BLASTX nr result
ID: Cocculus23_contig00019218
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00019218
(1510 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 422 e-115
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 414 e-113
ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, par... 397 e-108
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 392 e-106
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 389 e-105
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 386 e-104
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 385 e-104
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 377 e-102
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 374 e-101
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 369 2e-99
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 365 2e-98
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 358 5e-96
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 357 6e-96
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 357 1e-95
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 353 1e-94
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 352 3e-94
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 349 2e-93
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 345 4e-92
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 338 4e-90
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 333 1e-88
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 422 bits (1086), Expect = e-115
Identities = 235/468 (50%), Positives = 305/468 (65%), Gaps = 8/468 (1%)
Frame = -1
Query: 1381 EVILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLLRQQGGFSDHKSAMDTA 1202
EV LP+SVE+ L+R+C P P + R+ LA LGEE L+LLR+ H + +
Sbjct: 2 EVSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRK----ISHLKIRNLS 57
Query: 1201 SESRRASVGLQGSRSLGGARGDKAKLPFSSVLDELMEPTES--MPSNAVLVALGKLEFRK 1028
A + ++ G + P + P ++ S+ LVALG+LEFRK
Sbjct: 58 -----ALINYMVGKAAQGDAASHSPTPKHLISSPSSTPKKARRQASSPQLVALGELEFRK 112
Query: 1027 AFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILGRDCIDDKDRLQYQDWDSG 848
AF++LSY G +D+++ I ++ +LPM FE+E+W LGR I ++DR + DWDS
Sbjct: 113 AFLILSYIGDKRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSD 172
Query: 847 RTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQANGKL------SI 686
+T+IY CH + +G+ FKGP L K +THLQRVLGDEN+L V+FA++ + S
Sbjct: 173 KTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSN 232
Query: 685 VGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFIDRKSPYI 506
++KIAREGI VGLR+YRFFV+KDGGKEE+KKNPT SSVK YFV MES+A
Sbjct: 233 ASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPT-SSVKCYFVFMESSA--------- 282
Query: 505 FSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIERIQDIYCKDKK 326
S KT+HEARC FMH H V S AKYMAR SLILSKT+KLDVDL +V+I+RI D +D+
Sbjct: 283 LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDED 342
Query: 325 GDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLEEDDKGGILTESMSNT 146
G ++Y+E+ KPLI TDGTGFIS+DLAL+CP N+ + Y M+N
Sbjct: 343 GHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKY------------------MNNG 384
Query: 145 HEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVESDPKL 2
+ PLLIQCRLFNNGCAVKGT L+N+KLPP TIQIRPSMIKVE+DPKL
Sbjct: 385 NSDPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKL 432
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 414 bits (1065), Expect = e-113
Identities = 235/476 (49%), Positives = 307/476 (64%), Gaps = 16/476 (3%)
Frame = -1
Query: 1381 EVILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLLRQQGGFSDHKSAMDTA 1202
EV LP+SVE+ L+R+C P P + R+ LA LGEE L+LLR+ H + +
Sbjct: 2 EVSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRK----ISHLKIRNLS 57
Query: 1201 SESRRASVGLQGSRSLGGARGDKAKLPFSSVLDELMEPTES--MPSNAVLVALGKLEFRK 1028
A + ++ G + P + P ++ S+ LVALG+LEFRK
Sbjct: 58 -----ALINYMVGKAAQGDAASHSPTPKHLISSPSSTPKKARRQASSPQLVALGELEFRK 112
Query: 1027 AFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILGRDCIDDKDRLQYQDWDSG 848
AF++LSY G+ +D+++ I ++ +LPM FE+E+W LGR I ++DR + DWDS
Sbjct: 113 AFLILSYIGELRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSD 172
Query: 847 RTYIYCCHAASNGTCIFK--------GPTLQKQKTHLQRVLGDENVLDVRFADEQANGKL 692
+T+IY CH + +G+ FK GP L K +THLQRVLGDEN+L V+FA++ +
Sbjct: 173 KTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSS 232
Query: 691 ------SIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAF 530
S ++KIAREGI VGLR+YRFFV+KDGGKEE+KKNPTSS VK YFV MES+A
Sbjct: 233 LNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYFVFMESSAL 291
Query: 529 IDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIERIQ 350
S KT+HEARC FMH H V S AKYMAR SLILSKT+KLDVDL +V+I+RI
Sbjct: 292 ---------SGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRID 342
