BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00018216
         (1053 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   116   2e-23
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   116   2e-23
ref|XP_007017901.1| Pseudouridine synthase family protein isofor...   115   4e-23
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   115   4e-23
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S...   113   1e-22
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   112   3e-22
ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl...   112   3e-22
ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chlor...   112   3e-22
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   111   6e-22
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g...   110   7e-22
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   110   7e-22
ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phas...   109   2e-21
ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phas...   109   2e-21
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   108   3e-21
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   108   3e-21
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   108   4e-21
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   107   6e-21
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   107   8e-21
gb|EMS58535.1| RNA pseudourine synthase 2, chloroplastic [Tritic...   107   1e-20
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   106   1e-20

>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  116 bits (290), Expect = 2e-23
 Identities = 54/78 (69%), Positives = 62/78 (79%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTKSMAMSLL+ +  +NC   L +LVS L+RPCLHALTLGF HPHTG+ ++FSC
Sbjct: 346  GDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSC 405

Query: 872  PPPLDFAEILCLLRSIST 819
            PPP DF EIL  LR I T
Sbjct: 406  PPPTDFTEILSQLREIGT 423


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  116 bits (290), Expect = 2e-23
 Identities = 54/78 (69%), Positives = 62/78 (79%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTKSMAMSLL+ +  +NC   L +LVS L+RPCLHALTLGF HPHTG+ ++FSC
Sbjct: 347  GDEVYGGTKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSC 406

Query: 872  PPPLDFAEILCLLRSIST 819
            PPP DF EIL  LR I T
Sbjct: 407  PPPTDFTEILSQLREIGT 424


>ref|XP_007017901.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao] gi|508723229|gb|EOY15126.1| Pseudouridine synthase
            family protein isoform 2, partial [Theobroma cacao]
          Length = 409

 Score =  115 bits (287), Expect = 4e-23
 Identities = 55/85 (64%), Positives = 67/85 (78%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTKSMA+SLL+P+TP N    LS+LVS+L+RP LHAL LGF+HPH+ E++ FSC
Sbjct: 325  GDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSC 384

Query: 872  PPPLDFAEILCLLRSISTVMPSVKK 798
             PP DFAEIL  LR I T  P+ K+
Sbjct: 385  QPPPDFAEILSDLRKIGTEKPTFKE 409


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508723228|gb|EOY15125.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  115 bits (287), Expect = 4e-23
 Identities = 55/85 (64%), Positives = 67/85 (78%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTKSMA+SLL+P+TP N    LS+LVS+L+RP LHAL LGF+HPH+ E++ FSC
Sbjct: 349  GDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSC 408

Query: 872  PPPLDFAEILCLLRSISTVMPSVKK 798
             PP DFAEIL  LR I T  P+ K+
Sbjct: 409  QPPPDFAEILSDLRKIGTEKPTFKE 433


>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
            gi|241917257|gb|EER90401.1| hypothetical protein
            SORBIDRAFT_10g030300 [Sorghum bicolor]
          Length = 441

 Score =  113 bits (283), Expect = 1e-22
 Identities = 49/78 (62%), Positives = 65/78 (83%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDE YGGTKSMA+SLL+P+TP+    +LS L+SK+ RPCLHA  LGFKHPH+G++L+FSC
Sbjct: 354  GDETYGGTKSMALSLLRPRTPSKYHSDLSNLISKVDRPCLHAALLGFKHPHSGKILEFSC 413

Query: 872  PPPLDFAEILCLLRSIST 819
            PPP DF+E+L  LR +++
Sbjct: 414  PPPDDFSEVLDELRKVTS 431


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  112 bits (279), Expect = 3e-22
 Identities = 54/78 (69%), Positives = 59/78 (75%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTK+MA SLLQP+T       + KLVS LQRPCLHA+ LGF HPHT E +QFSC
Sbjct: 338  GDEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSC 397

Query: 872  PPPLDFAEILCLLRSIST 819
            PPP DFAEIL  LR I T
Sbjct: 398  PPPADFAEILSQLREIGT 415


>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Setaria
            italica]
          Length = 437

