BLASTX nr result
ID: Cocculus23_contig00019069
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00019069
(677 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006355061.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and... 134 4e-29
ref|XP_004237193.1| PREDICTED: cleavage and polyadenylation spec... 134 4e-29
ref|XP_006583716.1| PREDICTED: E3 ubiquitin protein ligase RIE1-... 132 1e-28
ref|XP_006469322.1| PREDICTED: cleavage and polyadenylation spec... 132 1e-28
ref|XP_006448162.1| hypothetical protein CICLE_v10015731mg [Citr... 132 1e-28
ref|XP_002526000.1| cleavage and polyadenylation specificity fac... 131 2e-28
ref|XP_007223310.1| hypothetical protein PRUPE_ppa007296mg [Prun... 131 2e-28
ref|XP_007045267.1| Zinc finger, C3HC4 type (RING finger) family... 130 4e-28
ref|XP_004498249.1| PREDICTED: E3 ubiquitin protein ligase RIE1-... 130 4e-28
ref|XP_003518612.1| PREDICTED: E3 ubiquitin protein ligase RIE1-... 130 5e-28
ref|XP_007153246.1| hypothetical protein PHAVU_003G019100g [Phas... 129 1e-27
ref|XP_007153245.1| hypothetical protein PHAVU_003G019100g [Phas... 129 1e-27
ref|XP_002314782.2| hypothetical protein POPTR_0010s11660g [Popu... 129 1e-27
gb|AFK39085.1| unknown [Lotus japonicus] 128 1e-27
gb|EXC54203.1| E3 ubiquitin protein ligase RIE1 [Morus notabilis] 128 2e-27
ref|XP_006395857.1| hypothetical protein EUTSA_v10004486mg [Eutr... 127 3e-27
ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261... 127 3e-27
ref|XP_006291380.1| hypothetical protein CARUB_v10017517mg [Caps... 127 4e-27
ref|NP_849924.1| E3 ubiquitin protein ligase RIE1 [Arabidopsis t... 126 7e-27
ref|XP_007160430.1| hypothetical protein PHAVU_002G321300g [Phas... 125 1e-26
>ref|XP_006355061.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II-like [Solanum tuberosum]
Length = 948
Score = 134 bits (336), Expect = 4e-29
Identities = 62/84 (73%), Positives = 69/84 (82%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
KP G G M PI G A ER+LL EDAECCICL+SY+DG ELHALPC+HHFH+TCIV
Sbjct: 866 KPRVGAGRMVPIETSSGYLATERILLPEDAECCICLTSYEDGAELHALPCNHHFHSTCIV 925
Query: 174 KWLKINASCPLCKYNILKGNSDQV 245
KWLK+NA+CPLCKYNILKGN DQV
Sbjct: 926 KWLKMNATCPLCKYNILKGN-DQV 948
>ref|XP_004237193.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Solanum lycopersicum]
Length = 1043
Score = 134 bits (336), Expect = 4e-29
Identities = 62/84 (73%), Positives = 69/84 (82%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
KP G G M PI G A ER+LL EDAECCICL+SY+DG ELHALPC+HHFH+TCIV
Sbjct: 961 KPRVGAGRMVPIETSSGYLATERILLPEDAECCICLTSYEDGAELHALPCNHHFHSTCIV 1020
Query: 174 KWLKINASCPLCKYNILKGNSDQV 245
KWLK+NA+CPLCKYNILKGN DQV
Sbjct: 1021 KWLKMNATCPLCKYNILKGN-DQV 1043
>ref|XP_006583716.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like isoform X1
[Glycine max] gi|571466652|ref|XP_006583717.1|
PREDICTED: E3 ubiquitin protein ligase RIE1-like isoform
X2 [Glycine max]
Length = 356
Score = 132 bits (332), Expect = 1e-28
Identities = 59/80 (73%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
KPS G GSM PI A+ER LL EDAECCICL SY+DG ELHALPC+HHFH++CIV
Sbjct: 274 KPSGGAGSMVPIETSSAYLANERTLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIV 333
