BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00017741
         (885 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006442418.1| hypothetical protein CICLE_v10023471mg, part...   199   9e-49
ref|XP_006432011.1| hypothetical protein CICLE_v10003098mg [Citr...   160   5e-37
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   158   3e-36
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    154   6e-35
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   152   2e-34
gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subc...   140   9e-31
gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subc...   139   1e-30
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc...   135   2e-29
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz...   134   4e-29
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi...   134   5e-29
gb|AFB73912.1| polyprotein [Citrus sinensis]                          132   1e-28
gb|AFB73911.1| polyprotein [Citrus sinensis]                          130   9e-28
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]   130   9e-28
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              128   3e-27
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              128   3e-27
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              128   3e-27
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]         127   4e-27
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              127   8e-27
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     126   1e-26
ref|XP_007028624.1| Uncharacterized protein TCM_024518 [Theobrom...   125   2e-26

>ref|XP_006442418.1| hypothetical protein CICLE_v10023471mg, partial [Citrus clementina]
           gi|557544680|gb|ESR55658.1| hypothetical protein
           CICLE_v10023471mg, partial [Citrus clementina]
          Length = 185

 Score =  199 bits (507), Expect = 9e-49
 Identities = 101/152 (66%), Positives = 123/152 (80%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W+++D RAAS I+L LAKNVLANV N+PTAK L EKLE LY TKSISNR YLKEQ++ L+
Sbjct: 33  WEELDDRAASAIRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISNRLYLKEQFHTLR 92

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
           M EGT I+DHLS LNGIVSELEAIG +I+D+D+ L+L+WSLP SYKH+ PTLMYGKE + 
Sbjct: 93  MAEGTKISDHLSVLNGIVSELEAIGVKIEDDDKALRLLWSLPTSYKHMLPTLMYGKEIVD 152

Query: 361 LGEVTTMLISEEKRLKGESNGSSENSALTVSG 456
           L EVT+ L+SEE+RL GES  + + S L V G
Sbjct: 153 LEEVTSTLLSEERRLSGESTETIDVSTLAVVG 184


>ref|XP_006432011.1| hypothetical protein CICLE_v10003098mg [Citrus clementina]
           gi|557534133|gb|ESR45251.1| hypothetical protein
           CICLE_v10003098mg [Citrus clementina]
          Length = 182

 Score =  160 bits (406), Expect = 5e-37
 Identities = 82/124 (66%), Positives = 98/124 (79%)
 Frame = +1

Query: 85  TAKGL*EKLESLYMTKSISNRFYLKEQYYHLQMDEGTSITDHLSALNGIVSELEAIGEQI 264
           T K L EKLE LY TKSISNR YLKE+++ L+M EGT I DHLS LNGIV ELEAIG +I
Sbjct: 58  TTKELWEKLEKLYRTKSISNRLYLKERFHTLRMTEGTKIFDHLSVLNGIVLELEAIGVKI 117

Query: 265 KDEDQVLKLIWSLPASYKHLKPTLMYGKETISLGEVTTMLISEEKRLKGESNGSSENSAL 444
           +D D+ L+L+WSLP SYKHL PTLMYGKET++L EVT  L+SEE+RL GES  +++ SAL
Sbjct: 118 EDGDKALRLLWSLPTSYKHLLPTLMYGKETVNLEEVTNTLLSEERRLSGESTETTDVSAL 177

Query: 445 TVSG 456
            V G
Sbjct: 178 AVVG 181


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score =  158 bits (399), Expect = 3e-36
 Identities = 98/298 (32%), Positives = 164/298 (55%), Gaps = 18/298 (6%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W D+D RAAS I+L+L+ +V+ N+++  TA+G+  +LESLYM+K+++N+ YLK+Q Y L 
Sbjct: 52  WADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALH 111

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
           M EGT+   HL+  NG++++L  +G +I++ED+ + L+ SLP+SY +L  T+++GK TI 
Sbjct: 112 MSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIE 171

Query: 361 LGEVTT-MLISEEKRLKGESNG--------------SSENSALTVSGKKSKKYIKA---T 486
           L +VT+ +L++E+ R K E+ G              SS N   + +  KSK   K+    
Sbjct: 172 LKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRN 231

Query: 487 CWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAGD 666
           C+ C Q GH KRDC                            N ++  ++ +  M  +G 
Sbjct: 232 CYNCNQPGHFKRDC-PNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGP 290