Query: 349 DIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLEEDDKGGI 170
D +D+ G ++Y+E+ KPLI TDGTGFIS+DLAL+CP N+ + Y+ +G + D
Sbjct: 343 DEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDVCDS--- 399
Query: 169 LTESMSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVESDPKL 2
PLLIQCRLFNNGCAVKGT L+N+KLPP TIQIRPSMIKVE+DPKL
Sbjct: 400 ---------RYPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKL 446
>ref|XP_007152979.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris]
gi|561026288|gb|ESW24973.1| hypothetical protein
PHAVU_004G1764001g, partial [Phaseolus vulgaris]
Length = 689
Score = 397 bits (1019), Expect = e-108
Identities = 225/481 (46%), Positives = 306/481 (63%), Gaps = 16/481 (3%)
Frame = -1
Query: 1396 NRSSAEVILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLLRQQGGFSDHKS 1217
+ S+ V+LP +VE + +C + P R+ LA +GE++ALQ+LR
Sbjct: 6 HHSNNHVLLPTAVEALINTICHDQNQLPPDFIIRQGLAAVGEQQALQILRTIA------E 59
Query: 1216 AMDTASESRRASVGLQGSRSLGGARGDKAKLPFSSVLDELMEPTESMPSNAVLVALGKLE 1037
S S + L+ R++ + + P + + PT +++ L ALG++E
Sbjct: 60 RPIRISLSAFIAYMLKNHRTVTSSTPSTSSTPSTPLTPS---PTRPGQTSSALHALGEME 116
Query: 1036 FRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILGRDCI-DDKDRLQYQD 860
FRKAF+ LSY G+ ++++V + + I+ + DLPM TFE +W G+D I DR Y D
Sbjct: 117 FRKAFLCLSYIGRESLENVASADCIRSLKDLPMATFEKTIWEAFGKDHIYSQSDRQVYVD 176
Query: 859 WDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQANGKLSIVG 680
WDSGRT++Y C+ +S+G+ FKGP LQ +THLQR LGD+NVL V+FA+ +
Sbjct: 177 WDSGRTHVYQCYVSSDGSLRFKGPILQSTQTHLQRSLGDDNVLLVKFAENGIANNIRTSA 236
Query: 679 ------FHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFIDRK 518
+ K +EGI VGLR YRFFV+KDGGKEE+KK+PTSSSVK YFVRM+S ID
Sbjct: 237 EEAYRLYGKFGKEGINVGLRLYRFFVFKDGGKEEKKKDPTSSSVKCYFVRMQSCWSIDGS 296
Query: 517 SPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIERIQDIYC 338
+ YI SNKT+ EAR FMH H + S KYMAR SLILSKT KL++DL +V+++ IQD+YC
Sbjct: 297 ANYILSNKTVSEARGLFMHAHLLPSLDKYMARFSLILSKTFKLNIDLATVNVQTIQDVYC 356
Query: 337 KDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYL-------LHGVLEEDD- 182
+D+ G+I+Y + EKP I TDGTGFIS DLAL CP ++ K N L ++ +LE +D
Sbjct: 357 QDENGNIIY-DNEKPRILTDGTGFISGDLALLCPNSVCKGNNLENNYIQEINNLLELEDM 415
Query: 181 -KGGILTESMSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVESDPK 5
K TE TH+ PLLIQCRLF+ G A+KGT L+NKKLPP TI +RPSMIKVE+D
Sbjct: 416 CKEMGETELKLTTHQPPLLIQCRLFHMGSAIKGTLLVNKKLPPRTIHVRPSMIKVETDLS 475
Query: 4 L 2
L
Sbjct: 476 L 476
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 392 bits (1006), Expect = e-106
Identities = 234/505 (46%), Positives = 313/505 (61%), Gaps = 46/505 (9%)
Frame = -1
Query: 1378 VILPYSVEETLRRV-CELYSLPLPSSKQRKELAELGEERALQLLRQ------QGGFSDHK 1220
V LP SVE+ + ++ E LP P R+ LA LGE+ AL +LR + FS +
Sbjct: 13 VSLPLSVEQLISKIYTEQNKLP-PDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYI 71
Query: 1219 SAM-----------------DTASESRRASVGLQGSRSLGGARGDKAKLPFSSVLDE--- 1100
+ + ++ + R+ V + R L +G + S V D+
Sbjct: 72 NYLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQGTDYVVKQSPVADQQPR 131
Query: 1099 ---LMEPTESMPSNAVL---VALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPM 938
+ + +M A + VALG+LEFRKAF++LSY G+N++++V+ + I+ M DL M
Sbjct: 132 GSPMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQM 191
Query: 937 VTFESELWRILGRDCIDDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQ 758
FESE+W LGR I +DR WDSG+T++Y CH ++ G C FKGP L + +THLQ
Sbjct: 192 ARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQ 251
Query: 757 RVLGDENVLDVRFADEQA------NGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEE 596
R LGD+N+L V+F +E N S +++IAREGI VGLR Y FFV+KDGGKEE
Sbjct: 252 RELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEE 311
Query: 595 RKKNPTSSSVKSYFVRMESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLS 416
+KK+P++S VK YFVRMES+AFID YI S KT+HEAR FMHV TV S A YM+RLS
Sbjct: 312 KKKDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLS 371
Query: 415 LILSKTIKLDVDLGSVHIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCP 236
LILSKT+KL+VD ++IERI+D C+DK G+++Y + E LIHTDGTGFIS+DLALKCP
Sbjct: 372 LILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGE-ALIHTDGTGFISEDLALKCP 430
Query: 235 KNIYKRNYLLHGVLEED-DKGGI------LTESMSNTHEAPLLIQCRLFNNGCAVKGTFL 77
+YK E D+ + + + S+ E PLL+Q RLF NG AVKGT L
Sbjct: 431 TYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLL 490
Query: 76 INKKLPPCTIQIRPSMIKVESDPKL 2
+NKKLPP TIQIRPSMIKV++D L
Sbjct: 491 LNKKLPPQTIQIRPSMIKVKADRDL 515
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 389 bits (1000), Expect = e-105
Identities = 232/503 (46%), Positives = 307/503 (61%), Gaps = 44/503 (8%)
Frame = -1
Query: 1378 VILPYSVEETLRRV-CELYSLPLPSSKQRKELAELGEERALQLLRQ------QGGFSDHK 1220
V LP SVE+ + ++ E LP P R+ LA LGE+ AL +LR + FS +