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 334 KWLKMNATCPLCKYNILKGN 353
>ref|XP_006469322.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Citrus sinensis]
Length = 1019
Score = 132 bits (332), Expect = 1e-28
Identities = 59/76 (77%), Positives = 66/76 (86%), Gaps = 3/76 (3%)
Frame = +3
Query: 15 GTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIVKWLK 185
G G M PI G A+ER+LL EDAECCICLSSY+DGTELHALPC+HHFH+TCIVKWLK
Sbjct: 941 GAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK 1000
Query: 186 INASCPLCKYNILKGN 233
+NA+CPLCKYNILKGN
Sbjct: 1001 MNATCPLCKYNILKGN 1016
>ref|XP_006448162.1| hypothetical protein CICLE_v10015731mg [Citrus clementina]
gi|557550773|gb|ESR61402.1| hypothetical protein
CICLE_v10015731mg [Citrus clementina]
Length = 359
Score = 132 bits (332), Expect = 1e-28
Identities = 59/76 (77%), Positives = 66/76 (86%), Gaps = 3/76 (3%)
Frame = +3
Query: 15 GTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIVKWLK 185
G G M PI G A+ER+LL EDAECCICLSSY+DGTELHALPC+HHFH+TCIVKWLK
Sbjct: 281 GAGKMVPIETNGGYVANERILLPEDAECCICLSSYEDGTELHALPCNHHFHSTCIVKWLK 340
Query: 186 INASCPLCKYNILKGN 233
+NA+CPLCKYNILKGN
Sbjct: 341 MNATCPLCKYNILKGN 356
>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis] gi|223534732|gb|EEF36424.1| cleavage and
polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 131 bits (330), Expect = 2e-28
Identities = 58/80 (72%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
KPS G G M PI G A+ER+LL EDAECCICL Y+DG ELH LPC+HHFH+TCIV
Sbjct: 881 KPSVGAGKMVPIETSSGYLANERILLPEDAECCICLCPYEDGAELHTLPCNHHFHSTCIV 940
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 941 KWLKMNATCPLCKYNILKGN 960
>ref|XP_007223310.1| hypothetical protein PRUPE_ppa007296mg [Prunus persica]
gi|462420246|gb|EMJ24509.1| hypothetical protein
PRUPE_ppa007296mg [Prunus persica]
Length = 374
Score = 131 bits (329), Expect = 2e-28
Identities = 59/80 (73%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
K S G G M P+ G A ER+LL EDAECCICLS Y+DGTELH LPC+HHFHATCIV
Sbjct: 292 KSSVGAGKMIPVETSSGYLAIERILLPEDAECCICLSPYEDGTELHTLPCNHHFHATCIV 351
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 352 KWLKMNATCPLCKYNILKGN 371
>ref|XP_007045267.1| Zinc finger, C3HC4 type (RING finger) family protein isoform 1
[Theobroma cacao] gi|508709202|gb|EOY01099.1| Zinc
finger, C3HC4 type (RING finger) family protein isoform
1 [Theobroma cacao]
Length = 360
Score = 130 bits (327), Expect = 4e-28
Identities = 57/80 (71%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
K S G G M P+ G A+ER+LL EDAECCICLSSY+DG +LHALPC+HHFH+ CIV
Sbjct: 279 KASVGAGKMVPVETSSGYLANERILLPEDAECCICLSSYEDGADLHALPCNHHFHSACIV 338
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 339 KWLKMNATCPLCKYNILKGN 358
>ref|XP_004498249.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Cicer arietinum]
Length = 349
Score = 130 bits (327), Expect = 4e-28
Identities = 58/80 (72%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
K S G GSM PI G A+ER+LL EDAECCICL Y+DGTELH LPC+HHFH++CIV
Sbjct: 267 KASGGAGSMVPIETTSGYLANERMLLPEDAECCICLCPYEDGTELHTLPCNHHFHSSCIV 326
