BLASTX nr result
ID: Cocculus23_contig00019277
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00019277
(1204 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 398 e-108
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 372 e-100
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 366 9e-99
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 366 1e-98
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 365 2e-98
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 363 8e-98
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 355 2e-95
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 350 9e-94
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 348 2e-93
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 341 3e-91
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 341 4e-91
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 333 7e-89
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 333 7e-89
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 333 7e-89
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 328 2e-87
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 328 2e-87
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 323 1e-85
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 323 1e-85
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 321 3e-85
ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Popu... 321 5e-85
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 398 bits (1022), Expect = e-108
Identities = 204/353 (57%), Positives = 248/353 (70%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQVS FPS+V E VK FLE+ G+ TVYALKIR K G R +AIVQFT +
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG---RAYAIVQFTKSTD 57
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A+L+ L NQ L YG LK E NDIVPKPR + ++E + LHFGCQVS EKFYVLW+
Sbjct: 58 AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
V VNFG G+RKL+FLL+H VEY+L++ Y++IW I+L PRNQ+ K+LLIQ+ P+
Sbjct: 118 EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
IYEK S G P L+YF D +DQWVR DFT S CIGQSS +CLELP + P
Sbjct: 178 IYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQL-PN 236
Query: 355 IRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLAG 176
R+NF YYKE EG F +ESG S+S +L+LVPIVGP GI+LPY+IL ++N LVQNGC+ G
Sbjct: 237 FRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPG 296
Query: 175 PTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSK 17
P LDA F+ VNP I YI+HALEKLY+ ECC+EP KWL EQY Y SK
Sbjct: 297 PALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASK 349
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 372 bits (955), Expect = e-100
Identities = 192/357 (53%), Positives = 243/357 (68%), Gaps = 4/357 (1%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQV GFP+ VT EAVK FLE G GTVYALK+R K KG R +AIVQFTT +
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK-KGVG-RLYAIVQFTTKEA 58
Query: 895 ADLVTSLI--NQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVL 722
AD + SL + L YG L D VP+PR M ++E I LHFGC++S EKF VL
Sbjct: 59 ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118
Query: 721 WKRVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLAT 542
W+ V VNFGFG+RK+ FLL+H G EY+LE+ Y++IW I+L CPR Q K+LLIQ+L
Sbjct: 119 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178
Query: 541 PKIYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFP 362
P+I++K S P ++FK+ +DQWVR DFT S IGQS+ +C+ELP E
Sbjct: 179 PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLEL- 237
Query: 361 PQIRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCL 182
P ++NF YYKE E F +E+G ++S SLDLVPIVGPP GI LPY+IL ++N LVQNGC+
Sbjct: 238 PDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCV 297
Query: 181 AGPTLDAAFFDSVNPQLIPSAY--IEHALEKLYHSNECCYEPVKWLNEQYTKYRQSK 17
AGP LD+ F+ V+P P + IEHAL+KLYH ECCYEP +WL +QY KY S+
Sbjct: 298 AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 354
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 366 bits (940), Expect = 9e-99
Identities = 190/355 (53%), Positives = 240/355 (67%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQV GF S V+ VK FLE G TVYALKIR K G R FAIVQFT +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A L+ L NQ L YG LK E DIVPKPRV + ++E + ++FGCQVS+EKFYVLWK
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
+NFG G+RKLEFLL++C +YKLE+ Y++IW I+LRCP +Q+ K LLIQ+ P+
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