Sbjct: 13 VSLPLSVEQLISKIYTEQNKLP-PDDGARRSLASLGEDAALDVLRTIASDKIKYSFSGYI 71
Query: 1219 SAM-----------------DTASESRRASVGLQGSRSLGGARGDKAKL-------PFSS 1112
+ + ++ + R+ V + R L + K P S
Sbjct: 72 NYLVKKRNNNGSPLKRVCFSPSSPQQNRSPVTVTTVRLLNLPQDYVVKQSPVADQQPRGS 131
Query: 1111 VLDELMEPTESMPSNAVLVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVT 932
+ + S VALG+LEFRKAF++LSY G+N++++V+ + I+ M DL M
Sbjct: 132 PMSSISHAMRHRASIPQYVALGELEFRKAFLILSYIGENSLEEVITADEIRGMRDLQMAR 191
Query: 931 FESELWRILGRDCIDDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRV 752
FESE+W LGR I +DR WDSG+T++Y CH ++ G C FKGP L + +THLQR
Sbjct: 192 FESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTRTHLQRE 251
Query: 751 LGDENVLDVRFADEQA------NGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERK 590
LGD+N+L V+F +E N S +++IAREGI VGLR Y FFV+KDGGKEE+K
Sbjct: 252 LGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKK 311
Query: 589 KNPTSSSVKSYFVRMESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLI 410
K+P++S VK YFVRMES+AFID YI S KT+HEAR FMHV TV S A YM+RLSLI
Sbjct: 312 KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFMHVRTVSSVANYMSRLSLI 371
Query: 409 LSKTIKLDVDLGSVHIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKN 230
LSKT+KL+VD ++IERI+D C+DK G+++Y + E LIHTDGTGFIS+DLALKCP
Sbjct: 372 LSKTMKLEVDFSRINIERIEDEPCRDKDGNVVYKDGE-ALIHTDGTGFISEDLALKCPTY 430
Query: 229 IYKRNYLLHGVLEED-DKGGI------LTESMSNTHEAPLLIQCRLFNNGCAVKGTFLIN 71
+YK E D+ + + + S+ E PLL+Q RLF NG AVKGT L+N
Sbjct: 431 VYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYNGTAVKGTLLLN 490
Query: 70 KKLPPCTIQIRPSMIKVESDPKL 2
KKLPP TIQIRPSMIKV++D L
Sbjct: 491 KKLPPQTIQIRPSMIKVKADRDL 513
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 386 bits (991), Expect = e-104
Identities = 223/482 (46%), Positives = 301/482 (62%), Gaps = 22/482 (4%)
Frame = -1
Query: 1381 EVILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLLRQQGGFSDHKSAMDTA 1202
EV LP SV E L R+C S P P ++ R++LA GE+ AL++LR +D K+ + +
Sbjct: 15 EVPLPRSVLELLERICAERSQPPPDAELRRKLASAGEDEALRVLRT---IADCKTKIKSL 71
Query: 1201 SESRRASVGLQGSRSLGGARGDKAKLPFSSVLDELMEPTESM--------PSNAVLVALG 1046
+ Q P S + E P+ S + A + ALG
Sbjct: 72 HGFVTYLLRQQPPPP-------SLSSPSRSPVPENSRPSSSPGTFANSQGANGAQMEALG 124
Query: 1045 KLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILGRDCIDDKDRLQY 866
+LEFRK F++L+Y G+N ++ V I+ + +L MV FE ++W+ G +D +DR Y
Sbjct: 125 ELEFRKQFLILNYIGRNELQSVTTAEEIRSLKNLSMVQFEKQVWQRFGEKYVDQEDRRIY 184
Query: 865 QDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQANGKLSI 686
DWDSG+T+IY CH + G+ FKGP L+K K HLQ+VLGD+NVL V+FA+E+A + SI
Sbjct: 185 HDWDSGKTHIYRCHVSPEGSFRFKGPYLEKPKKHLQKVLGDDNVLMVKFAEEEAE-RFSI 243
Query: 685 -------VGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFI 527
G+ KI REGI VGLRRY FFV+KDGGKEE+KK+PTSS VK +F+R+ S+A I
Sbjct: 244 GSRDHYYAGYSKICREGILVGLRRYCFFVFKDGGKEEKKKDPTSSPVKCFFIRIHSDACI 303
Query: 526 DRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIERIQD 347
D+ YI S +TI EAR FMH HTV S + YM R SLILS T+ L +DL SV+I+ I+D
Sbjct: 304 DQNVSYILSGRTISEARKLFMHAHTVSSVSNYMIRFSLILSNTLSLKIDLSSVNIDIIED 363
Query: 346 IYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLE--EDDKGG 173
YC+D+ G+ +Y + KPLI+TDGTGFIS+DLAL CPKN+ K + +E + G
Sbjct: 364 EYCQDESGNPIY-RDGKPLIYTDGTGFISEDLALLCPKNLEKWKRINDNNIEIMHNQDGH 422
Query: 172 I-----LTESMSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVESDP 8
+ + + T E P+LIQ R+FN G AVKGTFL+NKKL P TI+IR SM+KVE D
Sbjct: 423 VENVAEMGHHGTETLEPPMLIQFRMFNKGRAVKGTFLVNKKLEPKTIKIRHSMVKVEPDR 482
Query: 7 KL 2
KL
Sbjct: 483 KL 484
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 385 bits (988), Expect = e-104
Identities = 220/503 (43%), Positives = 314/503 (62%), Gaps = 36/503 (7%)
Frame = -1
Query: 1402 MANRSSAEVILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLL--------- 1250
MA++S V LP SVE + ++ E S P S R+ LAELGE++ALQ+L
Sbjct: 1 MADQS---VNLPSSVENLINQIREQQSQPPLDSSIRRNLAELGEQKALQILYYISTQPIK 57
Query: 1249 RQQGGFS-----DHKSAMDTASESRRASVGLQGSRSLGGARGDKAKLPFSSVLDELMEPT 1085
R F+ H+S + S S S+S + + S L +
Sbjct: 58 RSLNAFTVYMINQHRSPPSPSRPSSSQSQSQSQSQSRPYSLQSQLLSHLQSRPSPLPLRS 117
Query: 1084 ESMPSNA--------VLVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTF 929
+S+PS++ VL ALG+LEFRK+F+++SY G+ NI++V+ ++ + +L M F
Sbjct: 118 QSLPSSSTAPPPHSDVLTALGELEFRKSFLLMSYAGRENIENVVTAEYVRSLKELTMKNF 177
Query: 928 ESELWRILGRDCID-DKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRV 752
E E+W +G+ I+ DRL Y DWDSGRT+IY C + NG+ FKGP LQ +THLQ+
Sbjct: 178 EKEIWETVGQKYIERPTDRLVYLDWDSGRTHIYQCFVSPNGSLRFKGPILQHTRTHLQKS 237
Query: 751 LGDENVLDVRFADEQ------ANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERK 590
LGD+NVL V+FA++Q + + + + K +EG+ VGLR YRFFV+K GGKEE+K
