BLASTX nr result
ID: Cocculus23_contig00019278
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00019278
(591 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 209 6e-52
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 203 3e-50
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 196 5e-48
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 195 9e-48
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 194 1e-47
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 194 2e-47
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 191 1e-46
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 188 1e-45
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 188 1e-45
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 182 8e-44
gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japo... 177 1e-42
gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indi... 176 4e-42
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 173 3e-41
gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare] 171 1e-40
gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare su... 171 1e-40
ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Popu... 166 4e-39
gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare] 166 6e-39
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 165 1e-38
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 164 1e-38
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 164 1e-38
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 209 bits (531), Expect = 6e-52
Identities = 106/196 (54%), Positives = 135/196 (68%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQ 410
+A+VQFT + A+LI L N+ L YG S LK +ENDIVPKPR + ++E + LHFGCQ
Sbjct: 47 YAIVQFTKSTDAELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQ 106
Query: 409 VSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKK 230
VSNEKF VLW+ V V VNFG G+RKL+FLL+H VEY+L++ +++I +I+L PRNQ K
Sbjct: 107 VSNEKFYVLWEEVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSK 166
Query: 229 FLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAICL 50
+LLIQ+ APRIYEK G P L+YF +DQWVR DFT S IGQSS +CL
Sbjct: 167 YLLIQLFGAPRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCL 226
Query: 49 ELPQNCEFPPQIRDNF 2
ELP + P R+NF
Sbjct: 227 ELPYYLQL-PNFRENF 241
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 203 bits (517), Expect = 3e-50
Identities = 106/196 (54%), Positives = 139/196 (70%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQ 410
+A+VQFT+A +A+LI SL N+ L YG S LK A E DIVPKPR M +LE + L FGCQ
Sbjct: 48 YAIVQFTSATQAELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQ 107
Query: 409 VSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKK 230
VS EKF VLW+ +V FG G+RK+ F L ++ VEY+LE+S++ I +IQL CPR+Q+ K
Sbjct: 108 VSTEKFRVLWEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMK 167
Query: 229 FLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAICL 50
+LLIQ+ APRIY+K GQ P L++FK A +DQWVR DFT+S SIGQSS++CL
Sbjct: 168 YLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCL 227
Query: 49 ELPQNCEFPPQIRDNF 2
+LP + PP + NF
Sbjct: 228 KLPNGRQLPP-FKQNF 242
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 196 bits (497), Expect = 5e-48
Identities = 102/198 (51%), Positives = 132/198 (66%), Gaps = 2/198 (1%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINR--HLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFG 416
+A+VQFTT E AD I SL R L YG S L +E D VP+PR M ++E I LHFG
Sbjct: 48 YAIVQFTTKEAADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFG 107
Query: 415 CQVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQN 236
C++SNEKF VLW+ V V VNFGFG+RK+ FLL+H G EY+LE+ +++I EI+L CPR Q
Sbjct: 108 CKISNEKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQM 167
Query: 235 KKFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAI 56
