BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00015543
         (1040 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007211940.1| hypothetical protein PRUPE_ppa010773mg [Prun...   174   4e-41
ref|XP_007211941.1| hypothetical protein PRUPE_ppa010773mg [Prun...   172   2e-40
ref|XP_007147572.1| hypothetical protein PHAVU_006G135800g, part...   167   5e-39
ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II su...   167   5e-39
ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213...   167   5e-39
ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246...   162   2e-37
ref|XP_006467223.1| PREDICTED: DNA-directed RNA polymerases IV a...   162   3e-37
ref|XP_006449991.1| hypothetical protein CICLE_v10016499mg [Citr...   162   3e-37
ref|XP_007026413.1| DNA-directed RNA polymerase II subunit rpb4,...   161   5e-37
ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerases IV a...   160   1e-36
ref|XP_006373571.1| hypothetical protein POPTR_0016s00490g [Popu...   159   1e-36
ref|XP_002525033.1| conserved hypothetical protein [Ricinus comm...   158   3e-36
ref|XP_006350243.1| PREDICTED: DNA-directed RNA polymerases IV a...   157   7e-36
ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 ...   155   2e-35
ref|XP_006467222.1| PREDICTED: DNA-directed RNA polymerases IV a...   153   1e-34
ref|XP_006449990.1| hypothetical protein CICLE_v10016499mg [Citr...   153   1e-34
gb|EYU27635.1| hypothetical protein MIMGU_mgv1a013403mg [Mimulus...   151   5e-34
ref|XP_006597625.1| PREDICTED: DNA-directed RNA polymerases IV a...   150   6e-34
ref|XP_006398486.1| hypothetical protein EUTSA_v10001026mg [Eutr...   150   8e-34
gb|AFK45778.1| unknown [Medicago truncatula]                          149   2e-33

>ref|XP_007211940.1| hypothetical protein PRUPE_ppa010773mg [Prunus persica]
           gi|462407805|gb|EMJ13139.1| hypothetical protein
           PRUPE_ppa010773mg [Prunus persica]
          Length = 225

 Score =  174 bits (442), Expect = 4e-41
 Identities = 98/203 (48%), Positives = 132/203 (65%), Gaps = 2/203 (0%)
 Frame = -1

Query: 887 KNGSLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISGSLKSAGKVSFEDPVSKGGKAD 714
           K+ SLKGKD +  K  KG  ++FD  S+    P++N S    +    S +D   KGGK D
Sbjct: 28  KDASLKGKDDSSTKSKKGRKVQFD--SEGLHEPKSNFSSKFDNPAAASGKD-WGKGGKGD 84

Query: 713 QTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKL 534
           + G    K               +EL ++A CLMDCEAA+ILQGIQ+Q+++LS+D TIK+
Sbjct: 85  KVGNGRKKEPQPLELKIE-----QELPQSAKCLMDCEAADILQGIQEQMILLSKDPTIKI 139

Query: 533 PGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISS 354
           P SF+  L+YAK  SHYT+PQ+VR+VLETL  + VSD EI +I N+CPET DE+FAL+ S
Sbjct: 140 PVSFDKGLQYAKRTSHYTNPQSVRKVLETLTKYGVSDGEISVIANVCPETTDEVFALVPS 199

Query: 353 LKDNRFRIERAIKDVLSELAKLK 285
           LK  R  + + +K+VLSEL KLK
Sbjct: 200 LKTTRSVLSQPLKEVLSELTKLK 222


>ref|XP_007211941.1| hypothetical protein PRUPE_ppa010773mg [Prunus persica]
           gi|462407806|gb|EMJ13140.1| hypothetical protein
           PRUPE_ppa010773mg [Prunus persica]
          Length = 237

 Score =  172 bits (436), Expect = 2e-40
 Identities = 97/200 (48%), Positives = 130/200 (65%), Gaps = 2/200 (1%)
 Frame = -1

Query: 878 SLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISGSLKSAGKVSFEDPVSKGGKADQTG 705
           SLKGKD +  K  KG  ++FD  S+    P++N S    +    S +D   KGGK D+ G
Sbjct: 43  SLKGKDDSSTKSKKGRKVQFD--SEGLHEPKSNFSSKFDNPAAASGKD-WGKGGKGDKVG 99