Query: 667 KNWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVKS 840
           ++     +WV+D+ A+ H    R  F +Y     G V  M + S   I G+G++ +K+
Sbjct: 291 ES-----EWVVDTAASHHATPVRDLFCRYVAGDFGTV-KMGNTSYSKIAGIGDICIKT 342


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  154 bits (388), Expect = 6e-35
 Identities = 97/298 (32%), Positives = 164/298 (55%), Gaps = 18/298 (6%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W+++D +AAS I+L+L  +V+ N+++  +A G+  KLE+LYM+K+++N+ YLK+Q Y L 
Sbjct: 53  WEELDEKAASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLH 112

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
           MDEGT+   HL+ LNG++++L  +G +I++ED+ + L+ SLP+SY  L  T+++GK++I 
Sbjct: 113 MDEGTNFLSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQ 172

Query: 361 LGEVTT-MLISEEKRLKGESNG--------------SSENSALTVSGKKSKKYIKA---T 486
           L +VT+ +L++E+ R K E++G              SS N   + +  KSK   K+    
Sbjct: 173 LKDVTSALLLNEKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKVRSKSKARN 232

Query: 487 CWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAGD 666
           C+ C Q GH KRDC                              L++  + +  M  AG 
Sbjct: 233 CYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEEC-MHLAGT 291

Query: 667 KNWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVKS 840
           ++     +WV+D+ A+ H    R  F +Y     G V  M + S   I G+G++  K+
Sbjct: 292 ES-----EWVVDTAASYHATPVRDLFCRYVAGDYGNV-KMGNTSYSKIAGIGDICFKT 343


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  152 bits (384), Expect = 2e-34
 Identities = 102/300 (34%), Positives = 159/300 (53%), Gaps = 16/300 (5%)
 Frame = +1

Query: 10  MDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQMDE 189
           ++ +A S I L LA +V+  V +  TA GL  KLESLYMTKS++N+  LK++ + L+M E
Sbjct: 52  LEEKAHSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAE 111

Query: 190 GTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETISLGE 369
           GT + +HL  LN ++ EL  I  +I+DED  L L+ SLP S+++   + + GK+T+SL E
Sbjct: 112 GTQLREHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEE 171

Query: 370 VTTMLISEEKRLKGESNGSS---ENSALTVS--------GKKSKKYIKA-----TCWECG 501
           V + L S E  L+ ++NG+S   + S L  S        GKK+K   K       C  C 
Sbjct: 172 VRSALHSRE--LRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCK 229

Query: 502 QQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAGDKNWNQ 681
           ++GH K DC                                  ++S+  +A   D++ + 
Sbjct: 230 EKGHWKFDCPKKKKQSEKQSVSAAVAEED--------------TNSEEDIALVADEHTHH 275

Query: 682 KRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVKSLDGRVVT 861
              WV+DSGA+ H+C  R WF  Y +  GG + SMA+ S+  ++G G +++++ DG   T
Sbjct: 276 SDVWVLDSGASYHICPRREWFTTYEQVDGGSI-SMANSSVCKVVGTGSIKIRTHDGSFCT 334


>gb|ABA96825.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 424

 Score =  140 bits (352), Expect = 9e-31
 Identities = 93/306 (30%), Positives = 152/306 (49%), Gaps = 20/306 (6%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W++M  +AA+ I+L+L+ +V+  VM+  T+K +  KL SLYM+KS++++ YLK+Q Y LQ
Sbjct: 53  WEEMKAQAAATIRLSLSDSVMYQVMDEKTSKEIWVKLTSLYMSKSLTSKLYLKQQLYGLQ 112

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
           M E + +  H+   N +V +L  +  ++ DED+ + L+ SLP SY+H+   L +GK+TI 
Sbjct: 113 MQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSYEHVVTILTHGKDTIK 172

Query: 361 LGEVTTMLISEEKR-LKGESNGSSENSALTV-------SGKKSKKYIKATCWECGQQGHL 516
              ++++L  + +R  K E+  +S+  +L V       +G    K   A C++C + GH+
Sbjct: 173 TEIISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGARCYKCHEFGHI 232