K+LLIQ+L APRI++K P ++FK +DQWVR DFT S IGQS+ +
Sbjct: 168 TKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGL 227
Query: 55 CLELPQNCEFPPQIRDNF 2
C+ELP E P ++NF
Sbjct: 228 CMELPYRLEL-PDFKENF 244
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 195 bits (495), Expect = 9e-48
Identities = 103/196 (52%), Positives = 131/196 (66%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQ 410
FA+VQFT + A LI L N+ L YG S LK +E DIVPKPRV + ++E + ++FGCQ
Sbjct: 47 FAIVQFTRSSDAGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQ 106
Query: 409 VSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKK 230
VS EKF VLWK V +NFG G+RKLEFLL++ +YKLE+ +++I +I+LRCP +Q K
Sbjct: 107 VSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSK 166
Query: 229 FLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAICL 50
LLIQ+ APRIYEK P L+YFK +DQWVR DFT S IGQSS + L
Sbjct: 167 HLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWL 226
Query: 49 ELPQNCEFPPQIRDNF 2
ELP N + P R+NF
Sbjct: 227 ELPHNLQL-PNFRENF 241
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 194 bits (494), Expect = 1e-47
Identities = 102/196 (52%), Positives = 130/196 (66%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQ 410
FA+VQFT + A LI L N+ L YG S LK +E DIVPKPRV + ++E + ++F C
Sbjct: 47 FAIVQFTRSSDAGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCH 106
Query: 409 VSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKK 230
VS EKF VLWK V +NFG G+RKLEFLL++ +YKLE+ +++I +I+LRCP +Q K
Sbjct: 107 VSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSK 166
Query: 229 FLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAICL 50
LLIQ+ APRIYEK P L+YFK +DQWVR DFT S IGQSS +CL
Sbjct: 167 HLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCL 226
Query: 49 ELPQNCEFPPQIRDNF 2
ELP N + P R+NF
Sbjct: 227 ELPHNLQL-PNFRENF 241
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 194 bits (492), Expect = 2e-47
Identities = 99/199 (49%), Positives = 134/199 (67%), Gaps = 3/199 (1%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLIN---RHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHF 419
FA++QFTTA A + S N R LRYG S LK +E DIVP+PRV + SL+ + L F
Sbjct: 48 FAIIQFTTANSATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSF 107
Query: 418 GCQVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQ 239
GCQ+S +F VLWK+ V+VNFG G+RK+ FL +H V+YKLE+S+++I +I+L PRN+
Sbjct: 108 GCQISKGRFSVLWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNE 167
Query: 238 NKKFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSA 59
++LLIQ+L APR++E P ++FK A ++QW+RAIDFT IGQSSA
Sbjct: 168 TTRYLLIQLLGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSA 227
Query: 58 ICLELPQNCEFPPQIRDNF 2
ICLELP + P R+NF
Sbjct: 228 ICLELPNGRQL-PNFRENF 245
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 191 bits (485), Expect = 1e-46
Identities = 104/188 (55%), Positives = 127/188 (67%)
Frame = -3
Query: 586 AVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQV 407
A VQFT+ A+LI SL + L YG + LK ++ DI+PKPR + S++ I LHFG Q+
Sbjct: 49 AKVQFTSLRLAELIISLA-KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQM 107
Query: 406 SNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKKF 227
SNE+FCVLWK + V V FGFGLRK F L+H EYKLE+S ++I +IQLR PR QN KF
Sbjct: 108 SNERFCVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKF 167
Query: 226 LLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAICLE 47
LLIQ+L AP+IYEK L YFK +DQWVR IDFT S SIGQSSA+CLE
Sbjct: 168 LLIQLLDAPQIYEK---------DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLE 218
Query: 46 LPQNCEFP 23
LP + P
Sbjct: 219 LPHGSQLP 226
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 188 bits (477), Expect = 1e-45
Identities = 97/196 (49%), Positives = 128/196 (65%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQ 410
+A+VQF T E A+LI L N L YG S L +E DIVPKPR ++ SL+ + LHFGCQ