Query: 704 KSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKLPGS 525
               K               +EL ++A CLMDCEAA+ILQGIQ+Q+++LS+D TIK+P S
Sbjct: 100 NGRKKEPQPLELKIE-----QELPQSAKCLMDCEAADILQGIQEQMILLSKDPTIKIPVS 154

Query: 524 FENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKD 345
           F+  L+YAK  SHYT+PQ+VR+VLETL  + VSD EI +I N+CPET DE+FAL+ SLK 
Sbjct: 155 FDKGLQYAKRTSHYTNPQSVRKVLETLTKYGVSDGEISVIANVCPETTDEVFALVPSLKT 214

Query: 344 NRFRIERAIKDVLSELAKLK 285
            R  + + +K+VLSEL KLK
Sbjct: 215 TRSVLSQPLKEVLSELTKLK 234


>ref|XP_007147572.1| hypothetical protein PHAVU_006G135800g, partial [Phaseolus
           vulgaris] gi|561020795|gb|ESW19566.1| hypothetical
           protein PHAVU_006G135800g, partial [Phaseolus vulgaris]
          Length = 242

 Score =  167 bits (424), Expect = 5e-39
 Identities = 99/224 (44%), Positives = 131/224 (58%), Gaps = 2/224 (0%)
 Frame = -1

Query: 950 MAEKGGKVXXXXXXXXXXXSEKNGSLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISG 777
           M+EKGGK                GS+KGKD +  K  KG  ++F      E    ++   
Sbjct: 32  MSEKGGKGGSLLSKGGL------GSMKGKDDSATKSAKGRRVQFSKDGPYESGISSSSHS 85

Query: 776 SLKSAGKVSFEDPVSKGGKADQTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAA 597
           SLKS GK         GGK D+   +GGKSS             ++L +N  CLMDCEAA
Sbjct: 86  SLKSGGK---------GGKGDKVA-NGGKSSQSKDSQSSEQRVDQKLPENIKCLMDCEAA 135

Query: 596 EILQGIQDQLVVLSEDSTIKLPGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEE 417
           ++LQGIQDQ+++LS DS IK+P  FE  L+YAK  S YT+ Q+VR VLE L ++ ++D E
Sbjct: 136 DVLQGIQDQMIMLSRDSNIKMPTPFEKGLQYAKNNSKYTNAQSVRHVLEPLANNGLTDSE 195

Query: 416 ICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAKLK 285
           IC+IGN+CPET DE+FAL+  LK  R      ++D LSELAKL+
Sbjct: 196 ICVIGNVCPETIDEVFALLPPLKGKRNVQREVLEDSLSELAKLR 239


>ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
           [Cucumis sativus]
          Length = 220

 Score =  167 bits (424), Expect = 5e-39
 Identities = 97/206 (47%), Positives = 132/206 (64%), Gaps = 4/206 (1%)
 Frame = -1

Query: 887 KNGSLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISGSLKSAGKVSFEDPVSKGGKAD 714
           K+ SLKGKD +  K  KG  ++FD    ++GS  A  + S+K +GK      + KGGK  
Sbjct: 26  KDASLKGKDDSLSKLKKGRKVQFD----AQGSVDATNTFSMKYSGK---NGDLGKGGKGA 78

Query: 713 QTGKSGGKSSTXXXXXXXXXXXKEELSKNAVC--LMDCEAAEILQGIQDQLVVLSEDSTI 540
            T     K+S            ++EL KN  C  LMDCEAA++LQGIQDQ+V LS D TI
Sbjct: 79  NT-----KASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTI 133

Query: 539 KLPGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALI 360
           K+P SF+  L+YAK  +HY + ++VR VLETL+ + V+D EIC+I N+CP+T DE+FAL+
Sbjct: 134 KIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALL 193

Query: 359 SSLKDNRFRIERAIKDVLSELAKLKS 282
            SLK  R ++   I +VLSELAK+KS
Sbjct: 194 PSLKRKRSKLSEPINNVLSELAKVKS 219


>ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
          Length = 242

 Score =  167 bits (424), Expect = 5e-39
 Identities = 97/206 (47%), Positives = 132/206 (64%), Gaps = 4/206 (1%)
 Frame = -1