Sbjct: 238 LGDDNVLLVKFAEDQYARKSETSAQKAAKHYEKFGKEGLRVGLRLYRFFVFKVGGKEEKK 297
Query: 589 KNPTSSSVKSYFVRMESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLI 410
K+PT+SSVK YFVR ES+ D + YI SN+T+ E+R FMH H + + KYMAR SLI
Sbjct: 298 KDPTTSSVKCYFVRTESSCSTDERESYILSNRTMFESRSLFMHAHMLPNIDKYMARFSLI 357
Query: 409 LSKTIKLDVDLGSVHIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKN 230
LSKT KL+VD +V ++ I D+ C+D+ G+ +Y+ E++ ++ TDGTGFIS+DLA+ CP N
Sbjct: 358 LSKTYKLNVDWTTVSVKTIPDVCCQDEHGNTVYHNEKRCIL-TDGTGFISEDLAVLCPNN 416
Query: 229 IYKRNYLLHGVLEE-------DDKGGILTESMSNTHEAPLLIQCRLFNNGCAVKGTFLIN 71
+ K + L + ++E +D + E+ + H+ PLLIQCRLF+ GCA+KGT L+N
Sbjct: 417 VLKGSNLKNTHIKEISNLVKLEDMSKAMGEAALSKHQPPLLIQCRLFHMGCAMKGTLLVN 476
Query: 70 KKLPPCTIQIRPSMIKVESDPKL 2
KKL P TIQ+RPSMIKV +DP L
Sbjct: 477 KKLSPSTIQVRPSMIKVMTDPSL 499
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 377 bits (968), Expect = e-102
Identities = 212/484 (43%), Positives = 297/484 (61%), Gaps = 25/484 (5%)
Frame = -1
Query: 1378 VILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLLRQQG---------GFSD 1226
+ILP SVE + +C + P R L GEE++L++L + GF +
Sbjct: 11 LILPPSVEALIESICRDQNRPPLDYSTRHRLKLQGEEQSLRILNKIAATRIRLSFAGFVN 70
Query: 1225 HKSAMDTASESRRASVGLQGSRSLGGARGDKAKLPFSSVLDELMEPTESMPSNAVLVALG 1046
H +D + + + + P + P PS+ +L ALG
Sbjct: 71 HM--LDDINHQNNNNNNNNNNNNNNNNNSHSQPEPSTRQQTSPTRPPRPTPSS-LLHALG 127
Query: 1045 KLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILGRDCI-DDKDRLQ 869
+LEFRKAF++LSY G+ ++++ + I+ + DLPM FE +W G CI D DR
Sbjct: 128 ELEFRKAFLILSYIGRESLENCITDAKIRSLKDLPMAKFEKTIWEDFGEKCIYDQSDRQL 187
Query: 868 YQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADE------Q 707
++DW+SGRT++Y C +G FKGP LQ +THLQ+ LGD+NVL V+FA++ +
Sbjct: 188 HRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGSGKNFR 247
Query: 706 ANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFI 527
+ + + + K +EGI VGLR YRFFV+KDGG EE++K+PTSS+VK YFVRM+S
Sbjct: 248 THAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQSGCSA 307
Query: 526 DRKSPYIFSNKTIHEARCTFMHVH-TVGSFAKYMARLSLILSKTIKLDVDLGSVHIERIQ 350
D + YI SNKT+ EAR FMH H + + KYMAR SLILSKT+KL++DL +V +++I
Sbjct: 308 DEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTTVSVQKIP 367
Query: 349 DIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYL-------LHGVLE 191
D YCKD G+I+ + EKP I TDGTGFIS+DLAL CP N+YK + L ++ ++E
Sbjct: 368 DEYCKDANGNIMV-DNEKPRILTDGTGFISRDLALLCPNNVYKGSNLENNCIQEINNLVE 426
Query: 190 EDDKGGILTES-MSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVES 14
+D + E+ +THE PLLIQCRLF+ G A+KGT L+N+KLPP TIQ+RPSMIKVE
Sbjct: 427 LEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEK 486
Query: 13 DPKL 2
DP +
Sbjct: 487 DPSV 490
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 374 bits (961), Expect = e-101
Identities = 209/400 (52%), Positives = 271/400 (67%), Gaps = 12/400 (3%)
Frame = -1
Query: 1165 SRSLGGARGD-KAKLPFSSVLDELMEPTESMPSNAVLVALGKLEFRKAFMVLSYCGKNNI 989
S+S GA+ KL SS +D + ++ LVALG+LEFRKAF++LSY G N+
Sbjct: 3 SQSDSGAQSPISLKLEGSSTMDSQRQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNL 62
Query: 988 KDVMNVNTIQRMSDLPMVTFESELWRILG--RDCIDDKDRLQYQDWDSGRTYIYCCHAAS 815
++V++V+ I+ DLPM TFES++W G RD I ++DR++Y DWDSG+T+IY CH
Sbjct: 63 EEVVSVDQIRGYKDLPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDP 122
Query: 814 NGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFA---DEQANGKLSIVGF----HKIAREG 656
+G+ FKGP L K + LQR LGD+N+L V+F D++ +G S+ + +K+ EG
Sbjct: 123 DGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEG 182
Query: 655 ICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFIDRKSPYIFSNKTIHEAR 476
I VGLR YRFFV+KDGGKEE+KK+PT+S VK +FVRMES A ID + I S KTI +AR
Sbjct: 183 IHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVRMESVASIDNQDN-ILSGKTIRQAR 241
Query: 475 CTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIERIQDIYCKDKKGDILYNEEEK 296
FMHV + S + YMAR SLILSKT+ L+VDL V I+ I D C+DK G+++Y + K
Sbjct: 242 SVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGK 301
Query: 295 PLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLEEDDKGGILTESMSNTH--EAPLLIQ 122
PLIHTDGTGFIS DLALKCPKN +K L +E + + E + PLLIQ
Sbjct: 302 PLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQYPECRNGDPPLLIQ 361
Query: 121 CRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVESDPKL 2
RLFNNG AVKGTFL+NKKL T+ IRPSMIKVE+DPKL
Sbjct: 362 FRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKL 401
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 369 bits (947), Expect = 2e-99
Identities = 200/364 (54%), Positives = 256/364 (70%), Gaps = 11/364 (3%)
Frame = -1
Query: 1060 LVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILG--RDCID 887
LVALG+LEFRKAF++LSY G N+++V++V+ I+ DLPM TFES++W G RD I
Sbjct: 17 LVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDLPMRTFESKIWEAFGCRRDYIK 76
