SW+ V+A
Sbjct: 73 LSNNFVFRSRNLGIFDTHDDIVALPVDPKLRLEDGVLHAGFMIRDDRMAVLQSWEGVRAW 132
Query: 413 VMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGEESSAVLLKLKYAPKIYQKLSG 592
MPER R+EFWV + + YKLEV F D+L G L + A LL+LKY PKIY+++S
Sbjct: 133 AMPERNRVEFWVWSDEDCYKLEVAFEDVLETVGYCLDDGKLYAFLLQLKYGPKIYKRISR 192
Query: 593 PTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILASFPY 772
P SKF DRYH+CKE+F+F WVRTT+F K+IG STS + +E L+S SFPY
Sbjct: 193 P---SKFVADRYHICKEDFEFHWVRTTDFLESKSIGHSTSLCWDAKEDFLSSDTFRSFPY 249
Query: 773 YAGEVGCMTLGQTGQSCCAAEIVPLVK 853
Y + + L + + C +E VPL+K
Sbjct: 250 YREGMKDLILEDSDEFCSVSETVPLIK 276
>ref|XP_006286933.1| hypothetical protein CARUB_v10000076mg, partial [Capsella rubella]
gi|482555639|gb|EOA19831.1| hypothetical protein
CARUB_v10000076mg, partial [Capsella rubella]
Length = 1165
Score = 241 bits (616), Expect = 2e-61
Identities = 121/271 (44%), Positives = 177/271 (65%), Gaps = 3/271 (1%)
Frame = +2
Query: 53 SKIPLTIIAKDLFDFFESTLGKESVFACEIVTERKNWKPRGFGRVQFDKFEAANAAYLLS 232
S +P TI+A +L F E LG+++VFA EI T R+NWKPR F RVQF E + A LLS
Sbjct: 46 SNLPQTIVADELLRFLELHLGEDTVFAIEIPTTRENWKPRDFARVQFTTLEVKSRAQLLS 105
Query: 233 QEGKLVLQGTHLEISPSFDDIVVRPTQAHNRLCIGVLHVGFLVQ-EDRFHVLESWKSVKA 409
+ KL+ + +L +S ++DDI+ RP RL VL VGF E+RF LE W+ V+
Sbjct: 106 SQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDVVLTVGFPESSEERFCALEKWEGVRC 165
Query: 410 DVMPERKRIEFWVAQNGETYKLEVQFGDILSAFGCSLRGE--ESSAVLLKLKYAPKIYQK 583
++ E++R+EFWV ++G+ Y++EV+F DI+ GC + G+ E +A LLKLKY PK++++
Sbjct: 166 WILEEKRRVEFWVWESGDCYRIEVRFEDIVETLGCCVNGDAFEINAFLLKLKYGPKVFKR 225
Query: 584 LSGPTVASKFSTDRYHMCKENFDFIWVRTTEFSVLKAIGQSTSFVLELQEGSLASQILAS 763
++GP +A+KF +RY CKE+FDF+W+RTT+FS K+IG ST F LE+ GS I +
Sbjct: 226 VTGPHIATKFKPNRYCFCKEDFDFMWIRTTDFSGSKSIGISTCFCLEVDNGSEMLDIFSC 285
Query: 764 FPYYAGEVGCMTLGQTGQSCCAAEIVPLVKS 856
FPYY + +T+ A +IVPL+ +
Sbjct: 286 FPYYRKDTLSLTIVDGNAFASACQIVPLLNA 316