Query: 517 KRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAGD---------- 666
           +R+C                              L  R D    +A  GD          
Sbjct: 233 RRNCP----------------------------LLKKRKDGIASLAARGDDSDSSSHEIL 264

Query: 667 --KNWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVKS 840
              N      W++DS ++ HV   R WF  Y     G V    D S R ++GVG+V+ K 
Sbjct: 265 TVSNEKSGEAWMLDSASSYHVTSKREWFSSYKSGDFGVVYLGDDTSYR-VVGVGDVKFKM 323

Query: 841 LDGRVV 858
            DG  V
Sbjct: 324 YDGNEV 329


>gb|ABA98861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 425

 Score =  139 bits (351), Expect = 1e-30
 Identities = 93/307 (30%), Positives = 151/307 (49%), Gaps = 21/307 (6%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W++M  +AA+ I+L+L+ +V+  VM+  T K + +KL SLYM+KS++++ YLK+Q Y LQ
Sbjct: 53  WEEMKAQAAATIRLSLSDSVMYPVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQ 112

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
           M E + +  H+   N +V +L  +  ++ DED  + L+ SLP SY+H+  TLM+GK+T+ 
Sbjct: 113 MQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDMAIILLCSLPPSYEHVVTTLMHGKDTVK 172

Query: 361 LGEVTTMLISEEKRL--KGESNGSSENSALTV-------SGKKSKKYIKATCWECGQQGH 513
             E  + L++ + R   K E+  +S+  +L V       +G    K   A C++C + GH
Sbjct: 173 TEEKISSLLARDLRRSNKNEAMEASQAESLLVKAKHDHEAGVSKSKDKGARCYKCHEFGH 232

Query: 514 LKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAGD--------- 666
           ++R+C                              L  R      +A  GD         
Sbjct: 233 IRRNCP----------------------------LLKKRKGGIASLAARGDDSDSSSHET 264

Query: 667 ---KNWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVK 837
               N      W++DS ++ HV   R WF  Y     G V    D S R ++GVG+V+ +
Sbjct: 265 LTVSNEKSGEAWMLDSASSYHVTSKREWFSSYKSGDFGVVYLGDDTSYR-VVGVGDVKFE 323

Query: 838 SLDGRVV 858
             DG  V
Sbjct: 324 MYDGNEV 330


>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 415

 Score =  135 bits (340), Expect = 2e-29
 Identities = 86/305 (28%), Positives = 153/305 (50%), Gaps = 21/305 (6%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W +M  +AA+ I+L+L+ +V+  VM+  + K + +KL SL+M+KS++++ YLK+Q Y LQ
Sbjct: 53  WNEMKAQAAATIRLSLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQ 112

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
           + E + +  H+   N +V +L  +  ++ DED+ + L+ SLP SY+H+  TL +GK+T+ 
Sbjct: 113 VQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPLSYEHVVTTLTHGKDTVK 172

Query: 361 LGEVTTMLISEEKR--LKGESNGSSENSALTV-------SGKKSKKYIKATCWECGQQGH 513
             E+ + L++ + R   K E+  +S+  +L V       +G    K   A C++C + GH
Sbjct: 173 TEEIISSLLARDLRRSKKNEATKASQGKSLLVKDKHDHEAGVSKSKEKGARCYKCHEFGH 232

Query: 514 LKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAGDKNWNQKRD- 690
           ++R+C                              L  R      +A  GD + +   + 
Sbjct: 233 IRRNCP----------------------------LLKKRKGGIASLAARGDDSDSGSHEI 264

Query: 691 -----------WVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVK 837
                      W++DS ++ HV   R WF  Y     G V+ + DG+   ++GVG+V  K
Sbjct: 265 LTVSDEMSGEAWMLDSASSYHVTSKREWFSSYKSGDFG-VVYLGDGTSYRVVGVGDVNFK 323

Query: 838 SLDGR 852
             + R
Sbjct: 324 ICETR 328


>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
            Group] gi|108706491|gb|ABF94286.1| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 556

 Score =  134 bits (338), Expect = 4e-29
 Identities = 88/307 (28%), Positives = 151/307 (49%), Gaps = 21/307 (6%)
 Frame = +1

Query: 1    WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
            W +M  +A ++I+L+L+  V+  VM+  T K + +KL SLYM+KS++++ YLK+Q Y LQ
Sbjct: 184  WVEMKAQATAIIRLSLSDFVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQ 243

