BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00019003
         (260 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Me...    60   4e-07
ref|XP_003605160.1| Pentatricopeptide repeat-containing protein ...    60   4e-07
ref|NP_187952.1| S-adenosyl-L-methionine-dependent methyltransfe...    56   5e-06
ref|XP_002882825.1| hypothetical protein ARALYDRAFT_318122 [Arab...    56   6e-06

>gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
 Frame = +1

Query: 28  AVPSRQGSVNVGASGMEPYNIELDSGNSCLSSIR------TREGSKSKNSSVPFKMPPKS 189
           + P     + VG S      +++D  +S L  I+      T + + S+N    FK   K+
Sbjct: 665 SAPKLSMDLKVGRSWHYERRLDIDQSDSALELIKSSYLHITIKLNNSENGKASFKDLSKT 724

Query: 190 AQIRLVSGHPEVYEPCDDSFALV 258
           AQIRLVS H EVYEPCDDSFALV
Sbjct: 725 AQIRLVSSHNEVYEPCDDSFALV 747


>ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355506215|gb|AES87357.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
 Frame = +1

Query: 28  AVPSRQGSVNVGASGMEPYNIELDSGNSCLSSIR------TREGSKSKNSSVPFKMPPKS 189
           + P     + VG S      +++D  +S L  I+      T + + S+N    FK   K+
Sbjct: 720 SAPKLSMDLKVGRSWHYERRLDIDQSDSALELIKSSYLHITIKLNNSENGKASFKDLSKT 779

Query: 190 AQIRLVSGHPEVYEPCDDSFALV 258
           AQIRLVS H EVYEPCDDSFALV
Sbjct: 780 AQIRLVSSHNEVYEPCDDSFALV 802


>ref|NP_187952.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana] gi|18377858|gb|AAL67115.1|
           AT3g13440/MRP15_7 [Arabidopsis thaliana]
           gi|20453313|gb|AAM19895.1| AT3g13440/MRP15_7
           [Arabidopsis thaliana] gi|332641833|gb|AEE75354.1|
           S-adenosyl-L-methionine-dependent methyltransferase-like
           protein [Arabidopsis thaliana]
          Length = 278

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = +1

Query: 154 NSSVPFKMPPKSAQIRLVSGHPEVYEPCDDSFALV 258
           +S V +KMPP+ A IRLVS H EVYEPCDDSFALV
Sbjct: 26  HSQVIYKMPPRIAAIRLVSSHREVYEPCDDSFALV 60


>ref|XP_002882825.1| hypothetical protein ARALYDRAFT_318122 [Arabidopsis lyrata subsp.
           lyrata] gi|297328665|gb|EFH59084.1| hypothetical protein
           ARALYDRAFT_318122 [Arabidopsis lyrata subsp. lyrata]
          Length = 278

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = +1

Query: 154 NSSVPFKMPPKSAQIRLVSGHPEVYEPCDDSFALV 258
           +S V +KMPP+ A IRLVS H EVYEPCDDSFALV
Sbjct: 26  HSPVIYKMPPRIAAIRLVSSHREVYEPCDDSFALV 60