Sbjct: 48 YAIVQFMTVETAELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQ 107
Query: 409 VSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKK 230
+S EKF LW+ V V+FG GLR+L F LT+ VEY+L++ ++++ +I+L PR Q K
Sbjct: 108 ISKEKFSFLWRVGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAK 167
Query: 229 FLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAICL 50
+LLIQ+L APR+YEK P +YFK +DQWVRA DFT S IG SSA+ L
Sbjct: 168 YLLIQLLGAPRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYL 227
Query: 49 ELPQNCEFPPQIRDNF 2
ELP + P +R+NF
Sbjct: 228 ELPYGVDL-PDLRENF 242
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 188 bits (477), Expect = 1e-45
Identities = 102/196 (52%), Positives = 131/196 (66%), Gaps = 1/196 (0%)
Frame = -3
Query: 586 AVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQV 407
A VQFT+ E A+ I +L + + YG + LK ++ DI+PKPR + S++ I LHFGCQ+
Sbjct: 49 AKVQFTSFELAEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQM 108
Query: 406 SNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKKF 227
S+E+FCVLWK + V V FG GLRK F L+H EYKLE+S+++I +IQL+ PR Q KF
Sbjct: 109 SDERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKF 168
Query: 226 LLIQVLAAPRIYEKPQCFMGQTNGYPTLD-YFKGAVNDQWVRAIDFTTSYSIGQSSAICL 50
LLIQ+L AP+IYEK P L YFK A +DQWVR IDFT S IGQS A+CL
Sbjct: 169 LLIQLLGAPQIYEK---------DVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCL 219
Query: 49 ELPQNCEFPPQIRDNF 2
ELP + P R+NF
Sbjct: 220 ELPYGSQL-PNFRENF 234
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 182 bits (461), Expect = 8e-44
Identities = 94/198 (47%), Positives = 132/198 (66%), Gaps = 2/198 (1%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLIN--RHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFG 416
FA+VQFTT++ A++I SL + L +G S + V +ENDIVP PRV+ LE I L+FG
Sbjct: 122 FAIVQFTTSKSAEVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFG 181
Query: 415 CQVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQN 236
Q+S E F +LW V V FGFGL+K+ F L H GV+YKL++ +++I +IQLR P +
Sbjct: 182 NQISEESFAILWSNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEG 241
Query: 235 KKFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAI 56
++L++Q+ APRI++KP F P +Y+K ++QWVR+IDFT S SIGQSS++
Sbjct: 242 TRYLVLQMQGAPRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSL 301
Query: 55 CLELPQNCEFPPQIRDNF 2
CL LP P IR+NF
Sbjct: 302 CLALPNGTRI-PNIRENF 318
>gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 177 bits (450), Expect = 1e-42
Identities = 98/199 (49%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRH-LRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGC 413
+A+VQF T E A L+ + R LR G LKV + DIVP+PRVSM LE + LHFGC
Sbjct: 51 YAIVQFQTEEHASLVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGC 110
Query: 412 QVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLT--HRGVEYKLEISHKSIMEIQLRCPRNQ 239
+ LW R GV V FGF L+K+ F L + +EYKLE+SH+SI EIQL+ P
Sbjct: 111 LLKETILSALWSRKGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSHESIWEIQLQRPPKS 170
Query: 238 NKKFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSA 59
KFLLIQV AAP+IYE+ G P +YF+ +DQW R DFT+S SIGQS
Sbjct: 171 QTKFLLIQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYI 230
Query: 58 ICLELPQNCEFPPQIRDNF 2
+CLE+P+ C+ P IRD F
Sbjct: 231 LCLEVPRRCDL-PNIRDYF 248
>gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 176 bits (446), Expect = 4e-42
Identities = 97/199 (48%), Positives = 123/199 (61%), Gaps = 3/199 (1%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRH-LRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGC 413
+A+VQF T E A L+ + R LR G LKV + DIVP+PRVSM LE + LHFGC
Sbjct: 51 YAIVQFQTEEHASLVKNAAQRKILRRGHYYLKVHPSDRDIVPRPRVSMFKLEDVTLHFGC 110
Query: 412 QVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLT--HRGVEYKLEISHKSIMEIQLRCPRNQ 239
+ LW R GV V FGF L+K+ F L + +EYKLE+S++SI EIQL+ P