Query: 181  MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
            M E + +  H+   N +V +L  +  ++ DED+ + L+ SLP S++H+  TL +GK+T+ 
Sbjct: 244  MQEESDLRKHVDVFNQLVVDLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTLTHGKDTVK 303

Query: 361  LGEVTTMLISEEKR--LKGESNGSSENSALTV-------SGKKSKKYIKATCWECGQQGH 513
              E+ + L++ + R   K E+  +S+  +L V       +G    K   A C++C + GH
Sbjct: 304  TEEIISSLLARDLRRSKKNEAMEASQAESLLVKAKHDHEAGVSKSKEKGARCYKCHEFGH 363

Query: 514  LKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAGDKNWNQKRD- 690
            ++R+C                              L  R      +A  GD + +   + 
Sbjct: 364  IRRNCP----------------------------LLKKRKGGIASLAARGDNSDSSSHEI 395

Query: 691  -----------WVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVK 837
                       W++DS ++ HV     WF  Y     G V    D S R ++GVG+++ K
Sbjct: 396  LTVSNEKSGEAWMLDSASSYHVTSKWEWFSSYKSGDFGVVYLGNDTSYR-VIGVGDIKFK 454

Query: 838  SLDGRVV 858
              DG  V
Sbjct: 455  MYDGNEV 461


>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  134 bits (337), Expect = 5e-29
 Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 18/298 (6%)
 Frame = +1

Query: 19  RAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQMDEGTS 198
           +A S + L+L  +VL  V+   TA G+   L+ L+M KS+ NR YLK++ Y  +M +  +
Sbjct: 70  KARSTVILSLGNHVLRKVIKEKTAAGMIRVLDKLFMAKSLPNRIYLKQRLYGYKMSDSMT 129

Query: 199 ITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETISLGEVTT 378
           I ++++    ++S+LE +   + DEDQ + L+ SLP  +  LK TL YGK T++L E+T 
Sbjct: 130 IEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKTTLALDEITG 189

Query: 379 MLISEEKRL------------------KGESNGSSENSALTVSGKKSKKYIKATCWECGQ 504
            + S+   L                  +G S    ++S    S  +SK   K  CW CG+
Sbjct: 190 AIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERNKSQSRSKSREKKVCWVCGK 249

Query: 505 QGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAGDKNWNQK 684
           +GH K+ C                              L +R +S+         N    
Sbjct: 250 EGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVREESNA-------DNQEVD 302

Query: 685 RDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVKSLDGRVV 858
            +W++D+G + H+   R WF ++     G V  MA+ +   I G+G +++++ D   V
Sbjct: 303 NEWIMDTGCSFHMTPRRDWFVEFDESQTGRV-KMANQTYSEIKGIGSIRIQNDDNTTV 359


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  132 bits (333), Expect = 1e-28
 Identities = 94/310 (30%), Positives = 143/310 (46%), Gaps = 23/310 (7%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W ++D  A S + L LA  VL++V    TAK + + L  LY  KS+ N+ +LK + Y L+
Sbjct: 47  WNEVDSNAISDLHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLR 106

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
           M E T +TDH++ L  + S+L  +G  I++ ++   L+ SLP SY  L   L       S
Sbjct: 107 MAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVDS 166

Query: 361 L--GEVTTMLISEEKRLKGESN---GSSENSALTV------------------SGKKSKK 471
           L   +V   +++EE R K + N    S +  AL+V                  S  +SKK
Sbjct: 167 LVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKK 226

Query: 472 YIKATCWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPM 651
            +K  C+ CG++GH+K++C                              L     S+  +
Sbjct: 227 NVK--CYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEILY----SEATI 280

Query: 652 APAGDKNWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQ 831
              G K  +    W+IDSGAT H+   R WF  Y    GG V    D +L  I G+G ++
Sbjct: 281 VSEGRKRLSDV--WLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALE-IAGIGTIK 337

Query: 832 VKSLDGRVVT 861
           +K  DG + T
Sbjct: 338 IKMFDGTIRT 347


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  130 bits (326), Expect = 9e-28
 Identities = 93/313 (29%), Positives = 146/313 (46%), Gaps = 26/313 (8%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W ++D  A S + L LA  VL++V    TAK + + L  LY  KS+ N+ +LK + Y L+
Sbjct: 47  WNEVDGNAISDLHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLR 106