Query: 886 DKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFA--- 716
++DR++Y DWDSG+T+IY CH +G+ FKGP L K + LQR LGD+N+L V+F
Sbjct: 77 EEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRTLGDDNILMVKFGEVK 136
Query: 715 DEQANGKLSIVGF----HKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVR 548
D++ +G S+ + +K+ EGI VGLR YRFFV+KDGGKEE+KK+PT+S VK +FVR
Sbjct: 137 DDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVR 196
Query: 547 MESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSV 368
MES A ID + I S KTI +AR FMHV + S + YMAR SLILSKT+ L+VDL V
Sbjct: 197 MESVASIDNQDN-ILSGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCV 255
Query: 367 HIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLEE 188
I+ I D C+DK G+++Y + KPLIHTDGTGFIS DLALKCPKN +K L +E
Sbjct: 256 DIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCPKNQFKGTCLRASNIER 315
Query: 187 DDKGGILTESMSNTH--EAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVES 14
+ + E + PLLIQ RLFNNG AVKGTFL+NKKL T+ IRPSMIKVE+
Sbjct: 316 LNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVET 375
Query: 13 DPKL 2
DPKL
Sbjct: 376 DPKL 379
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 365 bits (938), Expect = 2e-98
Identities = 216/474 (45%), Positives = 290/474 (61%), Gaps = 18/474 (3%)
Frame = -1
Query: 1378 VILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLLRQQGGFSDHKSAMDTAS 1199
V+LP++VE L ++C S+ S + R+ LA +GE A+ LL + + D ++
Sbjct: 22 VLLPHAVEAKLGQICRYQSVQPASMRAREMLASIGESSAMNLLN----WISTQKIRDFSA 77
Query: 1198 ESRRASVGLQGSRSLGGARGDKAK----LPFSSVLDELMEPTESMPSNAVLVALGKLEFR 1031
+ + + D + L SS++++ T ALG+LEFR
Sbjct: 78 FIIYMVKNMNRPPDVLSSTDDVCECAPNLEPSSLMNDFRCNTYGSNEFQFRKALGELEFR 137
Query: 1030 KAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILGRDCIDDKDRLQYQDWDS 851
KAF++L+Y GK I DV+++ I+ DL M FE E+WR +G DR DWDS
Sbjct: 138 KAFLILNYIGKQRIDDVLSIEKIRTWKDLSMQCFEYEVWRTVGERYASQTDRRNL-DWDS 196
Query: 850 GRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQAN---GKLSIVG 680
G+ Y CH G FKGP L+ +THL+RVLGD+ VL V+FA+E + G+ ++
Sbjct: 197 GKAENYQCHVDPVGNFSFKGPFLESTQTHLRRVLGDDKVLTVKFAEEMVDERRGEFNLSR 256
Query: 679 ----FHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMESNAFIDRKSP 512
F +IA++GI VGLRRY FFV+KDGGKEE++KN ++ VK YFV M+S+A D +P
Sbjct: 257 SKNIFRRIAKDGILVGLRRYHFFVFKDGGKEEKRKNANTTGVKCYFVCMKSDAESDMHTP 316
Query: 511 YIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIERIQDIYCKD 332
YI SNKTI EAR FM VHTV + AKYMAR SLILSKTIKL+VDLGSV+IERI D C D
Sbjct: 317 YILSNKTIQEARSMFMDVHTVPNLAKYMARFSLILSKTIKLEVDLGSVNIERINDKPCLD 376
Query: 331 KKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLE------EDDKGGI 170
+I+Y++ + LIHTDGTGFIS+DL K KNI+K YL +E E + +
Sbjct: 377 NHNEIVYDQNGQCLIHTDGTGFISEDLMSKFSKNIFKERYLKQKKVETCLNGMELNAKSV 436
Query: 169 LTESMSN-THEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVESD 11
L E + + + LLIQ RLF +GCAVKGT L+NK LPP TIQ+RPSM+KVE D
Sbjct: 437 LDEEIKYVSGDLHLLIQFRLFYDGCAVKGTVLVNKLLPPNTIQVRPSMVKVERD 490
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 358 bits (918), Expect = 5e-96
Identities = 232/550 (42%), Positives = 299/550 (54%), Gaps = 66/550 (12%)
Frame = -1
Query: 1453 REINSHCSPNS*SIKSTMANRSSAEVILPYSVEETLRRVCELYSLPLPSSKQRKELAELG 1274
R N HCS ++ ++ EV LP SVE+ L +C+L+ PLP ++ + LA +G
Sbjct: 38 RRRNLHCSASAFAMADHFL-----EVSLPPSVEQFLLHICKLHDQPLPDTEVLRALASVG 92
Query: 1273 EERALQLL--------RQQGGF--------------------SDHKSAMDTASESR---- 1190
E AL L R GF S H+S + S+
Sbjct: 93 EVAALDALHKISCSTVRNLSGFILHLVRKDSCASPQNKMVRVSPHQSPSSSCPVSQLQSP 152
Query: 1189 -RASVGLQGSRS---------LGGARGDKAKLPFSSVLDELMEPTESMPSNAVLVALGKL 1040
SV L S S LG A + P + VALG+L
Sbjct: 153 STCSVSLHQSPSTFSVCSGQGLGTAENASLQPPTPEKSGSFSSSVLDRARISQFVALGEL 212
Query: 1039 EFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILGRDCIDDKDR----- 875
EFRK I + P + + +++ R LG + +
Sbjct: 213 EFRK---------------------ITLLKKRPWLLYGNQVERWLGWELVSVTHSESLPS 251
Query: 874 --LQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADEQAN 701
+QY DWD +T+IY CH A +G+C FKGP L KTHLQRVLGD+NVL V+FA+++++
Sbjct: 252 YLVQYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSD 311
Query: 700 GKLS------IVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVRMES 539
LS + KIAR+GI +GLRRY FFV+KDGGKEE+KKNPT+S+VK YFVRMES
Sbjct: 312 TPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMES 371
Query: 538 NAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIE 359
+A+ID+ PY SN+T+ EAR FMH H V S A YMAR SLILSKTI L +DL +V+++
Sbjct: 372 DAYIDKIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQ 431
Query: 358 RIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLEE--- 188
RI DI CKD G+++Y + KPLIHTDGTGFIS+DLAL+CP N++K L+
Sbjct: 432 RIGDIPCKDIYGNVIY-RDGKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQ 490
