BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00019495
         (336 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   102   3e-21
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   101   4e-20
emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]   100   5e-20
emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]    99   2e-19
emb|CAN66884.1| hypothetical protein VITISV_000961 [Vitis vinifera]    96   7e-18
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...    92   1e-17
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    92   1e-17
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...    91   3e-17
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...    91   3e-17
ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488...    93   3e-17
ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660...    93   4e-17
gb|ABA97278.2| retrotransposon protein, putative, Ty1-copia subc...    88   5e-17
emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]    92   6e-17
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    92   7e-17
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...    89   8e-17
gb|AAB82754.1| retrofit [Oryza longistaminata]                         92   1e-16
gb|AAU90262.1| integrase core domain containing protein [Oryza s...    91   1e-16
gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-...    88   1e-16
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...    91   2e-16
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...    91   2e-16

>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  102 bits (253), Expect(2) = 3e-21
 Identities = 45/60 (75%), Positives = 49/60 (81%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTSGKIYISRDVHFNE 107
           S L+ FGC CYPNL+PFNHHKLQFRS  C FLGY LNHKGYKCLS +G I ISRDV F+E
Sbjct: 726 SXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDE 785



 Score = 25.4 bits (54), Expect(2) = 3e-21
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEY 286
           L  KSP E+L+H  P Y
Sbjct: 709 LKNKSPLEVLFHQKPSY 725


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  101 bits (251), Expect(2) = 4e-20
 Identities = 41/61 (67%), Positives = 53/61 (86%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTSGKIYISRDVHFNE 107
           S L+ FGCSC+PNL+P+N HKLQ+RS+EC FLGY L HKGYKC+S++G++YIS DV FNE
Sbjct: 743 SFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNE 802

Query: 106 S 104
           +
Sbjct: 803 T 803



 Score = 22.3 bits (46), Expect(2) = 4e-20
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEY 286
           LH K P E+L+   P+Y
Sbjct: 726 LHHKCPIEVLFKSIPDY 742


>emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]
          Length = 846

 Score =  100 bits (250), Expect(2) = 5e-20
 Identities = 41/61 (67%), Positives = 53/61 (86%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTSGKIYISRDVHFNE 107
           S L+ FGCSC+PNL+P+N HKLQ+RS+EC FLGY L HKGYKC+ ++G++YISRDV FNE
Sbjct: 325 SFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMFSNGRVYISRDVIFNE 384

Query: 106 S 104
           +
Sbjct: 385 T 385



 Score = 22.3 bits (46), Expect(2) = 5e-20
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEY 286
           LH K P E+L+   P+Y
Sbjct: 308 LHHKCPIEVLFKSIPDY 324


>emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]
          Length = 1211

 Score = 99.0 bits (245), Expect(2) = 2e-19
 Identities = 41/66 (62%), Positives = 53/66 (80%)
 Frame = -3

Query: 301 SFSRVSKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTSGKIYISRD 122
           S    S L+ FGCSC+PNL+P+N HKLQ+ S+EC FLGY L HKGY C+S++G++YISRD
Sbjct: 559 SIPBYSFLKVFGCSCFPNLRPYNTHKLQYXSEECTFLGYSLKHKGYXCMSSNGRVYISRD 618

Query: 121 VHFNES 104
           V FNE+
Sbjct: 619 VIFNET 624



 Score = 21.9 bits (45), Expect(2) = 2e-19
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEY 286
           LH K P E+L+   P+Y
Sbjct: 547 LHHKCPIEVLFKSIPBY 563


>emb|CAN66884.1| hypothetical protein VITISV_000961 [Vitis vinifera]
          Length = 685

 Score = 95.5 bits (236), Expect = 7e-18
 Identities = 41/61 (67%), Positives = 50/61 (81%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTSGKIYISRDVHFNE 107
           S L+ FGC+CYPN +PFN HKLQFRS  C F+GY LNHKGYK L ++GK+YISRDV F+E
Sbjct: 357 SFLKVFGCACYPNTRPFNKHKLQFRSTVCTFMGYSLNHKGYKRLDSNGKLYISRDVIFDE 416