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGK--ET 354
           M E T +TDH++ L  + S+L  +G  I++ ++   L+ SLP SY  L   L      E+
Sbjct: 107 MAESTMVTDHINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVES 166

Query: 355 ISLGEVTTMLISEEKRLKGESN---GSSENSALTVSGKKS------------------KK 471
           +   +V   +++EE R K + N    S +  AL+V+  +S                  KK
Sbjct: 167 LVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKK 226

Query: 472 YIKATCWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPM 651
            +K  C+ CG++GH+K++C                                   D +I  
Sbjct: 227 NVK--CYNCGKKGHVKKECWSNQKRREGKEPETSNAQGCVAS---------TSDDGEILY 275

Query: 652 APAGDKNWNQKR---DWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVG 822
           + A   +  +KR    W+IDSGAT H+   R WF  Y    GG V    D +L  I G+G
Sbjct: 276 SEATTVSEGRKRLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALE-IAGIG 334

Query: 823 EVQVKSLDGRVVT 861
            +++K  DG + T
Sbjct: 335 TIKIKMFDGTIRT 347


>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
          Length = 950

 Score =  130 bits (326), Expect = 9e-28
 Identities = 99/304 (32%), Positives = 147/304 (48%), Gaps = 23/304 (7%)
 Frame = +1

Query: 19  RAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQMDEGTS 198
           RA S I L+LA  VL  V +  TA GL  K ES Y  KS++NR Y K Q + L+M EG  
Sbjct: 58  RAHSAILLSLADEVLREVADETTAVGLWRKFESKYQKKSLTNRLYQKRQLHTLKMSEGMQ 117

Query: 199 ITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETISLGEVTT 378
           + DHL+  N I+ +L  +G ++++EDQ + L+ SLP+SY++   T+MYG+++IS  +V  
Sbjct: 118 VRDHLNNFNRIILDLNGVGVKVEEEDQAMILLCSLPSSYENFVDTMMYGRBSISXNDVKD 177

Query: 379 MLISEE--KRLKGESNGSSENSALTVS---------GKKSKKYIKA----TCWECGQQGH 513
            L S+E  K + G   GS E + LTVS         G +SK   K+     C+   ++GH
Sbjct: 178 ALQSKELQKLVSGSEEGSVE-TGLTVSRGRSMERNGGGRSKSXSKSKAAMRCFHXKEKGH 236

Query: 514 LKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSD----IPMAPAGD----K 669
            +++C                              +V + DS+          GD     
Sbjct: 237 FRKNC-------------PQRQKGIGXGSNGNAQVVVAQKDSEKQDSSDEGEGGDVLTVS 283

Query: 670 NWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVKSLDG 849
             +    W++D+GA+ H+   R  F  +     G V    DG L  + G G VQ+K  DG
Sbjct: 284 TSSSAESWILDTGASYHMAYSRDLFTTFKE-WNGSVKLGDDGEL-GVKGSGSVQIKMYDG 341

Query: 850 RVVT 861
            V T
Sbjct: 342 LVRT 345


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  128 bits (322), Expect = 3e-27
 Identities = 91/309 (29%), Positives = 143/309 (46%), Gaps = 24/309 (7%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W++MD  A + + L +A +VL+++    TAK + + L  LY  KS+ NR +LK + Y LQ
Sbjct: 47  WKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQ 106

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGK--ET 354
           M E TS+TDH++ LN + S+L A   +I   ++   L+ SLP SY  L   +      +T
Sbjct: 107 MGESTSVTDHINTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADT 166

Query: 355 ISLGEVTTMLISEEKRLKGE---SNGSSENSALTVS----------------GKKSKKYI 477
           +   +V   ++ EE R K +   S  S +  ALT++                  KS++  
Sbjct: 167 LHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK 226

Query: 478 KATCWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAP 657
              C+ CG +GH+K++C                                   D +I  + 
Sbjct: 227 NIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVAS----------TSDDGEILYSE 276

Query: 658 AGDKNWNQKR---DWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEV 828
           A   +  ++R    W++DSGAT H+  HR WF  Y     G V    D +L  I GVG +
Sbjct: 277 AATSSKGERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALE-IAGVGTI 335

