BLASTX nr result
ID: Cocculus23_contig00019791
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00019791
(228 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 95 9e-18
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 95 1e-17
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 95 1e-17
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 95 1e-17
emb|CBI26820.3| unnamed protein product [Vitis vinifera] 94 2e-17
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 94 2e-17
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera] 94 2e-17
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr... 94 2e-17
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 93 4e-17
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 92 6e-17
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 92 1e-16
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 92 1e-16
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 91 1e-16
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 91 1e-16
ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prun... 91 2e-16
emb|CBI26821.3| unnamed protein product [Vitis vinifera] 90 3e-16
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 90 3e-16
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 90 3e-16
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola... 90 3e-16
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 90 4e-16
>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 95.1 bits (235), Expect = 9e-18
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYHVTYH +YWG YNEG+ RDHFLSF WCVYDKL+ IKK N RRQ ETL
Sbjct: 1036 AWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNAGRRQRQETL 1087
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 94.7 bits (234), Expect = 1e-17
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYHVTYH +YWG YNEG+ RDHFLSF WCVYDKL+ IKK N RRQ ETL
Sbjct: 1046 AWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETL 1097
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 94.7 bits (234), Expect = 1e-17
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYHVTYH +YWG YNEG+ RDHFLSF WCVYDKL+ IKK N RRQ ETL
Sbjct: 1046 AWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETL 1097
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 94.7 bits (234), Expect = 1e-17
Identities = 38/52 (73%), Positives = 42/52 (80%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYH+TYH +YWG YNEG+ RDHFLSF WCVYDKL+ IKK N RRQ ETL
Sbjct: 1046 AWYHITYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNAGRRQRQETL 1097
>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 94.4 bits (233), Expect = 2e-17
Identities = 38/48 (79%), Positives = 40/48 (83%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQL 144
AWYHVTYHP+YWG YNEGM RDHFLSFPWCVYDKLIH K+ S R L
Sbjct: 856 AWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSL 903
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 94.4 bits (233), Expect = 2e-17
Identities = 38/48 (79%), Positives = 40/48 (83%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQL 144
AWYHVTYHP+YWG YNEGM RDHFLSFPWCVYDKLIH K+ S R L
Sbjct: 1058 AWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSL 1105
>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 94.4 bits (233), Expect = 2e-17
Identities = 38/48 (79%), Positives = 40/48 (83%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQL 144
AWYHVTYHP+YWG YNEGM RDHFLSFPWCVYDKLIH K+ S R L
Sbjct: 591 AWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSL 638
>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
gi|557094740|gb|ESQ35322.1| hypothetical protein
EUTSA_v10006629mg [Eutrema salsugineum]
Length = 1108
Score = 94.0 bits (232), Expect = 2e-17
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYHVTYHP+YWG YNEG+ RDHFLSF WCVYDKL+ IKK N RRQ TL
Sbjct: 1047 AWYHVTYHPSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGRRQRQVTL 1098
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 92.8 bits (229), Expect = 4e-17
Identities = 38/52 (73%), Positives = 41/52 (78%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYHVTYH +YWG YNEG+ RDHFL F WCVYDKL+ IKK N RRQ ETL
Sbjct: 1046 AWYHVTYHSSYWGLYNEGLNRDHFLIFAWCVYDKLVRIKKTNAGRRQRQETL 1097
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 92.4 bits (228), Expect = 6e-17
Identities = 37/45 (82%), Positives = 39/45 (86%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSR 135
AWYHVTYH NYWG YNEGM RDHFLSFPWCVYDKLI IK+ N +R
Sbjct: 1068 AWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSAR 1112
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 91.7 bits (226), Expect = 1e-16
Identities = 38/52 (73%), Positives = 41/52 (78%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYHVTYH +YWG YNEG+ RDHFLSF WCVYDKL+ IKK N RRQ E L
Sbjct: 1048 AWYHVTYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGRRQRQEAL 1099
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 91.7 bits (226), Expect = 1e-16
Identities = 40/60 (66%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRS-RRQLD-ETLSHQIKK 174
AWY+VTYHP+YWG YNEGM RDHFLSFPWCVYDKLI IKK + R LD +L H+ ++
Sbjct: 1046 AWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQR 1105
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 91.3 bits (225), Expect = 1e-16
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRR 138
AWYHVTYHP+YWG YNEGM R+HFLSFPWCVYDKLI IKK SRR
Sbjct: 1046 AWYHVTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRR 1091
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 91.3 bits (225), Expect = 1e-16
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQ 141
AWY+VTYH +YWG YNEGMKRDH+LSFPWCVYDKL+ IK+NN RR+
Sbjct: 1064 AWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRE 1110
>ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prunus persica]
gi|462422197|gb|EMJ26460.1| hypothetical protein
PRUPE_ppa001524mg [Prunus persica]
Length = 808
Score = 90.5 bits (223), Expect = 2e-16
Identities = 37/61 (60%), Positives = 46/61 (75%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETLSHQIKKKN 180
AWYHVTYHP Y+G YNEG+ RDHF+SFPWCVYDKL+HIKK S R+ S + + +N
Sbjct: 744 AWYHVTYHPKYFGCYNEGLNRDHFISFPWCVYDKLVHIKKEKASVRRARNLSSLERRFRN 803
Query: 181 N 183
+
Sbjct: 804 D 804
>emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 90.1 bits (222), Expect = 3e-16
Identities = 38/52 (73%), Positives = 41/52 (78%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYHVTYHP YWG YNEGM DHFLSFPWCVYDKLI IK++ S R L +L
Sbjct: 890 AWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIRSLHLSL 941
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 90.1 bits (222), Expect = 3e-16
Identities = 38/52 (73%), Positives = 41/52 (78%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETL 156
AWYHVTYHP YWG YNEGM DHFLSFPWCVYDKLI IK++ S R L +L
Sbjct: 1056 AWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIRSLHLSL 1107
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 90.1 bits (222), Expect = 3e-16
Identities = 39/65 (60%), Positives = 45/65 (69%), Gaps = 6/65 (9%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRR------QLDETLSH 162
AWYHVTYHP YWG YN+G+KRDHF+SFPWCVYD+LI IKK R L LSH
Sbjct: 1051 AWYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSH 1110
Query: 163 QIKKK 177
++ K
Sbjct: 1111 KLVLK 1115
>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 90.1 bits (222), Expect = 3e-16
Identities = 39/65 (60%), Positives = 45/65 (69%), Gaps = 6/65 (9%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRR------QLDETLSH 162
AWYHVTYHP YWG YN+G+KRDHF+SFPWCVYD+LI IKK R L LSH
Sbjct: 899 AWYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSH 958
Query: 163 QIKKK 177
++ K
Sbjct: 959 KLVLK 963
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 89.7 bits (221), Expect = 4e-16
Identities = 37/59 (62%), Positives = 45/59 (76%)
Frame = +1
Query: 1 AWYHVTYHPNYWGSYNEGMKRDHFLSFPWCVYDKLIHIKKNNRSRRQLDETLSHQIKKK 177
AWY+VTYHP+Y+G YNEGMKRDH+LSFPWCVYDKL+ IKK+N R +L Q +
Sbjct: 1049 AWYYVTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKDNSRRASQMASLRRQFNDR 1107