BLASTX nr result
ID: Cocculus23_contig00019279
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cocculus23_contig00019279 (916 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 288 2e-75 gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 276 1e-71 gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 275 1e-71 gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 274 4e-71 ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 266 1e-68 ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 261 2e-67 ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 259 8e-67 ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 258 2e-66 ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 254 3e-65 ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 246 9e-63 ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 245 2e-62 gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 235 2e-59 ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 231 3e-58 ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 231 3e-58 emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 230 7e-58 ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 229 1e-57 gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 226 1e-56 ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 226 1e-56 ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 221 2e-55 ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr... 220 5e-55 >ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|590697846|ref|XP_007045553.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|590697850|ref|XP_007045554.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] Length = 1109 Score = 288 bits (738), Expect = 2e-75 Identities = 153/267 (57%), Positives = 185/267 (69%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQVS FPS+V AE VK FLE Y GK TVYALKIR K G RA+A+VQFT + Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG---RAYAIVQFTKSTD 57 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A+LI L N+ L YG S LK M NDIVP+PR + ++E + LHFGCQVS EKF VLW+ Sbjct: 58 AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 + VNFG G+RKL+FLL+H VEY+L + Y++IW I+L PRNQ K+LLIQ+ APR Sbjct: 118 EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 IYEK S G P L+YF D +DQWVR DFT S IGQSS +CLELP + P Sbjct: 178 IYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQL-PN 236 Query: 834 IRDNFPYYKEDEGPFYMESGSSFSHSL 914 R+NF YYKE EG F +ESGSS+S +L Sbjct: 237 FRENFAYYKESEGKFVLESGSSYSRNL 263 >gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 276 bits (705), Expect = 1e-71 Identities = 148/267 (55%), Positives = 183/267 (68%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQV GF S VSA VK FLE Y G+ TVYALKIR K G RAFA+VQFT + Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A LI L N+ L YG S LK M DIVP+PRV + ++E + ++FGCQVS+EKF VLWK Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 +NFG G+RKLEFLL++C +YKL++ Y++IW I+LRCP +Q K LLIQ+ APR Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 IYEK + P L+YFKD +DQWVR DFT S IGQSS + LELP N + P Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQL-PN 236 Query: 834 IRDNFPYYKEDEGPFYMESGSSFSHSL 914 R+NF YYKE+EG +ESGSS+S +L Sbjct: 237 FRENFAYYKENEGRLVLESGSSYSCNL 263 >gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 275 bits (704), Expect = 1e-71 Identities = 147/267 (55%), Positives = 182/267 (68%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQV GF S VSA VK FLE Y G+ TVYALKIR K G RAFA+VQFT + Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A LI L N+ L YG S LK M DIVP+PRV + ++E + ++F C VS+EKF VLWK Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 +NFG G+RKLEFLL++C +YKL++ Y++IW I+LRCP +Q K LLIQ+ APR Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 IYEK + P L+YFKD +DQWVR DFT S IGQSS +CLELP N + P Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQL-PN 236 Query: 834 IRDNFPYYKEDEGPFYMESGSSFSHSL 914 R+NF YYKE+EG +ESGSS+S +L Sbjct: 237 FRENFAYYKENEGRLVLESGSSYSCNL 263 >gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] Length = 1133 Score = 274 bits (700), Expect = 4e-71 Identities = 145/267 (54%), Positives = 183/267 (68%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQ+SGFPS VSAE VKEFLE + G+GTVYA+KIR K G R++A+VQF T ++ Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGG--SRSYAIVQFMTVET 58 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A+LI L N L YG S L M DIVP+PR ++ SL+ + LHFGCQ+SKEKF LW+ Sbjct: 59 AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 V+FG GLR+L F LT+ VEY+LQ+ Y+++W I+L PR Q K+LLIQ+L APR Sbjct: 119 VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 +YEK P +YFKD +DQWVRA DFT S IG SSA+ LELP + P Sbjct: 179 VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDL-PD 237 Query: 834 IRDNFPYYKEDEGPFYMESGSSFSHSL 914 +R+NF YYKE E F +ESGSSFS +L Sbjct: 238 LRENFVYYKESEERFILESGSSFSRNL 264 >ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis] Length = 1132 Score = 266 bits (679), Expect = 1e-68 Identities = 140/269 (52%), Positives = 184/269 (68%), Gaps = 2/269 (0%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQV GFP+ V+AE VK+FLE+ G GTVYALK+R K +G+ R +A+VQFTT ++ Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK-KGVGR-LYAIVQFTTKEA 58 Query: 294 ADLITLLINR--HLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVL 467 AD I L R L YG S L M D VPRPR M ++E I LHFGC++S EKF VL Sbjct: 59 ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118 Query: 468 WKRMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAA 647 W+ + VNFGFG+RK+ FLL+H G EY+L++ Y++IW I+L CPR Q K+LLIQ+L A Sbjct: 119 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178 Query: 648 PRIYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESP 827 PRI++K S P ++FK+ +DQWVR DFT S IGQS+ +C+ELP E Sbjct: 179 PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLEL- 237 Query: 828 PQIRDNFPYYKEDEGPFYMESGSSFSHSL 914 P ++NF YYKE E F +E+GS++S SL Sbjct: 238 PDFKENFAYYKESEDRFVLETGSAYSRSL 266 >ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine max] gi|571439308|ref|XP_006574822.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Glycine max] gi|571439310|ref|XP_006574823.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X3 [Glycine max] Length = 1125 Score = 261 bits (668), Expect = 2e-67 Identities = 135/269 (50%), Positives = 184/269 (68%), Gaps = 3/269 (1%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TI++ GFP+SV+ VK F+E Y G+GTV+A+K+R K G RAFA++QFTTA+S Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGK--GRVPRAFAIIQFTTANS 58 Query: 294 ADLITLLIN---RHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCV 464 A + N R LRYG S LK M DIVPRPRV + SL+ + L FGCQ+SK +F V Sbjct: 59 ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118 Query: 465 LWKRMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLA 644 LWK+ +VNFG G+RK+ FL +H V+YKL++SY++IW I+L PRN+ ++LLIQ+L Sbjct: 119 LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLG 178 Query: 645 APRIYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCES 824 APR++E + P ++FKDA ++QW+RAIDFT IGQSSAICLELP N Sbjct: 179 APRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELP-NGRQ 237 Query: 825 PPQIRDNFPYYKEDEGPFYMESGSSFSHS 911 P R+NF YY+E E + +++G FS + Sbjct: 238 LPNFRENFAYYEESERQYTLQTGVPFSQN 266 >ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera] Length = 1121 Score = 259 bits (663), Expect = 8e-67 Identities = 140/268 (52%), Positives = 180/268 (67%), Gaps = 1/268 (0%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 M +TIQV GFPS VSA+ +KEFLE Y G+GT+ AL+I+ + R A VQFT+ + Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIK--QPRSGASMTHAKVQFTSFEL 58 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A+ I L + + YG + LK M DI+P+PR + S++ I LHFGCQ+S E+FCVLWK Sbjct: 59 AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 + V FG GLRK F L+H EYKL++SY++IW IQL+ PR Q KFLLIQ+L AP+ Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178 Query: 654 IYEKPQCSIGQTNGYPTLD-YFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPP 830 IYEK P L YFK+A +DQWVR IDFT S IGQS A+CLELP + P Sbjct: 179 IYEK---------DVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQL-P 228 Query: 831 QIRDNFPYYKEDEGPFYMESGSSFSHSL 914 R+NF YYKE++G F +ESGSS+SH+L Sbjct: 229 NFRENFAYYKENDGKFILESGSSYSHNL 256 >ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus] gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus] Length = 1130 Score = 258 bits (660), Expect = 2e-66 Identities = 138/265 (52%), Positives = 183/265 (69%), Gaps = 1/265 (0%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TI +SGFPS V+A+ VK FLE + G GTVYA+K+R K G R +A+VQFT+A Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTSATQ 58 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A+LI L N+ L YG S LK A DIVP+PR M +LE + L FGCQVS EKF VLW+ Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 +V FG G+RK+ F L + VEY+L++SY+ IW IQL CPR+Q+ K+LLIQ+ APR Sbjct: 119 GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPR 178 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 IY+K + GQ P L++FK+A +DQWVR DFT+S SIGQSS++CL+LP + PP Sbjct: 179 IYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP- 237 Query: 834 IRDNFPYYKEDEGPF-YMESGSSFS 905 + NF YY+E E F ++ ++FS Sbjct: 238 FKQNFAYYEEFEHEFRLIDEDANFS 262 >ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] gi|548853371|gb|ERN11375.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] Length = 1210 Score = 254 bits (650), Expect = 3e-65 Identities = 137/268 (51%), Positives = 179/268 (66%), Gaps = 2/268 (0%) Frame = +3 Query: 117 GRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADSA 296 GRT+QVSGFP AE VK+FLE+ G GTVY LKIR+ K + R FA+VQFTT+ SA Sbjct: 75 GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKP-NSRVFAIVQFTTSKSA 133 Query: 297 DLITLLIN--RHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLW 470 ++I L + L +G S + V M NDIVP PRV+ LE I L+FG Q+S+E F +LW Sbjct: 134 EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193 Query: 471 KRMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAP 650 V FGFGL+K+ F L H GV+YKL + Y++IW IQLR P + ++L++Q+ AP Sbjct: 194 SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAP 253 Query: 651 RIYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPP 830 RI++KP P +Y+KD ++QWVR+IDFT S SIGQSS++CL LP N P Sbjct: 254 RIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALP-NGTRIP 312 Query: 831 QIRDNFPYYKEDEGPFYMESGSSFSHSL 914 IR+NF YYKE G F +++GSSFSHSL Sbjct: 313 NIRENFAYYKEIGGAFNLKTGSSFSHSL 340 >ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera] Length = 1109 Score = 246 bits (628), Expect = 9e-63 Identities = 140/267 (52%), Positives = 177/267 (66%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQV G PS+VSA +KEFLE Y G+GT+ AL+I+ K G+ A VQFT+ Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPK-SGVSM-THAKVQFTSLRL 58 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A+LI L + L YG + LK M DI+P+PR + S++ I LHFG Q+S E+FCVLWK Sbjct: 59 AELIISLA-KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 + V FGFGLRK F L+H EYKL++S ++IW IQLR PR QN KFLLIQ+L AP+ Sbjct: 118 AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 IYEK L YFK+ +DQWVR IDFT S SIGQSSA+CLELP + P Sbjct: 178 IYEK---------DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQL-PN 227 Query: 834 IRDNFPYYKEDEGPFYMESGSSFSHSL 914 +NF YKE++ F +ESG+SFS +L Sbjct: 228 FCENFARYKENDRKFILESGASFSGNL 254 >ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa] gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa] Length = 1133 Score = 245 bits (625), Expect = 2e-62 Identities = 129/266 (48%), Positives = 171/266 (64%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 M +T++VSGFPSS +A V+ FLE++ G GTV ALKIR + G R +A+VQFTT + Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A+ I L N L YG S L M DI+P+PR + ++E + LHFG Q SKEKF +W Sbjct: 59 AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 VNFG G+RKL F L+H EYKL + +++IW I+L PR Q K+LLIQ+ APR Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 IYE+ S P L+YF+D ++QWVR DFT S IG SS++CLELP + + P Sbjct: 179 IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQL-PN 237 Query: 834 IRDNFPYYKEDEGPFYMESGSSFSHS 911 +NF YYKE+EG F +ESG +FS + Sbjct: 238 FNENFFYYKENEGTFVLESGLTFSRN 263 >gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus] Length = 1110 Score = 235 bits (600), Expect = 2e-59 Identities = 131/266 (49%), Positives = 164/266 (61%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MGRTIQV GFP V+AE+VK+FLENY G+GTV AL+++ KV RRA+A VQFT Sbjct: 1 MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVG---RRAYARVQFTNIRC 57 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A+ I L L YG S LK + DIV PR +E + L+FGCQ+S KF VLWK Sbjct: 58 AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 V FG G++K+ F L H VEYK+Q+SY++IW I L Q+ K L+IQ+ APR Sbjct: 118 GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPR 177 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 IY+K S+ YF +DQWVR DFT S IGQSS++CL+LP P Sbjct: 178 IYKKLSGSV--------YSYFMVTQDDQWVRTTDFTQSL-IGQSSSLCLQLPYGMRL-PN 227 Query: 834 IRDNFPYYKEDEGPFYMESGSSFSHS 911 RDNF YYKE E PF +E+G FSH+ Sbjct: 228 FRDNFLYYKESETPFRLETGVPFSHN 253 >ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer arietinum] Length = 1100 Score = 231 bits (589), Expect = 3e-58 Identities = 125/271 (46%), Positives = 179/271 (66%), Gaps = 6/271 (2%) Frame = +3 Query: 120 RTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADSAD 299 +TI++ GFP+SV VK F+E + G+G+V A+KIR K R +RA+A++QF TA+ A Sbjct: 5 KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKAR--VQRAYAIIQFNTANQAT 62 Query: 300 LITLLINRH---LRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLW 470 + L NR LRYG S LK+ M DIVP PR + SL+ + L+FGCQ+SKE+F +LW Sbjct: 63 HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122 Query: 471 KRMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAP 650 ++ V+ G+RK F + H ++K +SY++IW I+ P + K+LLIQ++ AP Sbjct: 123 RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAP 182 Query: 651 RIYEKPQCSIGQTNGY--PTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCES 824 RI+E + TN Y P +YFK++ +DQW+RA+DFT IGQSSAICLELP C+ Sbjct: 183 RIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELP--CDR 240 Query: 825 P-PQIRDNFPYYKEDEGPFYMESGSSFSHSL 914 P IR+ F +Y+E+EG + +ESGS FSH+L Sbjct: 241 DFPNIREYFVHYQENEGQYTLESGSPFSHNL 271 >ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer arietinum] Length = 1126 Score = 231 bits (589), Expect = 3e-58 Identities = 125/271 (46%), Positives = 179/271 (66%), Gaps = 6/271 (2%) Frame = +3 Query: 120 RTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADSAD 299 +TI++ GFP+SV VK F+E + G+G+V A+KIR K R +RA+A++QF TA+ A Sbjct: 5 KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKAR--VQRAYAIIQFNTANQAT 62 Query: 300 LITLLINRH---LRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLW 470 + L NR LRYG S LK+ M DIVP PR + SL+ + L+FGCQ+SKE+F +LW Sbjct: 63 HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122 Query: 471 KRMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAP 650 ++ V+ G+RK F + H ++K +SY++IW I+ P + K+LLIQ++ AP Sbjct: 123 RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAP 182 Query: 651 RIYEKPQCSIGQTNGY--PTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCES 824 RI+E + TN Y P +YFK++ +DQW+RA+DFT IGQSSAICLELP C+ Sbjct: 183 RIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELP--CDR 240 Query: 825 P-PQIRDNFPYYKEDEGPFYMESGSSFSHSL 914 P IR+ F +Y+E+EG + +ESGS FSH+L Sbjct: 241 DFPNIREYFVHYQENEGQYTLESGSPFSHNL 271 >emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri] Length = 1107 Score = 230 bits (586), Expect = 7e-58 Identities = 124/266 (46%), Positives = 170/266 (63%), Gaps = 2/266 (0%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R FA+VQFT Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNERY 58 Query: 294 A-DLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLW 470 A +IT R L YG S L + + DIVP+PR S+ ++ + ++FGCQVS +KF LW Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118 Query: 471 KRMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAP 650 V+FG G+RKL F + +Y+L++SY++IW I L P+ ++ KFL+IQV+ AP Sbjct: 119 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178 Query: 651 RIYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPP 830 +I+EK I G +D++ D ++QW+R DFT+S IGQS+A CLELP + + P Sbjct: 179 KIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHL-NVP 235 Query: 831 QIRDNFPYYKEDE-GPFYMESGSSFS 905 R+NF Y E PF +ESGSS+S Sbjct: 236 DFRENFANYAEHRASPFLIESGSSYS 261 >ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp. vesca] Length = 1119 Score = 229 bits (583), Expect = 1e-57 Identities = 123/266 (46%), Positives = 172/266 (64%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQ+ GFPS +AE +KEFLE + G+G+V+ALK+R K G R +A++QF + Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGG---RFYAIIQFQSISQ 57 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A+ I L N L YG S L +DIVP+PR + SL + LH GCQV+K+KF VLW Sbjct: 58 