Query: 829 QVKSLDGRV 855
           ++K  DG V
Sbjct: 336 RLKMHDGTV 344


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  128 bits (321), Expect = 3e-27
 Identities = 90/309 (29%), Positives = 144/309 (46%), Gaps = 24/309 (7%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W++MD  A + + L +A +VL+++    TAK + + L  LY  KS+ NR +LK + Y L+
Sbjct: 47  WKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLR 106

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGK--ET 354
           M E TS+TDH++ LN + S+L A   +I + ++   L+ SLP SY  L   +      +T
Sbjct: 107 MGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDT 166

Query: 355 ISLGEVTTMLISEEKRLKGE---SNGSSENSALTVS----------------GKKSKKYI 477
           +   +V   ++ EE R K +   S  S +  ALT++                  KS++  
Sbjct: 167 LHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK 226

Query: 478 KATCWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAP 657
              C+ CG +GH+K++C                                   D +I  + 
Sbjct: 227 NIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVAS----------TSDDGEILYSE 276

Query: 658 AGDKNWNQKR---DWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEV 828
           A   +  ++R    W++DSGAT H+  HR WF  Y     G V    D +L  I GVG +
Sbjct: 277 AATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALE-IAGVGTI 335

Query: 829 QVKSLDGRV 855
           ++K  DG V
Sbjct: 336 RLKMHDGTV 344


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  128 bits (321), Expect = 3e-27
 Identities = 90/309 (29%), Positives = 144/309 (46%), Gaps = 24/309 (7%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W++MD  A + + L +A +VL+++    TAK + + L  LY  KS+ NR +LK + Y L+
Sbjct: 47  WKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLR 106

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGK--ET 354
           M E TS+TDH++ LN + S+L A   +I + ++   L+ SLP SY  L   +      +T
Sbjct: 107 MGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADT 166

Query: 355 ISLGEVTTMLISEEKRLKGE---SNGSSENSALTVS----------------GKKSKKYI 477
           +   +V   ++ EE R K +   S  S +  ALT++                  KS++  
Sbjct: 167 LHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKK 226

Query: 478 KATCWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAP 657
              C+ CG +GH+K++C                                   D +I  + 
Sbjct: 227 NIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVAS----------TSDDGEILYSE 276

Query: 658 AGDKNWNQKR---DWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEV 828
           A   +  ++R    W++DSGAT H+  HR WF  Y     G V    D +L  I GVG +
Sbjct: 277 AATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALE-IAGVGTI 335

Query: 829 QVKSLDGRV 855
           ++K  DG V
Sbjct: 336 RLKMHDGTV 344


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  127 bits (320), Expect = 4e-27
 Identities = 87/306 (28%), Positives = 140/306 (45%), Gaps = 19/306 (6%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           +++   +A S I L+++  VL  +    +A  + E L+ LYM+K++ NR YLK++ Y  +
Sbjct: 67  FEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFK 126

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMY--GKET 354
           M E  SI  ++     IV++LE +   + DEDQ + L+ SLP  +  LK TL Y  GK  
Sbjct: 127 MSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTV 186

Query: 355 ISLGEVTTMLISEE-------KRLKGESNG-----SSENSALTV-----SGKKSKKYIKA 483
           +SL EV   + S E       K +KG++ G      +EN   +       GK+SK   K 
Sbjct: 187 LSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKSKR 246

Query: 484 TCWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAG 663
            CW CG+ GHLK  C                            +   + S          
Sbjct: 247 GCWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVNFVESAGMFVSEALS 306

Query: 664 DKNWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVKSL 843
             + + + +W++D+G   H+   R W   +    GG V  M + S+  + GVG V++ + 
Sbjct: 307 STDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSV-RMGNKSISRVKGVGTVRIVND 365

Query: 844 DGRVVT 861
           +G  VT
Sbjct: 366 NGLTVT 371


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  127 bits (318), Expect = 8e-27
 Identities = 89/306 (29%), Positives = 142/306 (46%), Gaps = 21/306 (6%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W++MD  A + + L +A +VL+++    TAK + + L  LY  KS+ NR +LK + Y L+
Sbjct: 47  WKEMDDNAVANLHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLR 106

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGK--ET 354
           M E TS+TDH++ LN + S+L A   +I + ++   L+ SLP SY  L   +      +T
Sbjct: 107 MGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADT 166