IYEK + P L+YFKD +DQWVR DFT S CIGQSS + LELP + P
Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQL-PN 236
Query: 355 IRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLAG 176
R+NF YYKE+EG +ESG S+S +L LVPIV P I+LP++IL +VN LVQNGC+ G
Sbjct: 237 FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296
Query: 175 PTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSKHF 11
P LD F+ V+P + YI+HALEKLY+ ECCYEP +WL E+Y + +S+ +
Sbjct: 297 PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKY 351
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 366 bits (939), Expect = 1e-98
Identities = 189/355 (53%), Positives = 239/355 (67%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQV GF S V+ VK FLE G TVYALKIR K G R FAIVQFT +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A L+ L NQ L YG LK E DIVPKPRV + ++E + ++F C VS+EKFYVLWK
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
+NFG G+RKLEFLL++C +YKLE+ Y++IW I+LRCP +Q+ K LLIQ+ P+
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
IYEK + P L+YFKD +DQWVR DFT S CIGQSS +CLELP + P
Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQL-PN 236
Query: 355 IRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLAG 176
R+NF YYKE+EG +ESG S+S +L LVPIV P I+LP++IL +VN LVQNGC+ G
Sbjct: 237 FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296
Query: 175 PTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSKHF 11
P LD F+ V+P + YI+HALEKLY+ ECCYEP +WL E+Y + +S+ +
Sbjct: 297 PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKY 351
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 365 bits (938), Expect = 2e-98
Identities = 187/350 (53%), Positives = 241/350 (68%), Gaps = 1/350 (0%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
M +TIQV GFPS V+ + +K+FLE GEGT+ AL+I+ + + A VQFT+ +
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIK--QPRSGASMTHAKVQFTSFEL 58
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A+ + +L + + YG LK E DI+PKPR + S++ I LHFGCQ+S E+F VLWK
Sbjct: 59 AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
+ V FG GLRK F L+H EYKLE+SY++IW IQL+ PR Q KFLLIQ+L P+
Sbjct: 119 AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178
Query: 535 IYEKPRCSLGQTNGYPTLDY-FKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPP 359
IYEK P L Y FK+A +DQWVR IDFT S IGQS ++CLELP + P
Sbjct: 179 IYEKD---------VPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLP- 228
Query: 358 QIRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLA 179
R+NF YYKE++G F +ESG S+SH+L LVPI+GPP G LP+ IL ++NTLVQNGCL+
Sbjct: 229 NFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLS 288
Query: 178 GPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKY 29
GPTLD +FF V+P+ P ++IEHALEKLYH ECCYEPV+WL+EQY Y
Sbjct: 289 GPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTY 338
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 363 bits (932), Expect = 8e-98
Identities = 187/350 (53%), Positives = 240/350 (68%), Gaps = 1/350 (0%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQ+SGFPS V+ E+VK+FLE G GTVYA+KIRP K G R +AIVQF T +
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGG--SRSYAIVQFMTVET 58
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A+L+ L N L YG L DIVPKPR ++ SL+ + LHFGCQ+SKEKF LW+
Sbjct: 59 AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
V+FG GLR+L F LT+ VEY+L++ Y+++W I+L PR Q+ K+LLIQ+L P+
Sbjct: 119 VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
+YEK P +YFKD +DQWVRA DFT S CIG SS++ LELP + P
Sbjct: 179 VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDL-PD 237
Query: 355 IRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLAG 176
+R+NF YYKE E F +ESG SFS +LDLVPIVGPP GI LP++ + ++N L+QNGCL+G
Sbjct: 238 LRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSG 297
Query: 175 PTLDAAFFDSVNPQLIPSA-YIEHALEKLYHSNECCYEPVKWLNEQYTKY 29
PTLD F+ V+PQ I + I +ALEKL++ EC YEP WLNEQY KY
Sbjct: 298 PTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKY 347
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 355 bits (912), Expect = 2e-95
Identities = 180/360 (50%), Positives = 249/360 (69%), Gaps = 3/360 (0%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TI++ GFP+SV VK F+E GEGTV+A+K+R K + P R FAI+QFTTA+
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVP--RAFAIIQFTTANS 58
Query: 895 ADLVTSLIN---QNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYV 725
A + S N + LRYG LK E DIVP+PRV + SL+ + L FGCQ+SK +F V