 Score =  112 bits (279), Expect = 3e-22
 Identities = 49/78 (62%), Positives = 63/78 (80%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDE YGGTKSMA+SLL+P+TP+     LS L+SK+ RPCLHA  LGFKHPH+G++L+FSC
Sbjct: 349  GDETYGGTKSMALSLLRPRTPSKYHSGLSDLISKVDRPCLHAALLGFKHPHSGKILEFSC 408

Query: 872  PPPLDFAEILCLLRSIST 819
            PPP DF E+L  LR +++
Sbjct: 409  PPPDDFTEVLDELRRVTS 426


>ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
            [Brachypodium distachyon]
          Length = 439

 Score =  112 bits (279), Expect = 3e-22
 Identities = 50/82 (60%), Positives = 65/82 (79%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDE YGG+KSMA+SLL+P+TP+    +LS L+SK+ RPCLHA  LGFKHPH+G++L+FSC
Sbjct: 348  GDETYGGSKSMALSLLRPRTPSRYHGDLSNLISKIDRPCLHAALLGFKHPHSGKMLEFSC 407

Query: 872  PPPLDFAEILCLLRSISTVMPS 807
            PPP DFAE+L  LR ++    S
Sbjct: 408  PPPDDFAEVLDELRRVTPTSDS 429


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  111 bits (277), Expect = 6e-22
 Identities = 52/85 (61%), Positives = 63/85 (74%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDE+YGGTKSM +SLL+P+TP +    + K+VS+L RPCLHA TLGF+HPHTGE + FSC
Sbjct: 362  GDELYGGTKSMVLSLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSC 421

Query: 872  PPPLDFAEILCLLRSISTVMPSVKK 798
             PP DFAEIL  LR I +   S  K
Sbjct: 422  EPPADFAEILSQLRRIGSETVSFTK 446


>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
            gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|53791796|dbj|BAD53590.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|54291043|dbj|BAD61720.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa
            Japonica Group] gi|215706335|dbj|BAG93191.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222636236|gb|EEE66368.1| hypothetical protein
            OsJ_22675 [Oryza sativa Japonica Group]
          Length = 445

 Score =  110 bits (276), Expect = 7e-22
 Identities = 47/77 (61%), Positives = 62/77 (80%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDE YGGTKSMA+SLL+P+TP+    +LS ++SK+ RPCLHA  LGFKHPH+G++L+FSC
Sbjct: 353  GDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSC 412

Query: 872  PPPLDFAEILCLLRSIS 822
            PPP DF E+L  L  ++
Sbjct: 413  PPPDDFTEVLNELHQVT 429


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  110 bits (276), Expect = 7e-22
 Identities = 47/77 (61%), Positives = 62/77 (80%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDE YGGTKSMA+SLL+P+TP+    +LS ++SK+ RPCLHA  LGFKHPH+G++L+FSC
Sbjct: 353  GDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSC 412

Query: 872  PPPLDFAEILCLLRSIS 822
            PPP DF E+L  L  ++
Sbjct: 413  PPPDDFTEVLNELHQVT 429


>ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009207|gb|ESW08114.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  109 bits (272), Expect = 2e-21
 Identities = 51/85 (60%), Positives = 63/85 (74%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTKSM +SLL+P++P +    + ++VS L RPCLHALTLGF+HPHTGE + FSC
Sbjct: 359  GDEVYGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSC 418

Query: 872  PPPLDFAEILCLLRSISTVMPSVKK 798
             PP+DF EIL  LR I +   S  K
Sbjct: 419  EPPVDFDEILSQLRRIGSESVSFSK 443


>ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
            gi|561009206|gb|ESW08113.1| hypothetical protein
            PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  109 bits (272), Expect = 2e-21
 Identities = 51/85 (60%), Positives = 63/85 (74%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTKSM +SLL+P++P +    + ++VS L RPCLHALTLGF+HPHTGE + FSC
Sbjct: 370  GDEVYGGTKSMVLSLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSC 429

Query: 872  PPPLDFAEILCLLRSISTVMPSVKK 798
             PP+DF EIL  LR I +   S  K
Sbjct: 430  EPPVDFDEILSQLRRIGSESVSFSK 454