Query: 106 S 104
           +
Sbjct: 417 T 417


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1478

 Score = 92.4 bits (228), Expect(2) = 1e-17
 Identities = 41/62 (66%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFN 110
           S LR FGC+C+PNL+P+N+HKLQFRS  CVFLG+   HKG+KCL  S G+IYISRDV F+
Sbjct: 704 SSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFD 763

Query: 109 ES 104
           E+
Sbjct: 764 EN 765



 Score = 22.7 bits (47), Expect(2) = 1e-17
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEYPS 280
           +H  SP E L+   P+Y S
Sbjct: 687 IHNISPLEKLFKQKPDYSS 705


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 92.4 bits (228), Expect(2) = 1e-17
 Identities = 41/62 (66%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFN 110
           S LR FGC+C+PNL+P+N+HKLQFRS  CVFLG+   HKG+KCL  S G+IYISRDV F+
Sbjct: 671 SSLRIFGCACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFD 730

Query: 109 ES 104
           E+
Sbjct: 731 EN 732



 Score = 22.7 bits (47), Expect(2) = 1e-17
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEYPS 280
           +H  SP E L+   P+Y S
Sbjct: 654 IHNISPLEKLFKQKPDYSS 672


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 1313

 Score = 90.9 bits (224), Expect(2) = 3e-17
 Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFN 110
           S LR FGC C+PNL+P+N HKLQFRS +CVFLGY   HKG+KCL  S G++Y+SRDV F+
Sbjct: 524 SVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFD 583

Query: 109 ES 104
           E+
Sbjct: 584 EN 585



 Score = 23.1 bits (48), Expect(2) = 3e-17
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 324 SPFEMLYHHSPEY 286
           +PFE L+H  P+Y
Sbjct: 511 TPFERLFHKQPDY 523


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 969

 Score = 90.9 bits (224), Expect(2) = 3e-17
 Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFN 110
           S LR FGC C+PNL+P+N HKLQFRS +CVFLGY   HKG+KCL  S G++Y+SRDV F+
Sbjct: 524 SVLRIFGCVCWPNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFD 583

Query: 109 ES 104
           E+
Sbjct: 584 EN 585



 Score = 23.1 bits (48), Expect(2) = 3e-17
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 324 SPFEMLYHHSPEY 286
           +PFE L+H  P+Y
Sbjct: 511 TPFERLFHKQPDY 523


>ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488260 [Cicer arietinum]
          Length = 752

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 38/60 (63%), Positives = 49/60 (81%)
 Frame = -3

Query: 280 LRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTSGKIYISRDVHFNESH 101
           L+ FGC+CYP LKP+N HKLQF +  CVFLGY  +HKGYKCL++ G+I++SR V FNE+H
Sbjct: 603 LKPFGCACYPCLKPYNQHKLQFHTTRCVFLGYSNSHKGYKCLNSHGRIFVSRHVVFNENH 662


>ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660325 [Glycine max]
          Length = 868

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 40/61 (65%), Positives = 48/61 (78%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTSGKIYISRDVHFNE 107
           S LR FGCSC+P L+P+N HKL +RS EC+FLGY   HKGYKCL+ +G IYIS+DV F E
Sbjct: 788 SCLRVFGCSCFPFLRPYNSHKLDYRSQECIFLGYSTAHKGYKCLAPNGHIYISKDVLFQE 847

Query: 106 S 104
           S
Sbjct: 848 S 848


>gb|ABA97278.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 642

 Score = 87.8 bits (216), Expect(2) = 5e-17
 Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFN 110
           S LR FGC+C+PNL P+N HKL+FRS  CVFLG+   HKG+KCL  S G++YISRDV F+
Sbjct: 42  SSLRVFGCACWPNLIPYNKHKLEFRSKHCVFLGFSNMHKGFKCLEVSTGRVYISRDVVFD 101

Query: 109 ES 104
           E+
Sbjct: 102 ET 103



 Score = 25.4 bits (54), Expect(2) = 5e-17
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEYPS 280
           +   SP E LYH  P+Y S
Sbjct: 25  IQNMSPLEKLYHQKPDYSS 43


>emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]
          Length = 731

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 39/58 (67%), Positives = 48/58 (82%)
 Frame = -3

Query: 280 LRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTSGKIYISRDVHFNE 107
           L+TFGC+C+P+L+P+N HKLQFRS +C+FLGY   HKGY CL   GKIYISR+V FNE
Sbjct: 92  LKTFGCTCFPHLRPYNSHKLQFRSSKCLFLGYSSTHKGYLCLHPFGKIYISRNVIFNE 149


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 92.0 bits (227), Expect = 7e-17
 Identities = 42/61 (68%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFN 110
           S LR FGC+C+PNL+P+N HKLQFRS  CVFLGY   HKG+KCL  S G+IYISRDV F+
Sbjct: 677 SSLRIFGCACWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFD 736

Query: 109 E 107
           E
Sbjct: 737 E 737


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score = 89.0 bits (219), Expect(2) = 8e-17
 Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = -3

Query: 280 LRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFNES 104
           LR FGC+C+PNL+P+N HKLQFRS  C FLGY   HKG+KCL  S G++YISRDV F+E+
Sbjct: 677 LRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDET 736



 Score = 23.5 bits (49), Expect(2) = 8e-17
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEY 286
           LH  SP E L  H P+Y
Sbjct: 658 LHDVSPLERLLGHKPDY 674


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 39/62 (62%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLS-TSGKIYISRDVHFN 110
           S LR FGC+C+P+L+P+N HKLQFRS +CVFLG+  +HKG+KCL  +SG++YISRDV F+
Sbjct: 677 SSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFD 736

Query: 109 ES 104
           E+
Sbjct: 737 EN 738


>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
           Group] gi|108710062|gb|ABF97857.1| retrotransposon
           protein, putative, Ty1-copia subclass, expressed [Oryza
           sativa Japonica Group]
          Length = 1021

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 40/62 (64%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLS-TSGKIYISRDVHFN 110
           S LRTFGC+C+PNL+P+N+ KLQFRS +CVFLGY   HKG+KCL   +G++YISRDV F+
Sbjct: 592 SSLRTFGCACWPNLRPYNNRKLQFRSKQCVFLGYSNIHKGFKCLDVATGRVYISRDVVFD 651

Query: 109 ES 104
           E+
Sbjct: 652 EN 653


>gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77548933|gb|ABA91730.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1094

 Score = 88.2 bits (217), Expect(2) = 1e-16
 Identities = 38/62 (61%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
 Frame = -3

Query: 286 SKLRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFN 110
           + LR  GC+C+PNL+P+N+HKLQFRS  CVFLG+   HKG+KCL  S G++YISRDV F+
Sbjct: 358 TSLRVLGCACWPNLRPYNNHKLQFRSKRCVFLGFSNMHKGFKCLEVSTGRVYISRDVVFD 417

Query: 109 ES 104
           E+
Sbjct: 418 ET 419



 Score = 23.5 bits (49), Expect(2) = 1e-16
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 336 LHGKSPFEMLYHHSPEYPS 280
           +   SP E L+H  P+Y S
Sbjct: 341 IQNMSPLEKLHHQKPDYTS 359


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 39/59 (66%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
 Frame = -3

Query: 280 LRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLSTS-GKIYISRDVHFNE 107
           LRTFGC+C+PNL+P+N HKLQFRS +CVFLG+   HKG+KCL  S G++Y+SRDV F+E
Sbjct: 666 LRTFGCACWPNLRPYNTHKLQFRSKQCVFLGFSNIHKGFKCLDVSTGRVYVSRDVTFDE 724


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 900

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 40/60 (66%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
 Frame = -3

Query: 280 LRTFGCSCYPNLKPFNHHKLQFRSDECVFLGYILNHKGYKCLS-TSGKIYISRDVHFNES 104
           LRTFGC+C+PNL+P+N HKL FRS +CVFLGY   HKG+KCL   SG++YISRDV F+E+
Sbjct: 111 LRTFGCACWPNLRPYNTHKLAFRSKQCVFLGYSPLHKGFKCLEVNSGRVYISRDVVFDEN 170