Sbjct: 59 ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118
Query: 724 LWKRVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLA 545
LWK+ +VNFG G+RK+ FL +H V+YKLE+SY++IW I+L PRN++ ++LLIQ+L
Sbjct: 119 LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLG 178
Query: 544 TPKIYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEF 365
P+++E + P ++FKDA ++QW+RAIDFT IGQSS+ICLELP +
Sbjct: 179 APRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238
Query: 364 PPQIRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGC 185
P R+NF YY+E E + +++G FS + LVPIV PP G+++ YDIL +VN+LVQ+ C
Sbjct: 239 P-NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHAC 297
Query: 184 LAGPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSKHFHP 5
LAGP LD F+ V+P+ +P +IE+ALEK+Y+S E CYEP KWL +QY Y +SK+ HP
Sbjct: 298 LAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKN-HP 356
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 350 bits (897), Expect = 9e-94
Identities = 189/349 (54%), Positives = 235/349 (67%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQV G PS+V+ +K+FLE GEGT+ AL+I+ + K A VQFT+
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIK--QPKSGVSMTHAKVQFTSLRL 58
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A+L+ SL Q L YG LK E DI+PKPR + S++ I LHFG Q+S E+F VLWK
Sbjct: 59 AELIISLAKQ-LWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
+ V FGFGLRK F L+H EYKLE+S ++IW IQLR PR Q+ KFLLIQ+L P+
Sbjct: 118 AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
IYEK L YFK+ +DQWVR IDFT S IGQSS++CLELP + P
Sbjct: 178 IYEKD---------VSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP-N 227
Query: 355 IRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLAG 176
+NF YKE++ F +ESG SFS +L LVPIVGPP G LP+ IL ++NTLVQNGCL+G
Sbjct: 228 FCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSG 287
Query: 175 PTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKY 29
PTLD FF V+PQ I ++IEHALEKLY+ ECCYEPV+WL+EQY Y
Sbjct: 288 PTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY 336
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 348 bits (894), Expect = 2e-93
Identities = 184/352 (52%), Positives = 228/352 (64%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
M +T++VSGFPSS T AV+ FLE G GTV ALKIR + G R +AIVQFTT
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A+ + SL N L YG L DI+P+PR + ++E + LHFG Q SKEKF +W
Sbjct: 59 AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
VNFG G+RKL F L+H EYKL + +++IW I+L PR Q+ K+LLIQ+ P+
Sbjct: 119 GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
IYE+ S P L+YF+D ++QWVR DFT S IG SSS+CLELP + P
Sbjct: 179 IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQL-PN 237
Query: 355 IRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLAG 176
+NF YYKE+EG F +ESG +FS + DLVPIVGP G+ LPY+IL RVN LVQNGCLAG
Sbjct: 238 FNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297
Query: 175 PTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQS 20
LD F+ V+P +P IE+ALEKLYH ECCYEP KW NEQY KY S
Sbjct: 298 SMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTS 349
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 341 bits (875), Expect = 3e-91
Identities = 181/351 (51%), Positives = 231/351 (65%), Gaps = 2/351 (0%)
Frame = -1
Query: 1072 GRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADGA 893
GRT+QVSGFP EAVK+FLE G GTVY LKIR K K P R FAIVQFTT+ A
Sbjct: 75 GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSK-PNSRVFAIVQFTTSKSA 133
Query: 892 DLVTSLINQ--NLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLW 719
+++ SL Q +L +G + V NDIVP PRV+ LE I L+FG Q+S+E F +LW
Sbjct: 134 EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193
Query: 718 KRVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATP 539
V FGFGL+K+ F L H GV+YKL++ Y++IW IQLR P + ++L++Q+ P
Sbjct: 194 SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAP 253
Query: 538 KIYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPP 359
+I++KP P +Y+KD ++QWVR+IDFT S IGQSSS+CL LP P
Sbjct: 254 RIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRI-P 312
Query: 358 QIRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLA 179
IR+NF YYKE G F +++G SFSHSL LVPIV PP I+LPY IL RVN+LVQNG L
Sbjct: 313 NIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLV 372
Query: 178 GPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYR 26
GPTLD F++ +N +PS ++E +LE + CC EP KWL EQY KYR
