BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00019407
         (475 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]         140   2e-31
ref|NP_043933.1| hypothetical protein [Strawberry vein banding v...   139   4e-31
dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus]       98   1e-18
ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57...    97   2e-18
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu...    97   2e-18
dbj|BAO53295.1| reverse transcriptase [Cauliflower mosaic virus]       97   3e-18
gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]        97   3e-18
dbj|BAO53603.1| reverse transcriptase [Cauliflower mosaic virus]       96   4e-18
dbj|BAO53554.1| reverse transcriptase [Cauliflower mosaic virus]       96   4e-18
dbj|BAO53547.1| reverse transcriptase [Cauliflower mosaic virus]       96   4e-18
dbj|BAO53456.1| reverse transcriptase [Cauliflower mosaic virus]       96   4e-18
dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus]       96   4e-18
dbj|BAO53659.1| reverse transcriptase [Cauliflower mosaic virus]       96   5e-18
dbj|BAO53631.1| reverse transcriptase [Cauliflower mosaic virus]       96   5e-18
dbj|BAO53624.1| reverse transcriptase [Cauliflower mosaic virus]       96   5e-18
dbj|BAO53617.1| reverse transcriptase [Cauliflower mosaic virus]       96   5e-18
dbj|BAO53610.1| reverse transcriptase [Cauliflower mosaic virus]       96   5e-18
dbj|BAO53596.1| reverse transcriptase [Cauliflower mosaic virus]       96   5e-18
dbj|BAO53589.1| reverse transcriptase [Cauliflower mosaic virus]       96   5e-18
dbj|BAO53568.1| reverse transcriptase [Cauliflower mosaic virus]       96   5e-18

>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
          Length = 699

 Score =  140 bits (352), Expect = 2e-31
 Identities = 66/106 (62%), Positives = 85/106 (80%), Gaps = 3/106 (2%)
 Frame = +1

Query: 163 FSSDEEIDVEQQSKV---EEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMC 333
           F +DE+ +++Q+ +    EE  ++L  TNPNSIYI+G FYFKGYKKY LD+Y+DTGASMC
Sbjct: 19  FLTDEDFNLQQEDESVESEERFSTLTKTNPNSIYIKGNFYFKGYKKYSLDLYVDTGASMC 78

Query: 334 TANKHVIPEEFWVSAKTPIRAKTANDQIMIMDKVAEQIQVQISGIT 471
           TANKHVIPEEFWV+AK PI+A+ AND I+  +KVAE +QVQI+  T
Sbjct: 79  TANKHVIPEEFWVNAKNPIKARIANDSIITFNKVAELVQVQIADET 124


>ref|NP_043933.1| hypothetical protein [Strawberry vein banding virus]
           gi|1360613|emb|CAA65970.1| ORF V [Strawberry vein
           banding virus]
          Length = 708

 Score =  139 bits (350), Expect = 4e-31
 Identities = 69/102 (67%), Positives = 80/102 (78%)
 Frame = +1

Query: 166 SSDEEIDVEQQSKVEEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANK 345
           + DEE  +E     E F ++L  TNPNSIYIRG FYFKGYKKY LD+Y+DTGASMCTANK
Sbjct: 31  NEDEEQLLESVDSEERF-STLTKTNPNSIYIRGNFYFKGYKKYSLDLYVDTGASMCTANK 89

Query: 346 HVIPEEFWVSAKTPIRAKTANDQIMIMDKVAEQIQVQISGIT 471
           HVIPEEFWV+AK PIRA+ AND IM  +KVAE +QVQI+  T
Sbjct: 90  HVIPEEFWVNAKNPIRARIANDSIMTFNKVAELMQVQIADET 131


>dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 44/80 (55%), Positives = 60/80 (75%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+FYFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRFYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDIDLIIAG 97


>ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57790326|gb|AAW56089.1|
           polyprotein [Horseradish latent virus]
          Length = 679

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 43/80 (53%), Positives = 57/80 (71%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYIRG+ YF GYK   LD ++DTGAS+C A+KHVIPEE W +A   I  K A
Sbjct: 24  MNITNPNSIYIRGRLYFSGYKIVELDCFVDTGASLCIASKHVIPEERWEAAPRKINVKIA 83

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           N+  + +DK+   + + I+G
Sbjct: 84  NESTITLDKICRNLDIIIAG 103


>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName:
           Full=Aspartic protease; Includes: RecName:
           Full=Endonuclease; Includes: RecName: Full=Reverse
           transcriptase
          Length = 679

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 45/93 (48%), Positives = 67/93 (72%)
 Frame = +1

Query: 187 VEQQSKVEEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEF 366
           ++ Q+++E+    +N+TNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE 
Sbjct: 6   LKTQTQIEQV---MNVTNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEH 62

Query: 367 WVSAKTPIRAKTANDQIMIMDKVAEQIQVQISG 465
           WV+A+ PI  K A+   + + KV + I + I+G
Sbjct: 63  WVNAERPIMVKIADGSSITISKVCKDIDLIIAG 95


>dbj|BAO53295.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 46/90 (51%), Positives = 64/90 (71%)
 Frame = +1

Query: 196 QSKVEEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVS 375
           QS+ E+    +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++
Sbjct: 11  QSQTEQV---MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWIN 67

Query: 376 AKTPIRAKTANDQIMIMDKVAEQIQVQISG 465
           A+ PI  K A+   + ++KV   I + I+G
Sbjct: 68  AERPIMVKIADGSSITINKVCRDIDLIIAG 97


>gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 675

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 46/90 (51%), Positives = 64/90 (71%)
 Frame = +1

Query: 196 QSKVEEFIASLNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVS 375
           QS+ E+    +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++
Sbjct: 12  QSQTEQV---MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWIN 68

Query: 376 AKTPIRAKTANDQIMIMDKVAEQIQVQISG 465
           A+ PI  K A+   + ++KV   I + I+G
Sbjct: 69  AERPIMVKIADGSSITINKVCRDIDLIIAG 98


>dbj|BAO53603.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 43/80 (53%), Positives = 60/80 (75%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV + I + I+G
Sbjct: 78  DGSSITINKVCKDIDLIIAG 97


>dbj|BAO53554.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 43/80 (53%), Positives = 60/80 (75%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV + I + I+G
Sbjct: 78  DGSSITINKVCKDIDLIIAG 97


>dbj|BAO53547.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 43/80 (53%), Positives = 60/80 (75%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV + I + I+G
Sbjct: 78  DGSSITINKVCKDIDLIIAG 97


>dbj|BAO53456.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 43/80 (53%), Positives = 60/80 (75%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV + I + I+G
Sbjct: 78  DGSSITINKVCKDIDLIIAG 97


>dbj|BAO53365.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 679

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 44/80 (55%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE WV+A+ PI  K A
Sbjct: 16  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWVNAERPIMVKIA 75

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + + KV + I + I+G
Sbjct: 76  DGSSITISKVCKDIDLIIAG 95


>dbj|BAO53659.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDIDLIIAG 97


>dbj|BAO53631.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDIDLIIAG 97


>dbj|BAO53624.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDIDLIIAG 97


>dbj|BAO53617.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDINLIIAG 97


>dbj|BAO53610.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDIDLIIAG 97


>dbj|BAO53596.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDIDLIIAG 97


>dbj|BAO53589.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDIDLIIAG 97


>dbj|BAO53568.1| reverse transcriptase [Cauliflower mosaic virus]
          Length = 674

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 43/80 (53%), Positives = 59/80 (73%)
 Frame = +1

Query: 226 LNITNPNSIYIRGQFYFKGYKKYGLDMYIDTGASMCTANKHVIPEEFWVSAKTPIRAKTA 405
           +NITNPNSIYI+G+ YFKGYKK  L  ++DTGAS+C A+K VIPEE W++A+ PI  K A
Sbjct: 18  MNITNPNSIYIKGRLYFKGYKKIELHCFVDTGASLCIASKFVIPEEHWINAERPIMVKIA 77

Query: 406 NDQIMIMDKVAEQIQVQISG 465
           +   + ++KV   I + I+G
Sbjct: 78  DGSSITINKVCRDIDLIIAG 97