Query: 187 --------DDKGGILTESMSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPS 32
+K LT E PLLIQ RLF NG AVKGTFL+NK+LPP TIQIR S
Sbjct: 491 RIPAFEGFQNKTLQLTLPGLELREPPLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDS 550
Query: 31 MIKVESDPKL 2
MIKVE DP L
Sbjct: 551 MIKVEIDPDL 560
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 357 bits (917), Expect = 6e-96
Identities = 200/383 (52%), Positives = 254/383 (66%), Gaps = 13/383 (3%)
Frame = -1
Query: 1117 SSVLDELMEPTESMPSNAVLVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPM 938
SSV+D+ + E A L ALG+LE+R+ F++LSY G ++D++ I+ DLPM
Sbjct: 534 SSVIDKPEDHGE-----AHLAALGELEYRRQFLILSYAGGMKLRDLIVAEAIRHWKDLPM 588
Query: 937 VTFESELWRILGRDCIDDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQK-QKTHL 761
V FES +W LGR CI +DR Y DWDSG T++Y C+ +G+ FKGP L K ++T L
Sbjct: 589 VMFESTVWEHLGRKCISTEDRRLYFDWDSGSTHVYHCYVNVDGSYRFKGPYLYKIRRTLL 648
Query: 760 QRVLGDENVLDVRFADE-----QANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEE 596
Q+ LGD+NVL V+FA E Q+ + + K+AREGI VGLRRYRFFV+KDGG EE
Sbjct: 649 QKELGDDNVLMVKFAKEEVQRGQSGACHNYPTYMKVAREGILVGLRRYRFFVFKDGGNEE 708
Query: 595 RKKNPTSSSVKSYFVRMESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLS 416
+KKNPTSS VK YFVR+ S+A ID+ Y S+ T++EARC FMH HT+ S YMAR S
Sbjct: 709 KKKNPTSSPVKCYFVRVASDAAIDKGVYYRLSHMTMYEARCLFMHAHTLASIDNYMARFS 768
Query: 415 LILSKTIKLDVDLGSVHIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCP 236
LILSKT+ L D V +E I + YC D+ G+ +Y +EKPLIHTDGTGFIS+DLAL CP
Sbjct: 769 LILSKTMSLKADWSLVKVEIIDEEYCLDESGNCIY-RDEKPLIHTDGTGFISEDLALLCP 827
Query: 235 KNIYKRNYL-------LHGVLEEDDKGGILTESMSNTHEAPLLIQCRLFNNGCAVKGTFL 77
K K ++ L E DD G + T E PLLIQCRLF+NG A KGT L
Sbjct: 828 KIEAKGQWISDEHMKGLPDPDELDDTG--KNRAGLRTEEPPLLIQCRLFHNGSASKGTLL 885
Query: 76 INKKLPPCTIQIRPSMIKVESDP 8
+NKKL P IQIRPSM+KV++DP
Sbjct: 886 VNKKLQPNRIQIRPSMLKVKTDP 908
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 357 bits (915), Expect = 1e-95
Identities = 195/364 (53%), Positives = 253/364 (69%), Gaps = 11/364 (3%)
Frame = -1
Query: 1060 LVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFESELWRILG--RDCID 887
LVALG+LEFRKAF++L+Y G N+++V++ + I+ DLPM TFES++W G RD I
Sbjct: 17 LVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFESKIWDAFGCRRDYIK 76
Query: 886 DKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFA--- 716
++DR++Y DWDSG+ +IY CH +G+ FKGP L KQ+ LQR LGD+N+L V+F
Sbjct: 77 EEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLGDDNILMVKFEEVK 136
Query: 715 DEQANGKLSI----VGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKSYFVR 548
DE+ + S+ ++K+ REGI VGLR YRFFV+KDGGKEE+KK+PT+S VK +FV
Sbjct: 137 DERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVC 196
Query: 547 MESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSV 368
MES A +D + I KTI +AR FMHV + S + YMAR SLILSKT+ L+VDL V
Sbjct: 197 MESVASVDNQDN-ILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSFV 255
Query: 367 HIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLEE 188
I+ I D C+DK G+ +Y + KPLIHTDGTGFIS DLALKCPKN K L +E
Sbjct: 256 DIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVKGTCLQASNIER 315
Query: 187 -DDKGGILTESMSNTH-EAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVES 14
++ ++ H + PLLIQ RLFNNG AVKGTFL+NKKL T+ +RPSMIKVE+
Sbjct: 316 LRVHNEVMEQNPECLHGDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVRPSMIKVET 375
Query: 13 DPKL 2
DPKL
Sbjct: 376 DPKL 379
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 353 bits (906), Expect = 1e-94
Identities = 191/364 (52%), Positives = 247/364 (67%), Gaps = 11/364 (3%)
Frame = -1
Query: 1060 LVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDL---PMVTFESELWRILGRDCI 890
L+AL KLEFRK F++L+Y G+ ++DV+ ++ + + D+ PM FES +W G C
Sbjct: 188 LLALNKLEFRKFFLILNYIGRRKVEDVITLHDVGDILDMIYQPMSHFESYIWNKYGHLCE 247
Query: 889 DDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADE 710
+K R+QY DWDSGRT++Y CH S+ + FKGP L+ ++THLQ LGDENVL V+F
Sbjct: 248 HNK-RVQYLDWDSGRTHLYHCHVHSDRSYTFKGPYLKAERTHLQHSLGDENVLIVKFEQN 306
Query: 709 QANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSS--SVKSYFVRMESN 536
IV + GI VGLRRYRFFVYKD GK+ R K+ SVK YFVRMES
Sbjct: 307 TPGCPEEIV------QNGILVGLRRYRFFVYKDDGKKRRLKDKEEKIDSVKCYFVRMESL 360
Query: 535 AFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIER 356
+ ++ YI +K +HEARC FMHVH V S AKYMAR SLILS T+KL VDL SV+I+R
Sbjct: 361 NPYENET-YILHDKMVHEARCNFMHVHMVSSMAKYMARFSLILSTTVKLQVDLNSVNIDR 419
Query: 355 IQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGV------L 194
I+DIYC DK G I+Y+E+ KPLIHTDGTG+IS+DLA KCP++ + + + +
Sbjct: 420 IEDIYCHDKSGRIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHKCANLVRYANGV 479
Query: 193 EEDDKGGILTESMSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKVES 14