Sbjct: 373 GPTLDTEFYNLLNG--LPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYR 421
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 341 bits (874), Expect = 4e-91
Identities = 178/353 (50%), Positives = 234/353 (66%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQ+ GFPS T E +K+FLE GEG+V+ALK+RP K G R++AI+QF +
Sbjct: 1 MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGG---RFYAIIQFQSISQ 57
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A+ + SL N L YG L A +DIVPKPR + SL + LH GCQV+K+KF VLW
Sbjct: 58 AEKIISLANARLWYGRSYLNARPA-HDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
V+FGFG+R L+F L + Y+L++SY++IW I+L R +S K+L+IQ+ P+
Sbjct: 117 TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPR 176
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
IY++ CS G NGY ++YF+D D WVR DFT CIGQSSS+CL L E P
Sbjct: 177 IYQQEVCSSGG-NGYEDMNYFRDP--DDWVRTTDFTPGSCIGQSSSLCLVLTSDGELP-D 232
Query: 355 IRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLAG 176
+NF YYK+ +G F +E+G +FS + DLVPIVG P GI+LPYDIL ++N LVQ GCL+G
Sbjct: 233 FEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSG 292
Query: 175 PTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSK 17
PTLD F+ V+P+ I IE AL+KL + E CYEP WLNE+Y KY SK
Sbjct: 293 PTLDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSK 345
>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
arietinum]
Length = 1100
Score = 333 bits (855), Expect = 7e-89
Identities = 171/357 (47%), Positives = 245/357 (68%), Gaps = 5/357 (1%)
Frame = -1
Query: 1069 RTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADGAD 890
+TI++ GFP+SV VK+F+E GEG+V A+KIR K + QR +AI+QF TA+ A
Sbjct: 5 KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKAR--VQRAYAIIQFNTANQAT 62
Query: 889 LVTSLINQN---LRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLW 719
+ SL N++ LRYG LK+ E V DIVP PR + SL+ + L+FGCQ+SKE+F +LW
Sbjct: 63 HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122
Query: 718 KRVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATP 539
++ V+ G+RK F + H ++K ++SY++IW I+ P ++ K+LLIQ++ P
Sbjct: 123 RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAP 182
Query: 538 KIYEKPRCSLGQTNGY--PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEF 365
+I+E + TN Y P +YFK++ +DQW+RA+DFT CIGQSS+ICLELP +F
Sbjct: 183 RIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDF 242
Query: 364 PPQIRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGC 185
P IR+ F +Y+E+EG + +ESG FSH+LD+VPIV PP GI +P+DIL +VN+LVQ+GC
Sbjct: 243 P-NIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGC 301
Query: 184 LAGPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSKH 14
L+G LD AF+ V+P I +IEHALEK+Y+S + CYEP +WL +QY Y S +
Sbjct: 302 LSGSELDNAFYCLVDPLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNY 358
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 333 bits (855), Expect = 7e-89
Identities = 171/357 (47%), Positives = 245/357 (68%), Gaps = 5/357 (1%)
Frame = -1
Query: 1069 RTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADGAD 890
+TI++ GFP+SV VK+F+E GEG+V A+KIR K + QR +AI+QF TA+ A
Sbjct: 5 KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKAR--VQRAYAIIQFNTANQAT 62
Query: 889 LVTSLINQN---LRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLW 719
+ SL N++ LRYG LK+ E V DIVP PR + SL+ + L+FGCQ+SKE+F +LW
Sbjct: 63 HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122
Query: 718 KRVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATP 539
++ V+ G+RK F + H ++K ++SY++IW I+ P ++ K+LLIQ++ P
Sbjct: 123 RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAP 182
Query: 538 KIYEKPRCSLGQTNGY--PTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEF 365
+I+E + TN Y P +YFK++ +DQW+RA+DFT CIGQSS+ICLELP +F
Sbjct: 183 RIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDF 242
Query: 364 PPQIRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGC 185
P IR+ F +Y+E+EG + +ESG FSH+LD+VPIV PP GI +P+DIL +VN+LVQ+GC
Sbjct: 243 P-NIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGC 301
Query: 184 LAGPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSKH 14
L+G LD AF+ V+P I +IEHALEK+Y+S + CYEP +WL +QY Y S +
Sbjct: 302 LSGSELDNAFYCLVDPLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNY 358
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 333 bits (855), Expect = 7e-89
Identities = 186/361 (51%), Positives = 238/361 (65%), Gaps = 3/361 (0%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TI +SGFPS VT +AVK FLE G GTVYA+K+RP K G R +AIVQFT+A