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 327 KWLKMNATCPLCKYNILKGN 346
>ref|XP_003518612.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Glycine max]
Length = 357
Score = 130 bits (326), Expect = 5e-28
Identities = 59/80 (73%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPICGEFA---DERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
KPS G GSM PI A +ER LL EDAECCICL SY+DG ELHALPC+HHFH++CIV
Sbjct: 275 KPSGGAGSMVPIETSSAYLENERTLLLEDAECCICLCSYEDGAELHALPCNHHFHSSCIV 334
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 335 KWLKMNATCPLCKYNILKGN 354
>ref|XP_007153246.1| hypothetical protein PHAVU_003G019100g [Phaseolus vulgaris]
gi|561026600|gb|ESW25240.1| hypothetical protein
PHAVU_003G019100g [Phaseolus vulgaris]
Length = 342
Score = 129 bits (323), Expect = 1e-27
Identities = 58/80 (72%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
K S G GSM PI A ER+LL EDAECCICL SY+DG ELHALPC+HHFH++CIV
Sbjct: 260 KSSGGGGSMVPIETSSAYLATERILLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIV 319
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 320 KWLKMNATCPLCKYNILKGN 339
>ref|XP_007153245.1| hypothetical protein PHAVU_003G019100g [Phaseolus vulgaris]
gi|561026599|gb|ESW25239.1| hypothetical protein
PHAVU_003G019100g [Phaseolus vulgaris]
Length = 271
Score = 129 bits (323), Expect = 1e-27
Identities = 58/80 (72%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
K S G GSM PI A ER+LL EDAECCICL SY+DG ELHALPC+HHFH++CIV
Sbjct: 189 KSSGGGGSMVPIETSSAYLATERILLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIV 248
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 249 KWLKMNATCPLCKYNILKGN 268
>ref|XP_002314782.2| hypothetical protein POPTR_0010s11660g [Populus trichocarpa]
gi|550329589|gb|EEF00953.2| hypothetical protein
POPTR_0010s11660g [Populus trichocarpa]
Length = 327
Score = 129 bits (323), Expect = 1e-27
Identities = 57/80 (71%), Positives = 64/80 (80%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
+P G G M P+ G + ERVLL EDAECCICLS Y+DG ELHALPC+HHFHA CIV
Sbjct: 245 RPRVGAGKMVPVETSSGYLSTERVLLPEDAECCICLSPYEDGAELHALPCNHHFHAMCIV 304
Query: 174 KWLKINASCPLCKYNILKGN 233
KWLK+NA+CPLCKYNILKGN
Sbjct: 305 KWLKMNATCPLCKYNILKGN 324
>gb|AFK39085.1| unknown [Lotus japonicus]
Length = 89
Score = 128 bits (322), Expect = 1e-27
Identities = 57/79 (72%), Positives = 66/79 (83%), Gaps = 3/79 (3%)
Frame = +3
Query: 6 PSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIVK 176
PS G GSM P+ G A+ER L EDAECCIC+SSY+DG ELH+LPC+HHFH+TCIVK
Sbjct: 8 PSEGGGSMVPLETGIGFPANERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCIVK 67
Query: 177 WLKINASCPLCKYNILKGN 233
WLK+NA+CPLCKYNILKGN
Sbjct: 68 WLKMNATCPLCKYNILKGN 86
>gb|EXC54203.1| E3 ubiquitin protein ligase RIE1 [Morus notabilis]
Length = 428
Score = 128 bits (321), Expect = 2e-27
Identities = 57/84 (67%), Positives = 66/84 (78%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
KPS G G+M P+ A ER+LL EDAECCICLSSY+DG ELHALPC+HHFH+ CIV
Sbjct: 328 KPSLGEGTMVPVETSSRYLATERILLPEDAECCICLSSYEDGAELHALPCNHHFHSACIV 387
Query: 174 KWLKINASCPLCKYNILKGNSDQV 245
KWL +NA+CPLCKYNILKG+ V
Sbjct: 388 KWLTMNATCPLCKYNILKGSEQNV 411