+ + L E+ + E PLL+QCRLF NG AVKGT L+N+KLP TIQIRPSMIKVE+
Sbjct: 480 KLGENSSELGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPQRTIQIRPSMIKVEA 539
Query: 13 DPKL 2
DP+L
Sbjct: 540 DPRL 543
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 352 bits (903), Expect = 3e-94
Identities = 196/366 (53%), Positives = 246/366 (67%), Gaps = 13/366 (3%)
Frame = -1
Query: 1060 LVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDL---PMVTFESELWRILGRDCI 890
L+AL KLEFRK F++L+Y G+ ++DV+ ++ + + D+ PM FES +W G C
Sbjct: 244 LLALSKLEFRKFFLILNYIGRRKVEDVIMLHDVGDILDMIYQPMSHFESYIWNKYGHLCE 303
Query: 889 DDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDVRFADE 710
+K R+QY DWDSGRT++Y CH S+G+ FKGP L+ ++THLQ+ LGDENVL V+F
Sbjct: 304 HNK-RVQYLDWDSGRTHLYHCHVHSDGSYTFKGPYLKAERTHLQQSLGDENVLIVKFEQN 362
Query: 709 QANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSS--SVKSYFVRMES- 539
IV + GI VGLRRYRFFVYKD GK+ K+ SVK YFVRMES
Sbjct: 363 TPGCPEEIV------QNGILVGLRRYRFFVYKDDGKKRSSKDKEEKIDSVKCYFVRMESL 416
Query: 538 NAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVDLGSVHIE 359
N + K YI +K +HEARC FMHVH V S AKYMAR SL LS T+KL VDL SV+I+
Sbjct: 417 NPY--EKETYILRDKMVHEARCNFMHVHMVSSMAKYMARFSLTLSTTVKLQVDLNSVNID 474
Query: 358 RIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHGVLEEDDK 179
RI+DI C DK G I+Y+E+ KPLIHTDGTG+IS+DLA KCP++ + + LE
Sbjct: 475 RIEDICCHDKSGRIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHRCAN-LERYTN 533
Query: 178 GGILTESMSNTHEA-------PLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKV 20
G L E+ S EA PLL+QCRLF NG AVKGT L+N+KLP TIQIRPSMIKV
Sbjct: 534 GVKLGENSSELGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRRTIQIRPSMIKV 593
Query: 19 ESDPKL 2
E+DP+L
Sbjct: 594 EADPRL 599
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 349 bits (896), Expect = 2e-93
Identities = 213/507 (42%), Positives = 289/507 (57%), Gaps = 50/507 (9%)
Frame = -1
Query: 1372 LPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLLRQQGG-------------- 1235
LPYSVE L ++C + R+ L+ +GE+ +L++L+
Sbjct: 20 LPYSVETMLEKICNEQGQKPLGTGIRRRLSSIGEKGSLEILKIISSRPIKKSLSAFLVYL 79
Query: 1234 ---FSDHKSAMDTASESRRASVGL-----QGSRSLGGARGDKAKLPFSSV---------- 1109
+ D S+ S +R+S L +G R + G K+KL +
Sbjct: 80 IDRYPDCLSSSPFNSPLKRSSSPLLFPSPEGKR-VQGESPSKSKLEMGFLACASPQKVAR 138
Query: 1108 -LDELMEPTESMPSNAV-----LVALGKLEFRKAFMVLSYCGKNNIKDVMN---VNTIQR 956
L EP + + L+ L +LEFRK F+VLSY G ++D+++ + I R
Sbjct: 139 QLSFREEPESNCRRTSPNVSQQLMILNELEFRKLFLVLSYIGCKKLEDIVSPQIADDIVR 198
Query: 955 MSDLPMVTFESELWRILGRDCIDDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQK 776
+L M FESE+W G+ + DR +Y DW+ +T+IY CH NG C FKGP L
Sbjct: 199 KKNLSMTDFESEIWNAFGKAYYAESDRSKYVDWNCRKTHIYYCHIKQNGQCTFKGPYLNT 258
Query: 775 QKTHLQRVLGDENVLDVRFADEQANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEE 596
+THLQR LGD+NVL V+F ++ + + I EGI VGLRRYRFFVYKD +E
Sbjct: 259 ARTHLQRALGDDNVLLVKFVEDTSCANM-------IVEEGILVGLRRYRFFVYKDD--KE 309
Query: 595 RKKNPT-----SSSVKSYFVRMESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKY 431
+KK+P ++S+K YFVR ES + Y+FS K I +ARC FMHVH V + AKY
Sbjct: 310 KKKSPAMMKKKTASLKCYFVRFESIETCNDGGSYVFSTKRISQARCQFMHVHMVSNMAKY 369
Query: 430 MARLSLILSKTIKLDVDLGSVHIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDL 251
ARLSLILSKTIKL V+L SV IERI+DI C+D+ G I+ +E+ +P IHTDGTGFIS+DL
Sbjct: 370 AARLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKDEDGEPRIHTDGTGFISEDL 429
Query: 250 ALKCPKNIYKRNYL----LHGVLEEDDKGGILTESMSNTHEAPLLIQCRLFNNGCAVKGT 83
A+ CPK+ K Y+ ++ D ES+S E PLL+QCRLF NGCAVKGT
Sbjct: 430 AMHCPKDFVKAEYIKDENYENFVDIVDLDAERRESVSWNREPPLLMQCRLFFNGCAVKGT 489
Query: 82 FLINKKLPPCTIQIRPSMIKVESDPKL 2
FL+N+K+ I IRPSM+KVE DP +
Sbjct: 490 FLVNRKIGSRKIHIRPSMVKVEIDPAI 516
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 345 bits (884), Expect = 4e-92
Identities = 208/496 (41%), Positives = 285/496 (57%), Gaps = 27/496 (5%)
Frame = -1
Query: 1417 SIKSTMANRSS-AEVILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQL---- 1253
+++S N SS + + L +E L + ++L + + R+ L + E A +L
Sbjct: 3 TLRSANHNASSWSRIALSGRIEIALVNIYRQHNLTPINDETRQRLCSIPENLAFELVSDV 62
Query: 1252 LRQQGGFSDHKSAMDTASESRRASVGLQGSRSLGGARGDKAKLPFSSVLDELMEPTESMP 1073
L Q G + + + ++ SV S GG+ V L + S+
Sbjct: 63 LSLQVGVIYNLDSFIVSKVNQAVSVTGSQRLSSGGSSAQPRSPSGRHVCRVLDQDEMSVD 122
Query: 1072 SNAV------------------LVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSD 947
S+A LVALG+LEF+KAF++LSY + +V+ I+R D
Sbjct: 123 SDAPSSKSLQREDVGGTLHIPQLVALGELEFKKAFLLLSYIPGQRLGEVVTAEEIRRWKD 182
Query: 946 LPMVTFESELWRILGRDCIDDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKT 767
LPMV +E+ +W LGR D Q WDSG+T+ Y CH A +G+ FKGP L+ T
Sbjct: 183 LPMVAYEAAVWDSLGRKFCPQTDERVLQ-WDSGKTHYYQCHVAPDGSYTFKGPLLESTGT 241