AEKIISLANARLWYGRSYLNA-RPAHDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 V+FGFG+R L+F L + Y+LQ+SY++IW I+L R ++ K+L+IQ+ PR Sbjct: 117 TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPR 176 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 IY++ CS G NGY ++YF+D D WVR DFT IGQSS++CL L + E P Sbjct: 177 IYQQEVCSSG-GNGYEDMNYFRDP--DDWVRTTDFTPGSCIGQSSSLCLVLTSDGEL-PD 232 Query: 834 IRDNFPYYKEDEGPFYMESGSSFSHS 911 +NF YYK+ +G F +E+GS+FS + Sbjct: 233 FEENFAYYKKTDGQFILENGSTFSRN 258 >gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] Length = 1107 Score = 226 bits (575), Expect = 1e-56 Identities = 121/265 (45%), Positives = 167/265 (63%), Gaps = 1/265 (0%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R +A+VQFT+ Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 LI L YG S LK + + DIVP+PR S+ ++ + + FGCQVS +KF LW Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 V+FG G+RKL F + +Y+L++SY++IW I L P+ ++ KFL+IQV+ AP+ Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 I+EK I G +D++ D ++QW+R DFT+S IGQS+A CLELP + + P Sbjct: 179 IFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHL-NVPD 235 Query: 834 IRDNFPYYKEDE-GPFYMESGSSFS 905 R+NF Y E F +ESGSS+S Sbjct: 236 FRENFANYAEHRASSFLIESGSSYS 260 >ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName: Full=RNA-directed RNA polymerase 1 gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana] Length = 1107 Score = 226 bits (575), Expect = 1e-56 Identities = 121/265 (45%), Positives = 167/265 (63%), Gaps = 1/265 (0%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R +A+VQFT+ Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 LI L YG S LK + + DIVP+PR S+ ++ + + FGCQVS +KF LW Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 V+FG G+RKL F + +Y+L++SY++IW I L P+ ++ KFL+IQV+ AP+ Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 I+EK I G +D++ D ++QW+R DFT+S IGQS+A CLELP + + P Sbjct: 179 IFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHL-NVPD 235 Query: 834 IRDNFPYYKEDE-GPFYMESGSSFS 905 R+NF Y E F +ESGSS+S Sbjct: 236 FRENFANYAEHRASSFLIESGSSYS 260 >ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata] Length = 1107 Score = 221 bits (564), Expect = 2e-55 Identities = 121/266 (45%), Positives = 167/266 (62%), Gaps = 2/266 (0%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R FA+VQFT Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNEIY 58 Query: 294 A-DLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLW 470 A +IT R L YG S L + + DIVP+PR S+ ++ + ++FGCQVS + LW Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLW 118 Query: 471 KRMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAP 650 V+FG G+RKL F + +Y+L++SY++IW I L P+ ++ KFL+IQV+ AP Sbjct: 119 SAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178 Query: 651 RIYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPP 830 +I+EK I G +D++ D ++QW+R DFT+S IGQS+A CLELP + + P Sbjct: 179 KIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHL-NVP 235 Query: 831 QIRDNFPYYKEDEGPFYM-ESGSSFS 905 R+NF Y E Y+ ESGSS+S Sbjct: 236 DFRENFANYAEHRASTYLIESGSSYS 261 >ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum] gi|557094740|gb|ESQ35322.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum] Length = 1108 Score = 220 bits (561), Expect = 5e-55 Identities = 120/265 (45%), Positives = 163/265 (61%), Gaps = 1/265 (0%) Frame = +3 Query: 114 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRLCKVRGLQRRAFAVVQFTTADS 293 MG+TI+V GFP VS E VK FLE G GTVYA+K+R K G R +A+VQFT Sbjct: 1 MGKTIRVFGFPGGVSGEEVKNFLERETGSGTVYAIKVRQPKKGG--PRVYAIVQFTNERH 58 Query: 294 ADLITLLINRHLRYGISNLKVWAMGNDIVPRPRVSMLSLEVIALHFGCQVSKEKFCVLWK 473 A I L YG S LK + DIVP+PR S+ + + ++FGCQV+ +K VLW Sbjct: 59 ARWIITRAEEGLYYGRSYLKASEVEQDIVPKPRASLHKISDLKIYFGCQVTPKKLSVLWS 118 Query: 474 RMGAVVNFGFGLRKLEFLLTHCGVEYKLQISYKSIWAIQLRCPRNQNKKFLLIQVLAAPR 653 V+FG G+RKL F ++ +Y+L++ Y++IW I L P+ + KFL+IQV+ AP+ Sbjct: 119 AQNVCVSFGTGMRKLHFSISWYEKDYRLELPYENIWRIDLYSPQGRASKFLVIQVIGAPK 178 Query: 654 IYEKPQCSIGQTNGYPTLDYFKDAMNDQWVRAIDFTTSYSIGQSSAICLELPQNCESPPQ 833 I+EK + G LD+F D ++QW+R DFT+S IGQSS+ CLELP+ + P Sbjct: 179 IFEKEDQPVNLLFG--MLDFFSDGSDEQWIRTTDFTSSSCIGQSSSFCLELPRQL-NVPD 235 Query: 834 IRDNFPYYKEDE-GPFYMESGSSFS 905 R+NF Y E E G F +ESGSS+S Sbjct: 236 FRENFANYAEHEAGTFLIESGSSYS 260