Sbjct: 111 LLKETILSALWSRTGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWEIQLQRPPKS 170
Query: 238 NKKFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSA 59
KFLLIQV AAP+IYE+ G P +YF+ +DQW R DFT+S SIGQS
Sbjct: 171 QTKFLLIQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYI 230
Query: 58 ICLELPQNCEFPPQIRDNF 2
+CLE+P+ C+ P IRD F
Sbjct: 231 LCLEVPRRCDL-PNIRDYF 248
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 173 bits (439), Expect = 3e-41
Identities = 89/196 (45%), Positives = 120/196 (61%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQ 410
+A+VQFTT A+ I SL N L YG S L ++ DI+P+PR + ++E + LHFG Q
Sbjct: 48 YAIVQFTTTRAAEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQ 107
Query: 409 VSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKK 230
S EKF +W V VNFG G+RKL F L+H EYKL + ++I +I+L PR Q K
Sbjct: 108 TSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVK 167
Query: 229 FLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAICL 50
+LLIQ+ APRIYE+ P L+YF+ ++QWVR DFT S IG SS++CL
Sbjct: 168 YLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCL 227
Query: 49 ELPQNCEFPPQIRDNF 2
ELP + + P +NF
Sbjct: 228 ELPNHLQL-PNFNENF 242
>gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 171 bits (433), Expect = 1e-40
Identities = 92/197 (46%), Positives = 121/197 (61%), Gaps = 1/197 (0%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRH-LRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGC 413
FA+VQF T A L+ + + LR G + LKV E DI+ KPR ++ +LE LHFGC
Sbjct: 51 FAIVQFETEAHASLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGC 110
Query: 412 QVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNK 233
+ VLW GV V FGF ++K++F LT+ +YKLE+S++SI EIQL P K
Sbjct: 111 LLRERVLSVLWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQK 170
Query: 232 KFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAIC 53
KFLLIQV+AAP+IYE+ G P +YF+ +DQW R DFT SIGQS +C
Sbjct: 171 KFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILC 230
Query: 52 LELPQNCEFPPQIRDNF 2
LELP +C + P IR+ F
Sbjct: 231 LELPADC-YLPNIREYF 246
>gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 171 bits (433), Expect = 1e-40
Identities = 92/197 (46%), Positives = 121/197 (61%), Gaps = 1/197 (0%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRH-LRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGC 413
FA+VQF T A L+ + + LR G + LKV E DI+ KPR ++ +LE LHFGC
Sbjct: 51 FAIVQFETEAHASLVVNAARGNALRSGSNYLKVRPAERDIILKPRTALFNLEDATLHFGC 110
Query: 412 QVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNK 233
+ VLW GV V FGF ++K++F LT+ +YKLE+S++SI EIQL P K
Sbjct: 111 LLRERVLSVLWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQK 170
Query: 232 KFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAIC 53
KFLLIQV+AAP+IYE+ G P +YF+ +DQW R DFT SIGQS +C
Sbjct: 171 KFLLIQVMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILC 230
Query: 52 LELPQNCEFPPQIRDNF 2
LELP +C + P IR+ F
Sbjct: 231 LELPADC-YLPNIREYF 246
>ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
gi|550329580|gb|EEF02020.2| hypothetical protein
POPTR_0010s11560g [Populus trichocarpa]
Length = 1119
Score = 166 bits (420), Expect = 4e-39
Identities = 96/199 (48%), Positives = 125/199 (62%), Gaps = 4/199 (2%)
Frame = -3
Query: 586 AVVQFTTAERADLIT--SLINRHLRYGVSNLKVWAVENDIVPKPRV--SMLSLEVIALHF 419
A+V+FTT+E A I SL + L YG S LK V D VP + + S++ I LHF
Sbjct: 49 AIVEFTTSEAAQNIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSMDNITLHF 108
Query: 418 GCQVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQ 239
GCQVS EKF VLW + V V FG LRK F LTH YKLE+S+++I +I+L PR +
Sbjct: 109 GCQVSKEKFSVLWTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGK 168
Query: 238 NKKFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSA 59
KK+LL+Q+L P+I++K TN L FK A +DQWVR +DF+ SY IGQSSA