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGG--RLYAIVQFTSATQ 58
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A+L+ SL NQ L YG LK DIVPKPR M +LE + L FGCQVS EKF VLW+
Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
LV FG G+RK+ F L + VEY+LE+SY+ IW IQL CPR+QS K+LLIQ+ P+
Sbjct: 119 GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPR 178
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
IY+K + GQ P L++FK+A +DQWVR DFT+S IGQSSS+CL+LP + PP
Sbjct: 179 IYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP- 237
Query: 355 IRDNFPYYKEDEGPF-FMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLA 179
+ NF YY+E E F ++ +FS DL PIV + LPY IL ++N LVQ GC+
Sbjct: 238 FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIP 296
Query: 178 GPTLDAAFFDSVNPQLIPS--AYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSKHFHP 5
P LDA+F+ V ++I + ++EHALEKL+H EC Y+P +L EQY KY + HP
Sbjct: 297 WPLLDASFYRLVE-RIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSR----HP 351
Query: 4 P 2
P
Sbjct: 352 P 352
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 328 bits (842), Expect = 2e-87
Identities = 181/357 (50%), Positives = 221/357 (61%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MGRTIQV GFP V E VK+FLE GEGTV AL+++ KV +R +A VQFT
Sbjct: 1 MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVG---RRAYARVQFTNIRC 57
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A+ + L L YG LK +E+ DIV PR +E + L+FGCQ+S KF VLWK
Sbjct: 58 AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
V FG G++K+ F L H VEYK+++SY++IW I L QS K L+IQ+ P+
Sbjct: 118 GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPR 177
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
IY+K S+ YF +DQWVR DFT S IGQSSS+CL+LP P
Sbjct: 178 IYKKLSGSV--------YSYFMVTQDDQWVRTTDFTQSL-IGQSSSLCLQLPYGMRLP-N 227
Query: 355 IRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNGCLAG 176
RDNF YYKE E PF +E+G FSH+ DLVPIV PP I+LPY +L +V +LVQ GCL G
Sbjct: 228 FRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPG 287
Query: 175 PTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSKHFHP 5
P LD +FFD VNP YIEHALEKLY+ ECCY P WL EQY +YR SK HP
Sbjct: 288 PKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKE-HP 343
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 328 bits (842), Expect = 2e-87
Identities = 170/355 (47%), Positives = 228/355 (64%), Gaps = 2/355 (0%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQV GFP V + VK FLE G GTVYA+K+R K GP R FAIVQFT+
Sbjct: 1 MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGGP--RVFAIVQFTSERH 58
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
A L+ ++ + L YG LK +E DIVPKPR S+ S+ + ++FGCQVS +K LW
Sbjct: 59 ARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWS 118
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
V+FG G+RKL F ++ +Y+LE+SY++IW I L P+ S KFL+IQV+ PK
Sbjct: 119 AHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPK 178
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
I+EK + G +D++ D ++QW+R DFT+S CIGQS++ CLELP P
Sbjct: 179 IFEKEDQPVNFLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHV-PD 235
Query: 355 IRDNFPYYKEDE-GPFFMESGGSFSHSLD-LVPIVGPPPGIELPYDILCRVNTLVQNGCL 182
R+NF Y E F ++SG S+S + + LVP+V PPPG +LP++IL +VNTLVQN CL
Sbjct: 236 FRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACL 295
Query: 181 AGPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKYRQSK 17
GP LD F+ +NP+ A I+H+LEKL+H ECCYEP +WL E+Y K SK
Sbjct: 296 PGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSK 350
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 323 bits (827), Expect = 1e-85
Identities = 165/351 (47%), Positives = 225/351 (64%), Gaps = 2/351 (0%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQV GFP+ V+ E VK+FLE G GTVYA+K+R K GP R +AIVQFT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGP--RVYAIVQFTSERH 58
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
L+ + + L YG LK +E DIVPKPR S+ ++ + + FGCQVS +KF LW
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
V+FG G+RKL F + +Y+LE+SY++IW I L P+ +S KFL+IQV+ PK
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
I+EK + G +D++ D ++QW+R DFT+S CIGQS++ CLELP P
Sbjct: 179 IFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV-PD 235
Query: 355 IRDNFPYYKEDE-GPFFMESGGSFSHSLD-LVPIVGPPPGIELPYDILCRVNTLVQNGCL 182
R+NF Y E F +ESG S+S + + LVP+V PPPG LP++IL ++NTLVQN CL
