BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00016698
         (789 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   346   5e-93
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              346   5e-93
ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mit...   343   5e-92
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   343   5e-92
ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phas...   343   5e-92
ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prun...   342   1e-91
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   341   2e-91
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   340   3e-91
ref|XP_006436405.1| hypothetical protein CICLE_v10031422mg [Citr...   340   3e-91
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   340   3e-91
ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutr...   338   1e-90
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   337   3e-90
dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]        335   9e-90
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   335   9e-90
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           335   1e-89
gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial...   334   2e-89
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           333   3e-89
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   333   3e-89
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   332   9e-89
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...   332   9e-89

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  346 bits (888), Expect = 5e-93
 Identities = 165/206 (80%), Positives = 187/206 (90%), Gaps = 3/206 (1%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           AT QRYWALVIGSPK+K+G+IHAPLSKVLL+DG+TER+I+A+ SG+EASQEAITEYRVLG
Sbjct: 274 ATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLG 333

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSWIEL P T RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMPRVD+EPT+G
Sbjct: 334 PMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTG 393

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPV---KHSTVATK 532
           KPYK+RRPEGLDVQKGSVLSKVPLLHLH RELILPNIAKFL +LD +P    ++  ++ K
Sbjct: 394 KPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQYPKLSLK 453

Query: 533 KDVLRFVAPMPSHMKISWNLMSSYLV 610
            D+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 454 PDILRFVASMPNHMKISWNLMSSYLV 479


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  346 bits (888), Expect = 5e-93
 Identities = 165/206 (80%), Positives = 187/206 (90%), Gaps = 3/206 (1%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           AT QRYWALVIGSPK+K+G+IHAPLSKVLL+DG+TER+I+A+ SG+EASQEAITEYRVLG
Sbjct: 276 ATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLEASQEAITEYRVLG 335

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSWIEL P T RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMPRVD+EPT+G
Sbjct: 336 PMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDLEPTTG 395

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPV---KHSTVATK 532
           KPYK+RRPEGLDVQKGSVLSKVPLLHLH RELILPNIAKFL +LD +P    ++  ++ K
Sbjct: 396 KPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPKPKNQNQYPKLSLK 455

Query: 533 KDVLRFVAPMPSHMKISWNLMSSYLV 610
            D+LRFVA MP+HMKISWNLMSSYLV
Sbjct: 456 PDILRFVASMPNHMKISWNLMSSYLV 481


>ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X2 [Glycine max]
          Length = 449

 Score =  343 bits (879), Expect = 5e-92
 Identities = 165/204 (80%), Positives = 183/204 (89%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           AT QRYWALVIG+PKEK+GIIHAPLSKVLLNDG+TERII+AH S VE  QEA+TEYRVLG
Sbjct: 246 ATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLG 305

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS+WKQMPRVDIEPT+G
Sbjct: 306 PQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTG 365

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATKKD 538
           KPYKLRRPEGLDVQKGSVLSKVPLLHLH REL+LPNI KF+ VL+    +  +++  + D
Sbjct: 366 KPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNSSEELRTSLREQPD 425

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           VLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 426 VLRFVATMPSHMRISWNLMSSYLV 449


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 476

 Score =  343 bits (879), Expect = 5e-92
 Identities = 165/204 (80%), Positives = 183/204 (89%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           AT QRYWALVIG+PKEK+GIIHAPLSKVLLNDG+TERII+AH S VE  QEA+TEYRVLG
Sbjct: 273 ATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLG 332

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS+WKQMPRVDIEPT+G
Sbjct: 333 PQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTG 392

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATKKD 538
           KPYKLRRPEGLDVQKGSVLSKVPLLHLH REL+LPNI KF+ VL+    +  +++  + D
Sbjct: 393 KPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNSSEELRTSLREQPD 452

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           VLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 453 VLRFVATMPSHMRISWNLMSSYLV 476


>ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
           gi|561034434|gb|ESW32964.1| hypothetical protein
           PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  343 bits (879), Expect = 5e-92
 Identities = 165/204 (80%), Positives = 185/204 (90%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           AT QRYWALVIG+PKEK+GIIHAPLSKVLLNDG+TERII+A+ S VE  QEA+TE+RVLG
Sbjct: 277 ATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILANHSSVEPRQEAVTEFRVLG 336

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS+WKQMPR+DIEPT+G
Sbjct: 337 PKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRIDIEPTTG 396

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATKKD 538
           KPYKLRRPEGLDVQKGSVLSKVPLLHLH REL+LPNIAKFL VL+    + HS++  + +
Sbjct: 397 KPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLNNSSEELHSSLNQQPE 456

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           VLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 457 VLRFVATMPSHMRISWNLMSSYLV 480


>ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
           gi|462405724|gb|EMJ11188.1| hypothetical protein
           PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  342 bits (876), Expect = 1e-91
 Identities = 164/204 (80%), Positives = 184/204 (90%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  QRYWALVIGSPKEK+G+I APLSKVLL++G+TER+I+AH SG+EASQ+AIT+YRVLG
Sbjct: 268 ARYQRYWALVIGSPKEKEGLICAPLSKVLLDNGKTERVILAHQSGLEASQKAITQYRVLG 327

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           PTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMP VD+EPTSG
Sbjct: 328 PTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPHVDVEPTSG 387

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDER-PVKHSTVATKKD 538
            PYKLRRP GLDVQKGSVLSKVPLLHLH REL+LPNIAKFL +LD++    H  V++K D
Sbjct: 388 LPYKLRRPAGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLLILDQKLDSLHPAVSSKPD 447

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           +LRFVA MPSHMKISWNLMSSYLV
Sbjct: 448 ILRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  341 bits (875), Expect = 2e-91
 Identities = 163/204 (79%), Positives = 184/204 (90%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           +T QRYWALVIG+PKEK+GIIHAPLSKVLLNDG+TER+I+AH S +E  QEA+TEYRVLG
Sbjct: 276 STYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERVILAHESSIEPHQEAVTEYRVLG 335

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VHS+WKQMPRVDIEPT+G
Sbjct: 336 PKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTG 395

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATKKD 538
           KPYKLRRPEGLDVQKGSVLSKVPLLHLH REL LPNIAKFL VL++   +   +++ + D
Sbjct: 396 KPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELALPNIAKFLNVLEKSSQQLDPSLSLQPD 455

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           VLRFVA MP+HM+ISWNLMSSYLV
Sbjct: 456 VLRFVATMPNHMRISWNLMSSYLV 479


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  340 bits (873), Expect = 3e-91
 Identities = 169/207 (81%), Positives = 185/207 (89%), Gaps = 4/207 (1%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  QRYWALVIGSPKEKQGIIHAPLSKVLL+DG+TERII+A  SG+EASQEA+TEYRVLG
Sbjct: 265 AMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAVTEYRVLG 324

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMPRVDIEPTSG
Sbjct: 325 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSG 384

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATK-- 532
           KPYKLRRP+GLDVQKGSVLSKVPLLHLH REL+LPNIAKF  VL+++      T+++K  
Sbjct: 385 KPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQKSDNLFPTLSSKPD 444

Query: 533 -KDVLRFVAPMPSHMKISWNLMSSYLV 610
             D+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 445 GPDLLRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_006436405.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538601|gb|ESR49645.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 343

 Score =  340 bits (873), Expect = 3e-91
 Identities = 169/207 (81%), Positives = 185/207 (89%), Gaps = 4/207 (1%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  QRYWALVIGSPKEKQGIIHAPLSKVLL+DG+TERII+A  SG+EASQEA+TEYRVLG
Sbjct: 137 AMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAVTEYRVLG 196

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMPRVDIEPTSG
Sbjct: 197 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSG 256

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATK-- 532
           KPYKLRRP+GLDVQKGSVLSKVPLLHLH REL+LPNIAKF  VL+++      T+++K  
Sbjct: 257 KPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQKSDNLFPTLSSKPD 316

Query: 533 -KDVLRFVAPMPSHMKISWNLMSSYLV 610
             D+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 317 GPDLLRFVASMPSHMKISWNLMSSYLV 343


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  340 bits (873), Expect = 3e-91
 Identities = 165/204 (80%), Positives = 180/204 (88%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           AT QRYWALVIGSPKEK+G+I APLSKVLLNDG+TER+++A  SG+EASQEA+TEYRVLG
Sbjct: 265 ATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGLEASQEALTEYRVLG 324

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW VH +WKQMPRVDIEP SG
Sbjct: 325 PRINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWCVHQRWKQMPRVDIEPFSG 384

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATKKD 538
           KPYKLRRP GLDVQKGSVLSKVPLLHLH RE +LPNIAKFL VL+E+    H  +  K D
Sbjct: 385 KPYKLRRPAGLDVQKGSVLSKVPLLHLHCREFVLPNIAKFLAVLNEKSENIHPALDAKPD 444

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           +LRFVA MP+HMKISWNLMSSYLV
Sbjct: 445 LLRFVASMPTHMKISWNLMSSYLV 468


>ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutrema salsugineum]
           gi|557086377|gb|ESQ27229.1| hypothetical protein
           EUTSA_v10018480mg [Eutrema salsugineum]
          Length = 478

 Score =  338 bits (867), Expect = 1e-90
 Identities = 159/205 (77%), Positives = 183/205 (89%), Gaps = 2/205 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  Q+YWALVIGSPK+K+G+I AP+SKVLL+DG+T+R+++A  SG EASQEAITEYRVLG
Sbjct: 274 AMYQQYWALVIGSPKDKEGVISAPISKVLLDDGKTDRVVLARGSGFEASQEAITEYRVLG 333

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH KWKQMP+VDIEPTSG
Sbjct: 334 PMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHKKWKQMPQVDIEPTSG 393

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK--HSTVATKK 535
           KPYKLRRPEGLD+QKGSVLSKVPLLHLH RE++LPNIAKFL VL+ + +   H  + +K 
Sbjct: 394 KPYKLRRPEGLDIQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNNQEIDSLHPGIISKP 453

Query: 536 DVLRFVAPMPSHMKISWNLMSSYLV 610
           D+LRFVA MPSHMKISWN+MSSYLV
Sbjct: 454 DLLRFVASMPSHMKISWNIMSSYLV 478


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  337 bits (864), Expect = 3e-90
 Identities = 167/207 (80%), Positives = 185/207 (89%), Gaps = 4/207 (1%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  QRYWALVIGSP+EKQGII APLSKVLL+DG+TERII+A  SG+EASQEA+TEYRVLG
Sbjct: 265 AMYQRYWALVIGSPREKQGIIRAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 324

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMPRVDIEPTSG
Sbjct: 325 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSG 384

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATK-- 532
           KPYKLRRP+GLDVQKGSVLSKVPLLHLH REL+LPNIAKF+ VL+++      T+++K  
Sbjct: 385 KPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFINVLNQKSDNLFPTLSSKPD 444

Query: 533 -KDVLRFVAPMPSHMKISWNLMSSYLV 610
             D+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 445 GPDLLRFVASMPSHMKISWNLMSSYLV 471


>dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]
          Length = 326

 Score =  335 bits (860), Expect = 9e-90
 Identities = 157/205 (76%), Positives = 184/205 (89%), Gaps = 2/205 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  Q+YWALVIGSPKEK+G+I APLSKVLL+DG+T+R+++A  SG EASQ+AITEY+VLG
Sbjct: 122 AMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLG 181

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL P+T RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMP+VDIEPT+G
Sbjct: 182 PKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTG 241

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK--HSTVATKK 535
           KPYKLRRPEGLDVQKGSVLSKVPLLHLH RE++LPNIAKFL V++++  +  H+ +  K 
Sbjct: 242 KPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGIIDKP 301

Query: 536 DVLRFVAPMPSHMKISWNLMSSYLV 610
           D+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 302 DLLRFVASMPSHMKISWNLMSSYLV 326