Query: 355 ISLGEVTTMLISEEKRLKGE---SNGSSENSALTVS----------------GKKSKKYI 477
           +   +V   ++ EE R K +   S  S +  ALT++                  KS++  
Sbjct: 167 LHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKN 226

Query: 478 KATCWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAP 657
              C+ CG +GH+K++C                                    S+   + 
Sbjct: 227 NIKCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILY-----SEAATSS 281

Query: 658 AGDKNWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVK 837
            G++  N    W++DSGAT H+  HR WF  Y     G V    D +L  I GVG +++K
Sbjct: 282 EGERQLNDV--WIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALE-IAGVGTIRLK 338

Query: 838 SLDGRV 855
             DG V
Sbjct: 339 MHDGTV 344


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  126 bits (316), Expect = 1e-26
 Identities = 93/304 (30%), Positives = 139/304 (45%), Gaps = 19/304 (6%)
 Frame = +1

Query: 1   WQDMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQ 180
           W   + +  S I+L+LA NVL ++    TAK   E LES+Y  KSI N+  LKEQ + L+
Sbjct: 26  WTKKNKKTKSCIELHLADNVLLHIGETMTAKEAWENLESVYKGKSIGNKLLLKEQLFGLK 85

Query: 181 MDEGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETIS 360
           M+EG  + DH+      ++ LE +G ++ DED  + L+ SLP  +KH K T+++ KE I+
Sbjct: 86  MEEGDDLNDHICKFQNCIANLEKVGAKMDDEDTAVMLLHSLPPLFKHFKTTMIF-KELIT 144

Query: 361 LGEVT------TMLISEEKR-------LKGESNGSSENSALTVSGK---KSK---KYIKA 483
           L +V         L  EE         ++G+  G S N      G+   KSK   K  K 
Sbjct: 145 LSKVCENPKSYIRLEREEDSSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGKGKKD 204

Query: 484 TCWECGQQGHLKRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFLVLRSDSDIPMAPAG 663
            C+  G   H KR+C                            N ++  +D D  +    
Sbjct: 205 GCFIYGSPDHWKRNC----------KQWKEKKAQMSGESSQLANVVIGYNDEDGELLAIS 254

Query: 664 DKNWNQKRDWVIDSGATGHVCVHRAWFGKYARCMGGEVMSMADGSLRPILGVGEVQVKSL 843
             +    R W +D+  T H C HR WF  Y       V+ M + S   I+G+G V+++  
Sbjct: 255 TSS-GAPRHWTLDTACTFHTCAHRDWFDTYKEGNTRSVL-MGNDSPSRIMGIGMVKIRMH 312

Query: 844 DGRV 855
           DG V
Sbjct: 313 DGIV 316


>ref|XP_007028624.1| Uncharacterized protein TCM_024518 [Theobroma cacao]
           gi|508717229|gb|EOY09126.1| Uncharacterized protein
           TCM_024518 [Theobroma cacao]
          Length = 277

 Score =  125 bits (314), Expect = 2e-26
 Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 11/185 (5%)
 Frame = +1

Query: 7   DMDLRAASLIQLNLAKNVLANVMNVPTAKGL*EKLESLYMTKSISNRFYLKEQYYHLQMD 186
           D+  +A S I L L+  VL  V +  +A  +  KLES+Y+TKS++NR Y+K++ Y L+M 
Sbjct: 56  DLMEKAHSAILLTLSDEVLREVTDEESAAAMWFKLESIYITKSLTNRLYMKQRLYTLKMS 115

Query: 187 EGTSITDHLSALNGIVSELEAIGEQIKDEDQVLKLIWSLPASYKHLKPTLMYGKETISLG 366
           EGTS+  H+   N ++ +L+ I  +I+DED  L L+  LP SY++   T++YG++T++  
Sbjct: 116 EGTSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYENFVDTMLYGRDTLTFE 175

Query: 367 EVTTMLISEE-KRLKGESNGSSENSALTVS---------GKKSKKYIKA-TCWECGQQGH 513
           +V   L S+E K+  G     ++   L V+          KK K   K  TCW CGQ+GH
Sbjct: 176 DVRAYLNSKELKKKVGGIRNENQAEGLVVNRGRGKEKGLDKKGKSRAKGKTCWNCGQKGH 235

Query: 514 LKRDC 528
            ++DC
Sbjct: 236 FRQDC 240