Sbjct: 169 TKKYLLVQMLGGPKIFKK------DTN---KLSNFKEATDDQWVRDVDFSPSYCIGQSSA 219
Query: 58 ICLELPQNCEFPPQIRDNF 2
+CLELP N + P ++NF
Sbjct: 220 LCLELPPNSQL-PNFQENF 237
>gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 166 bits (419), Expect = 6e-39
Identities = 89/197 (45%), Positives = 118/197 (59%), Gaps = 1/197 (0%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRH-LRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGC 413
FA+VQF + A L+ + R+ LR G LK E DIVP+PR ++ +L+ LHFGC
Sbjct: 51 FAIVQFQSEAHASLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQGAKLHFGC 110
Query: 412 QVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNK 233
+ VLW V V FGF +++++F L + +YKLE+S++SI EIQL P K
Sbjct: 111 LLKERVLSVLWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQK 170
Query: 232 KFLLIQVLAAPRIYEKPQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSAIC 53
KFLLIQV AAP+IYE+ G P +YF+ +DQW R DFT S SIGQS +C
Sbjct: 171 KFLLIQVQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILC 230
Query: 52 LELPQNCEFPPQIRDNF 2
LELP C + P IR+ F
Sbjct: 231 LELPHIC-YLPNIREYF 246
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 165 bits (417), Expect = 1e-38
Identities = 86/199 (43%), Positives = 127/199 (63%), Gaps = 3/199 (1%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRHLRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHFGCQ 410
FA+VQFT+ A LI ++ L YG S LK + +E DIVPKPR S+ S+ + ++FGCQ
Sbjct: 48 FAIVQFTSERHARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQ 107
Query: 409 VSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQNKK 230
VS +K LW V V+FG G+RKL F ++ +Y+LE+S+++I +I L P+ + K
Sbjct: 108 VSPKKLLTLWSAHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSK 167
Query: 229 FLLIQVLAAPRIYEK---PQCFMGQTNGYPTLDYFKGAVNDQWVRAIDFTTSYSIGQSSA 59
FL+IQV+ AP+I+EK P F+ + +D++ ++QW+R DFT+S IGQS+A
Sbjct: 168 FLVIQVIGAPKIFEKEDQPVNFL-----FGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTA 222
Query: 58 ICLELPQNCEFPPQIRDNF 2
CLELP + P R+NF
Sbjct: 223 FCLELPVHVHV-PDFRENF 240
>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
arietinum]
Length = 1100
Score = 164 bits (416), Expect = 1e-38
Identities = 89/201 (44%), Positives = 130/201 (64%), Gaps = 5/201 (2%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRH---LRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHF 419
+A++QF TA +A + SL NR LRYG S LK+ + DIVP PR + SL+ + L+F
Sbjct: 50 YAIIQFNTANQATHMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYF 109
Query: 418 GCQVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQ 239
GCQ+S E+F +LW++ V V+ G+RK F + H ++K ++S+++I +I+ P +
Sbjct: 110 GCQISKERFSILWRKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGK 169
Query: 238 NKKFLLIQVLAAPRIYEKPQCFMGQTNGY--PTLDYFKGAVNDQWVRAIDFTTSYSIGQS 65
K+LLIQ++ APRI+E TN Y P +YFK + +DQW+RA+DFT IGQS
Sbjct: 170 TAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQS 229
Query: 64 SAICLELPQNCEFPPQIRDNF 2
SAICLELP + +F P IR+ F
Sbjct: 230 SAICLELPCDRDF-PNIREYF 249
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 164 bits (416), Expect = 1e-38
Identities = 89/201 (44%), Positives = 130/201 (64%), Gaps = 5/201 (2%)
Frame = -3
Query: 589 FAVVQFTTAERADLITSLINRH---LRYGVSNLKVWAVENDIVPKPRVSMLSLEVIALHF 419
+A++QF TA +A + SL NR LRYG S LK+ + DIVP PR + SL+ + L+F
Sbjct: 50 YAIIQFNTANQATHMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYF 109
Query: 418 GCQVSNEKFCVLWKRVGVVVNFGFGLRKLEFLLTHRGVEYKLEISHKSIMEIQLRCPRNQ 239
GCQ+S E+F +LW++ V V+ G+RK F + H ++K ++S+++I +I+ P +
Sbjct: 110 GCQISKERFSILWRKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGK 169
Query: 238 NKKFLLIQVLAAPRIYEKPQCFMGQTNGY--PTLDYFKGAVNDQWVRAIDFTTSYSIGQS 65
K+LLIQ++ APRI+E TN Y P +YFK + +DQW+RA+DFT IGQS
Sbjct: 170 TAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQS 229
Query: 64 SAICLELPQNCEFPPQIRDNF 2
SAICLELP + +F P IR+ F
Sbjct: 230 SAICLELPCDRDF-PNIREYF 249