Query: 766 HLQRVLGDENVLDVRFADEQANGKL----SIVGFHKIAREGICVGLRRYRFFVYKDGGKE 599
HL +VLGDENVL V+FA+ Q N S + IA+ GI VGLRRY+FFV+KDGGK+
Sbjct: 242 HLHKVLGDENVLTVKFANVQKNSSTYCSDSYFTYKGIAKNGIMVGLRRYKFFVFKDGGKD 301
Query: 598 ERKKNPTSSSVKSYFVRMESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARL 419
++ K+ ++ K YF+R +S A ID + PYIFS K+IHEAR FMHVHT+ S A YMAR
Sbjct: 302 DKNKDVSTKRAKCYFIRTDSTASIDMEKPYIFSGKSIHEARMHFMHVHTLPSLANYMARF 361
Query: 418 SLILSKTIKLDVDLGSVHIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKC 239
SLILSKT KL+VDL V+ E I+DI C D+ G + ++ +KP IH+DGTG+IS+DLA C
Sbjct: 362 SLILSKTKKLEVDLTGVNFEIIKDIPCHDQDGKDVLDKNKKPRIHSDGTGYISEDLAQMC 421
Query: 238 PKNIYKRNYLLHGVLEEDDKGGILTESMSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLP 59
P NIYK L ++E + E PLLIQ R+F NG A+KGTFL+NKK+P
Sbjct: 422 PVNIYKGKCLRSDKIKE-----------ACGQEPPLLIQFRMFYNGYAIKGTFLLNKKIP 470
Query: 58 PCTIQIRPSMIKVESD 11
T+Q+RPSMIKV D
Sbjct: 471 SRTVQVRPSMIKVLPD 486
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 338 bits (867), Expect = 4e-90
Identities = 203/492 (41%), Positives = 281/492 (57%), Gaps = 26/492 (5%)
Frame = -1
Query: 1399 ANRSSAEVILPYSVEETLRRVCELYSLPLPSSKQRKELAELGEERALQLLRQ----QGGF 1232
A + + + L +E L + ++L + + R+ L+ + E +L+R Q G
Sbjct: 7 AASTRSRIALSGRIETALENIYRKFNLTPINDETRQRLSSIPENLGFELVRNVFSLQAGL 66
Query: 1231 ---------SDHKSAMDTASESRRAS-VGLQGSRSLGGARGDKAKLPFSSVLDELMEPTE 1082
S A++ R +S V SRS G + SV + P +
Sbjct: 67 IYNLDSFIVSKVNQAVNFTGYPRLSSGVSPANSRSPSGRHVCRVLQEEMSVDSDAPSP-K 125
Query: 1081 SMPSNA--------VLVALGKLEFRKAFMVLSYCGKNNIKDVMNVNTIQRMSDLPMVTFE 926
S+ S LVALG+LEF+KAF++LSY + V + I+ DLPMV +E
Sbjct: 126 SLKSEENGGSLHIPQLVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDLPMVAYE 185
Query: 925 SELWRILGRDCIDDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLG 746
+ +W LGR DR Q WDSG+T+ Y CH A +G+ FKGP L+ THL +VLG
Sbjct: 186 AAVWDRLGRRYCPQTDRRMLQ-WDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLG 244
Query: 745 DENVLDVRFADEQANGKL----SIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPT 578
DENVL V+FAD N + +IA+ GI +GLRRY+FFV+KDGGKEE+KK+ +
Sbjct: 245 DENVLTVKFADVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLS 304
Query: 577 SSSVKSYFVRMESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKT 398
+ VK YF+R +S A D ++PYIF+ K+IHEAR FMHVH + A YMAR SLILSKT
Sbjct: 305 TKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKT 364
Query: 397 IKLDVDLGSVHIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKR 218
L+VD+ + + I DI+C D+ G + ++ +KP IH+DGTG+IS+DLA CP NI+K
Sbjct: 365 KTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKG 424
Query: 217 NYLLHGVLEEDDKGGILTESMSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIR 38
L ++E + + PLLIQ R+F +G AVKGTFL+NKKL P T+Q+R
Sbjct: 425 KCLRSENIQE-----------ACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVR 473
Query: 37 PSMIKVESDPKL 2
PSMIKV DP L
Sbjct: 474 PSMIKVSKDPSL 485
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 333 bits (854), Expect = 1e-88
Identities = 200/486 (41%), Positives = 289/486 (59%), Gaps = 25/486 (5%)
Frame = -1
Query: 1384 AEVILPYSVEETLRRVCELYSLPLPSSKQ-RKELAELGEERALQLLRQQGGFSDHKSAMD 1208
+E+ L SVE L ++ E ++ LP S + R++L+ + EE AL+ LR+ K+
Sbjct: 13 SEIALLGSVETMLEKIYEKHNHRLPISVETRRKLSSISEELALETLRKVFNKPYLKTLDG 72
Query: 1207 TASESRRASVGLQGSRSLGGARG----------------DKAKLPFSSVLDELMEPTESM 1076
+ +V + GS L L + + M+ E+
Sbjct: 73 LIMYFVKGTVTVDGSPRLSPGESPVQSPRTPAKKSCRASQDVSLDLETPSPKFMKREENG 132
Query: 1075 PSNAV--LVALGKLEFRKAFMVLSYCGKNN-IKDVMNVNTIQRMSDLPMVTFESELWRIL 905
S + L+ALG+LEF+KAF++LSY G + +++V++ + I++ DLPMV++E+ +W L
Sbjct: 133 GSKYIPPLLALGELEFKKAFLLLSYIGGESLVEEVISGDQIRKWKDLPMVSYEAAVWNRL 192
Query: 904 GRDCIDDKDRLQYQDWDSGRTYIYCCHAASNGTCIFKGPTLQKQKTHLQRVLGDENVLDV 725
G+ K+R + + DSG T+ Y CH A++G+ FKG L+ THL +VLGD+NVL V
Sbjct: 193 GQRYCSPKERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTV 252
Query: 724 RF-----ADEQANGKLSIVGFHKIAREGICVGLRRYRFFVYKDGGKEERKKNPTSSSVKS 560
+F + N S + IA+ GI VGLRRYRFFV+KDGGKEE+KK+ ++ VK
Sbjct: 253 KFDKVLGVETYCNDLYST--YKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKC 310
Query: 559 YFVRMESNAFIDRKSPYIFSNKTIHEARCTFMHVHTVGSFAKYMARLSLILSKTIKLDVD 380
YF+R +S A ID ++PYIF+ K++HEAR FMHV+T+ S YM+R SLILSKT L+VD
Sbjct: 311 YFIRTDSTASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVD 370
Query: 379 LGSVHIERIQDIYCKDKKGDILYNEEEKPLIHTDGTGFISQDLALKCPKNIYKRNYLLHG 200
+ + E+I DI+C D+ + ++ KP IH+DGTG+IS+DLA CP NI+K +
Sbjct: 371 MTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSN 430
Query: 199 VLEEDDKGGILTESMSNTHEAPLLIQCRLFNNGCAVKGTFLINKKLPPCTIQIRPSMIKV 20
++ K E PLLIQ R+F NG AVKGTFL NKKLPP T+Q+RPSMIKV
Sbjct: 431 NIQ--SKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKV 488
Query: 19 ESDPKL 2
D L
Sbjct: 489 YEDRTL 494