>ref|XP_006395857.1| hypothetical protein EUTSA_v10004486mg [Eutrema salsugineum]
gi|557092496|gb|ESQ33143.1| hypothetical protein
EUTSA_v10004486mg [Eutrema salsugineum]
Length = 356
Score = 127 bits (319), Expect = 3e-27
Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 KPSSGTGSMAPI-----CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATC 167
K ++GTG M P+ C A ER LL+EDA+CCICLSSY+DG ELHALPC+HHFH+ C
Sbjct: 273 KNTTGTGKMVPVPINGLC--LATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSNC 330
Query: 168 IVKWLKINASCPLCKYNILKGNSDQ 242
IVKWLK+ A+CPLCKYNILKG +DQ
Sbjct: 331 IVKWLKMRATCPLCKYNILKGTTDQ 355
>ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 127 bits (319), Expect = 3e-27
Identities = 58/84 (69%), Positives = 68/84 (80%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPI---CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
K G G+M P G A+ER+LL EDAECCICLSSY+DG ELHALPC+HHFH+TCI
Sbjct: 2217 KSGVGAGTMIPTETSSGYLANERILLPEDAECCICLSSYEDGAELHALPCNHHFHSTCIA 2276
Query: 174 KWLKINASCPLCKYNILKGNSDQV 245
KWLK+NA+CPLCKYNILKG S+Q+
Sbjct: 2277 KWLKMNATCPLCKYNILKG-SEQI 2299
>ref|XP_006291380.1| hypothetical protein CARUB_v10017517mg [Capsella rubella]
gi|482560087|gb|EOA24278.1| hypothetical protein
CARUB_v10017517mg [Capsella rubella]
Length = 358
Score = 127 bits (318), Expect = 4e-27
Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 3/83 (3%)
Frame = +3
Query: 3 KPSSGTGSMAPICGE---FADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIV 173
K +G G M P+ A ER LL+EDA+CCICLSSY+DG ELHALPC+HHFH+TCIV
Sbjct: 275 KNIAGPGKMVPVSTNGICLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIV 334
Query: 174 KWLKINASCPLCKYNILKGNSDQ 242
KWLK+ A+CPLCKYNILKG +DQ
Sbjct: 335 KWLKMRATCPLCKYNILKGTTDQ 357
>ref|NP_849924.1| E3 ubiquitin protein ligase RIE1 [Arabidopsis thaliana]
gi|75299491|sp|Q8GUU2.1|RIE1_ARATH RecName: Full=E3
ubiquitin protein ligase RIE1; AltName: Full=Protein
RING-FINGER FOR EMBRYOGENESIS 1
gi|27372067|gb|AAN87884.1| RES protein [Arabidopsis
thaliana] gi|330250396|gb|AEC05490.1| E3 ubiquitin
protein ligase RIE1 [Arabidopsis thaliana]
Length = 359
Score = 126 bits (316), Expect = 7e-27
Identities = 58/85 (68%), Positives = 67/85 (78%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 KPSSGTGSMAPI-----CGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATC 167
K +G G M PI C A ER LL+EDA+CCICLSSY+DG ELHALPC+HHFH+TC
Sbjct: 276 KNITGPGKMVPIPINGLC--LATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTC 333
Query: 168 IVKWLKINASCPLCKYNILKGNSDQ 242
IVKWLK+ A+CPLCKYNILKG +DQ
Sbjct: 334 IVKWLKMRATCPLCKYNILKGTTDQ 358
>ref|XP_007160430.1| hypothetical protein PHAVU_002G321300g [Phaseolus vulgaris]
gi|561033845|gb|ESW32424.1| hypothetical protein
PHAVU_002G321300g [Phaseolus vulgaris]
Length = 345
Score = 125 bits (315), Expect = 1e-26
Identities = 55/79 (69%), Positives = 65/79 (82%), Gaps = 3/79 (3%)
Frame = +3
Query: 6 PSSGTGSMAP---ICGEFADERVLLSEDAECCICLSSYDDGTELHALPCSHHFHATCIVK 176
PS G GSM P I G +ER+L +DAECCIC+SSY+DG ELH LPC+HHFH+TCIVK
Sbjct: 264 PSKGGGSMIPVETINGYSVNERILSPDDAECCICISSYEDGAELHVLPCNHHFHSTCIVK 323
Query: 177 WLKINASCPLCKYNILKGN 233
WLK+NA+CPLCK+NILKGN
Sbjct: 324 WLKMNATCPLCKFNILKGN 342