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
            brachyantha]
          Length = 442

 Score =  108 bits (271), Expect = 3e-21
 Identities = 47/77 (61%), Positives = 62/77 (80%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDE YGGTKSMA+SLL+P+T +    +LS L++K+ RPCLHA  LGFKHPH+G++L+FSC
Sbjct: 351  GDETYGGTKSMALSLLRPRTSSRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSC 410

Query: 872  PPPLDFAEILCLLRSIS 822
            PPP DF E+L  LR ++
Sbjct: 411  PPPDDFTEVLNELRRVT 427


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  108 bits (271), Expect = 3e-21
 Identities = 53/78 (67%), Positives = 63/78 (80%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTK+MA+SLLQPKTP      LS+LVS++ RPCLHALTLGF+HP TGE + F+ 
Sbjct: 350  GDEVYGGTKNMALSLLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTR 409

Query: 872  PPPLDFAEILCLLRSIST 819
             PP DFAEIL  LR+I+T
Sbjct: 410  LPPPDFAEILSYLRAINT 427


>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
            gi|548833830|gb|ERM96267.1| hypothetical protein
            AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  108 bits (270), Expect = 4e-21
 Identities = 51/76 (67%), Positives = 63/76 (82%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTKSMA+S L+P+TP++    LS+LVS LQRPCLHA +LGFKHPH+ E + F+C
Sbjct: 356  GDEVYGGTKSMALSRLRPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTC 415

Query: 872  PPPLDFAEILCLLRSI 825
            PPP DFAE+L  L+SI
Sbjct: 416  PPPPDFAEVLRQLQSI 431


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
            lycopersicum]
          Length = 436

 Score =  107 bits (268), Expect = 6e-21
 Identities = 53/78 (67%), Positives = 62/78 (79%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTK+MA+SLLQPKTP      LS+LVS++ RPCLHALTLGF+HP TGE + F+ 
Sbjct: 350  GDEVYGGTKNMALSLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTR 409

Query: 872  PPPLDFAEILCLLRSIST 819
             PP DFAEIL  LR+I T
Sbjct: 410  LPPPDFAEILSELRAIKT 427


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
            arietinum]
          Length = 438

 Score =  107 bits (267), Expect = 8e-21
 Identities = 48/76 (63%), Positives = 61/76 (80%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTK+M +SLL+P+T  +    ++K+VS+L RPCLHA+TLGF+HPHTGE + FSC
Sbjct: 360  GDEVYGGTKNMVLSLLRPRTTPSLHGEMTKMVSELDRPCLHAMTLGFQHPHTGEQVHFSC 419

Query: 872  PPPLDFAEILCLLRSI 825
             PP+DF EIL  LR I
Sbjct: 420  EPPVDFNEILSQLRRI 435


>gb|EMS58535.1| RNA pseudourine synthase 2, chloroplastic [Triticum urartu]
          Length = 485

 Score =  107 bits (266), Expect = 1e-20
 Identities = 47/68 (69%), Positives = 57/68 (83%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDE YGGTKSMA+SLL+P+TP+    +L+ LVSK+ RPCLHA  LGFKHPH+G+VL+FSC
Sbjct: 310  GDETYGGTKSMALSLLRPRTPSKYHGDLTNLVSKIDRPCLHAALLGFKHPHSGKVLEFSC 369

Query: 872  PPPLDFAE 849
            PPP DF E
Sbjct: 370  PPPDDFTE 377


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  106 bits (265), Expect = 1e-20
 Identities = 50/78 (64%), Positives = 62/78 (79%)
 Frame = -2

Query: 1052 GDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPHTGEVLQFSC 873
            GDEVYGGTK+MA+SLL+P+ P++    L++LVS+L RPCLHA+ LGF HP TG+ + FSC
Sbjct: 348  GDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSC 407

Query: 872  PPPLDFAEILCLLRSIST 819
             PP DFAEIL  LR IST
Sbjct: 408  QPPEDFAEILSWLRKIST 425