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudouridine synthase 3, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 3; AltName:
           Full=RNA-uridine isomerase 3; Flags: Precursor
           gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
           thaliana] gi|56790228|gb|AAW30031.1| At1g78910
           [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
           pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  335 bits (860), Expect = 9e-90
 Identities = 157/205 (76%), Positives = 184/205 (89%), Gaps = 2/205 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  Q+YWALVIGSPKEK+G+I APLSKVLL+DG+T+R+++A  SG EASQ+AITEY+VLG
Sbjct: 274 AMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLG 333

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL P+T RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMP+VDIEPT+G
Sbjct: 334 PKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTG 393

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK--HSTVATKK 535
           KPYKLRRPEGLDVQKGSVLSKVPLLHLH RE++LPNIAKFL V++++  +  H+ +  K 
Sbjct: 394 KPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGIIDKP 453

Query: 536 DVLRFVAPMPSHMKISWNLMSSYLV 610
           D+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 454 DLLRFVASMPSHMKISWNLMSSYLV 478


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  335 bits (859), Expect = 1e-89
 Identities = 161/204 (78%), Positives = 180/204 (88%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  Q+YWALVIGSPKEK+GII APLSKVLLNDG+TER+I+AH +G +ASQEAITEYRVLG
Sbjct: 246 AKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQASQEAITEYRVLG 305

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMP+V+IEPT+G
Sbjct: 306 PMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVNIEPTTG 365

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVKHS-TVATKKD 538
           KPYKLRRPEGLDVQKGSV+SKVPLLHL  REL+LPNIAKFL V D +       + +K D
Sbjct: 366 KPYKLRRPEGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLRVFDRKSQNQDPALESKPD 425

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           +LRFVA MPSHMKISWNLMSSYLV
Sbjct: 426 LLRFVARMPSHMKISWNLMSSYLV 449


>gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial [Mimulus
           guttatus]
          Length = 452

 Score =  334 bits (857), Expect = 2e-89
 Identities = 156/206 (75%), Positives = 181/206 (87%), Gaps = 3/206 (1%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  QRYWALVIG P +K+G+I APL+KVLLNDG+TE +I++H SG+EASQEAIT YRVLG
Sbjct: 247 AMYQRYWALVIGVPNQKEGVIFAPLTKVLLNDGKTEMVILSHNSGLEASQEAITRYRVLG 306

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSWIELHPLT RKHQLRVHCAEALGTPIVGDYKYGW+VHSKWKQMPR++ EPT+G
Sbjct: 307 PMINGCSWIELHPLTRRKHQLRVHCAEALGTPIVGDYKYGWFVHSKWKQMPRLNFEPTTG 366

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVKHST---VATK 532
           +PYK+RRPEGLDVQKGSVLSKVPLLHLH RE++LPNI KF+E+  ++P  ++    +  K
Sbjct: 367 EPYKMRRPEGLDVQKGSVLSKVPLLHLHSREMVLPNIEKFIELHKQKPGNYNVDPELCAK 426

Query: 533 KDVLRFVAPMPSHMKISWNLMSSYLV 610
            D+LRFVAPMP HMKISWNLMSSYLV
Sbjct: 427 PDILRFVAPMPKHMKISWNLMSSYLV 452


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  333 bits (855), Expect = 3e-89
 Identities = 161/204 (78%), Positives = 179/204 (87%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  Q+YWALVIGSPKEK+GII APLSKVLLNDG+TER+I+AH +G +ASQEAITEYRVLG
Sbjct: 246 AKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAHQTGFQASQEAITEYRVLG 305

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGW VH +WKQMP+V+IEPT+G
Sbjct: 306 PMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWLVHKRWKQMPQVNIEPTTG 365

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVKHS-TVATKKD 538
           KPYKLRRPEGLDVQKGSV+SKVPLLHL  REL+LPNIAKFL V D +       + +K D
Sbjct: 366 KPYKLRRPEGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLRVFDRKSENQDPALESKPD 425

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           +LRFVA MPSHMKISWNLMSSYLV
Sbjct: 426 LLRFVARMPSHMKISWNLMSSYLV 449


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  333 bits (855), Expect = 3e-89
 Identities = 155/203 (76%), Positives = 181/203 (89%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           +T QRYWALVIGSPKEK+G+I APL+KVLL+DG+TER+++A  SG+EAS EA+TEYR+LG
Sbjct: 273 STYQRYWALVIGSPKEKEGVISAPLTKVLLDDGRTERVMLAQQSGLEASDEAVTEYRLLG 332

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSWIEL P T RKHQ+RVHCAEALGTPIVGDYKYGW+VH KWKQMPRVD+EPT+G
Sbjct: 333 PMINGCSWIELRPHTSRKHQIRVHCAEALGTPIVGDYKYGWFVHRKWKQMPRVDVEPTTG 392

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVKHSTVATKKDV 541
           KPY+L+RPEGLDVQKGSVLSKVPLLHLH REL+LPNIAKF+E+   +  KHS  ++K D+
Sbjct: 393 KPYRLKRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFIELHSRKTKKHSDYSSKPDL 452

Query: 542 LRFVAPMPSHMKISWNLMSSYLV 610
           LRFVAPMPS MKISW LMSS L+
Sbjct: 453 LRFVAPMPSPMKISWKLMSSCLI 475


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  332 bits (851), Expect = 9e-89
 Identities = 157/204 (76%), Positives = 183/204 (89%), Gaps = 1/204 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           AT QRYWALVIGSPK+K+G+I A LSKVLL+DG+TER+++A  S +E S++A+TEYRVLG
Sbjct: 259 ATYQRYWALVIGSPKDKEGLISARLSKVLLDDGKTERVVLAQHSSLEPSRDAVTEYRVLG 318

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           PTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGW+VH +WKQMPRVDIEP+SG
Sbjct: 319 PTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPSSG 378

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK-HSTVATKKD 538
           KPYKLR PEG+D+QKGSVL+KVPLLHLH REL+LPNIAKFL+VLD +    H  ++T+ D
Sbjct: 379 KPYKLRWPEGVDIQKGSVLAKVPLLHLHCRELVLPNIAKFLDVLDGKSENVHPALSTRPD 438

Query: 539 VLRFVAPMPSHMKISWNLMSSYLV 610
           +LRFVA MPSHMKISWNLMSS+LV
Sbjct: 439 LLRFVASMPSHMKISWNLMSSFLV 462


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
           lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
           ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score =  332 bits (851), Expect = 9e-89
 Identities = 158/205 (77%), Positives = 182/205 (88%), Gaps = 2/205 (0%)
 Frame = +2

Query: 2   ATTQRYWALVIGSPKEKQGIIHAPLSKVLLNDGQTERIIIAHPSGVEASQEAITEYRVLG 181
           A  Q+YWALVIGSPKEK+G+I APLSKVLL+DG+T+R+++A  SG EASQEAITEYRVLG
Sbjct: 273 AMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQEAITEYRVLG 332

Query: 182 PTINGCSWIELHPLTGRKHQLRVHCAEALGTPIVGDYKYGWYVHSKWKQMPRVDIEPTSG 361
           P INGCSW+EL P+T RKHQLRVHCAEALGT IVGDYKYGW+VH +WKQMP+VDIEPT+G
Sbjct: 333 PMINGCSWLELRPITSRKHQLRVHCAEALGTSIVGDYKYGWFVHKRWKQMPQVDIEPTTG 392

Query: 362 KPYKLRRPEGLDVQKGSVLSKVPLLHLHHRELILPNIAKFLEVLDERPVK--HSTVATKK 535
           KPYKLRRPEGLDVQKGSVLSKVPLLHLH RE++LPNIAKFL VL+++  +   + +  K 
Sbjct: 393 KPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNQQETEPLRTGIIDKP 452

Query: 536 DVLRFVAPMPSHMKISWNLMSSYLV 610
           D+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 453 DLLRFVASMPSHMKISWNLMSSYLV 477