Sbjct: 236 FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 295
Query: 181 AGPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKY 29
+GP LD F+ +N + A I+H LEKL+H ECCYEP WL ++Y K+
Sbjct: 296 SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKW 346
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 323 bits (827), Expect = 1e-85
Identities = 165/351 (47%), Positives = 225/351 (64%), Gaps = 2/351 (0%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQV GFP+ V+ E VK+FLE G GTVYA+K+R K GP R +AIVQFT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGP--RVYAIVQFTSERH 58
Query: 895 ADLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLWK 716
L+ + + L YG LK +E DIVPKPR S+ ++ + + FGCQVS +KF LW
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118
Query: 715 RVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATPK 536
V+FG G+RKL F + +Y+LE+SY++IW I L P+ +S KFL+IQV+ PK
Sbjct: 119 AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178
Query: 535 IYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPPQ 356
I+EK + G +D++ D ++QW+R DFT+S CIGQS++ CLELP P
Sbjct: 179 IFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV-PD 235
Query: 355 IRDNFPYYKEDE-GPFFMESGGSFSHSLD-LVPIVGPPPGIELPYDILCRVNTLVQNGCL 182
R+NF Y E F +ESG S+S + + LVP+V PPPG LP++IL ++NTLVQN CL
Sbjct: 236 FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 295
Query: 181 AGPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKY 29
+GP LD F+ +N + A I+H LEKL+H ECCYEP WL ++Y K+
Sbjct: 296 SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKW 346
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 321 bits (823), Expect = 3e-85
Identities = 166/349 (47%), Positives = 224/349 (64%), Gaps = 3/349 (0%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
MG+TIQV GFP+ V+ E VK+FLE G GTVYA+K+R K GP R FAIVQFT
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGP--RVFAIVQFTNERY 58
Query: 895 A-DLVTSLINQNLRYGIYQLKVWEAVNDIVPKPRVSMLSLEVIALHFGCQVSKEKFYVLW 719
A ++T + L YG L +E DIVPKPR S+ ++ + ++FGCQVS +KF LW
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118
Query: 718 KRVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVLATP 539
V+FG G+RKL F + +Y+LE+SY++IW I L P+ +S KFL+IQV+ P
Sbjct: 119 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178
Query: 538 KIYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCEFPP 359
KI+EK + G +D++ D ++QW+R DFT+S CIGQS++ CLELP P
Sbjct: 179 KIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV-P 235
Query: 358 QIRDNFPYYKEDE-GPFFMESGGSFSHSLD-LVPIVGPPPGIELPYDILCRVNTLVQNGC 185
R+NF Y E PF +ESG S+S + + LVP+V PPPG +LP++IL ++NTLVQN C
Sbjct: 236 DFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNAC 295
Query: 184 LAGPTLDAAFFDSVNPQLIPSAYIEHALEKLYHSNECCYEPVKWLNEQY 38
L GP LD + +NP+ A I+H LEKL+H E CYEP +WL +QY
Sbjct: 296 LPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQY 344
>ref|XP_002315849.2| hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
gi|550329580|gb|EEF02020.2| hypothetical protein
POPTR_0010s11560g [Populus trichocarpa]
Length = 1119
Score = 321 bits (822), Expect = 5e-85
Identities = 175/355 (49%), Positives = 228/355 (64%), Gaps = 6/355 (1%)
Frame = -1
Query: 1075 MGRTIQVSGFPSSVTFEAVKQFLEVCAGEGTVYALKIRPCKVKGPEQRYFAIVQFTTADG 896
M +TI + GFP+ + +K+FLE +GEGTV A+ + K G R AIV+FTT++
Sbjct: 1 MAKTISLYGFPTVDPPDDIKEFLEEYSGEGTVVAVHVAQPKSAG--SRTNAIVEFTTSEA 58
Query: 895 ADLVT--SLINQNLRYGIYQLKVWEAVNDIVPKPRV--SMLSLEVIALHFGCQVSKEKFY 728
A + SL ++ L YG LK + D VP + + S++ I LHFGCQVSKEKF
Sbjct: 59 AQNIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSMDNITLHFGCQVSKEKFS 118
Query: 727 VLWKRVGALVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWAIQLRCPRNQSKKFLLIQVL 548
VLW + V FG LRK F LTH YKLE+SY++I+ I+L PR ++KK+LL+Q+L
Sbjct: 119 VLWTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGKTKKYLLVQML 178
Query: 547 ATPKIYEKPRCSLGQTNGYPTLDYFKDAVNDQWVRAIDFTTSYCIGQSSSICLELPQTCE 368
PKI++K TN L FK+A +DQWVR +DF+ SYCIGQSS++CLELP +
Sbjct: 179 GGPKIFKK------DTN---KLSNFKEATDDQWVRDVDFSPSYCIGQSSALCLELPPNSQ 229
Query: 367 FPPQIRDNFPYYKEDEGPFFMESGGSFSHSLDLVPIVGPPPGIELPYDILCRVNTLVQNG 188
P ++NF YKEDEG F +E G +F DLVPI+ G ELPYDI+ +VN+LVQ+G
Sbjct: 230 L-PNFQENFVCYKEDEGHFILEKGSTFCCKSDLVPILSAAQGSELPYDIVFKVNSLVQHG 288
Query: 187 CLAGPTLDAAFFDSVNPQ--LIPSAYIEHALEKLYHSNECCYEPVKWLNEQYTKY 29
CL GP LDA FF +NP I AYI+HALEKL H ECCY+P +WL EQY KY
Sbjct: 289 CLPGPALDARFFRLINPSKIRIAHAYIQHALEKLSHLKECCYDPARWLREQYQKY 343