Query: 887 KNGSLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISGSLKSAGKVSFEDPVSKGGKAD 714
           K+ SLKGKD +  K  KG  ++FD    ++GS  A  + S+K +GK      + KGGK  
Sbjct: 26  KDASLKGKDDSLSKLKKGRKVQFD----AQGSVDATNTFSMKYSGK---NGDLGKGGKGA 78

Query: 713 QTGKSGGKSSTXXXXXXXXXXXKEELSKNAVC--LMDCEAAEILQGIQDQLVVLSEDSTI 540
            T     K+S            ++EL KN  C  LMDCEAA++LQGIQDQ+V LS D TI
Sbjct: 79  NT-----KASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTI 133

Query: 539 KLPGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALI 360
           K+P SF+  L+YAK  +HY + ++VR VLETL+ + V+D EIC+I N+CP+T DE+FAL+
Sbjct: 134 KIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALL 193

Query: 359 SSLKDNRFRIERAIKDVLSELAKLKS 282
            SLK  R ++   I +VLSELAK+KS
Sbjct: 194 PSLKRKRSKLSEPINNVLSELAKVKS 219


>ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
           vinifera] gi|359495604|ref|XP_003635035.1| PREDICTED:
           uncharacterized protein LOC100246461 isoform 2 [Vitis
           vinifera] gi|297736694|emb|CBI25730.3| unnamed protein
           product [Vitis vinifera]
          Length = 239

 Score =  162 bits (410), Expect = 2e-37
 Identities = 101/229 (44%), Positives = 134/229 (58%), Gaps = 7/229 (3%)
 Frame = -1

Query: 950 MAEKGGKVXXXXXXXXXXXSEK--NGSLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANI 783
           M EKGGK            ++     SL GKD +  K  +G  ++F++     G P A +
Sbjct: 1   MGEKGGKGFSLNSNLGKSSTKSPLEASLTGKDDSAAKSKRGRKVQFNNG----GLPEARL 56

Query: 782 SGSLKSAGKVSF---EDPVSKGGKADQTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLM 612
           + SL S GK      +  +SKGGK  +   +G KS+            ++EL KNA C+M
Sbjct: 57  TSSLMSGGKTDIPIAKGDLSKGGKGGRV-LNGEKSAVPKPPAPLELRIEQELPKNAKCMM 115

Query: 611 DCEAAEILQGIQDQLVVLSEDSTIKLPGSFENALRYAKLGSHYTSPQAVRQVLETLRSHK 432
           DCEAA IL+GIQ+Q+VVLSED TIK+P SF   L+YA+  + Y SPQ+VR VLE L  + 
Sbjct: 116 DCEAALILKGIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYASPQSVRLVLEPLSKYG 175

Query: 431 VSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAKLK 285
           VSD EIC+I N CPET DE+FAL+ SLK     +   +KDVL  LA+LK
Sbjct: 176 VSDGEICVIANTCPETIDEVFALVPSLKPKWSTLREPLKDVLRGLAELK 224


>ref|XP_006467223.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X2 [Citrus sinensis]
          Length = 225

 Score =  162 bits (409), Expect = 3e-37
 Identities = 93/204 (45%), Positives = 127/204 (62%), Gaps = 5/204 (2%)
 Frame = -1

Query: 878 SLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISGSLKSAGKVSF---EDPVSKGGKAD 714
           SL GKD N  K  +G  ++F+    SEG      + S KS GK      +  ++KGGK D
Sbjct: 26  SLGGKDDNSAKSKRGRKVQFNTEGLSEGK----FTFSSKSDGKFETTYGKGGLTKGGKGD 81

Query: 713 QTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKL 534
           +   +G K S            ++EL KNA CLMDCEAA IL+GIQ+Q+ +LS D TIK+
Sbjct: 82  KVA-NGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKI 140

Query: 533 PGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISS 354
           P SF+  L YAK  SH+T+PQAV+ + ++L  H V+D EIC+I NICPET +E +A++ S
Sbjct: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200

Query: 353 LKDNRFRIERAIKDVLSELAKLKS 282
           LK  R R+   +K+VL +LAK KS
Sbjct: 201 LKAKRSRLNDLLKEVLIQLAKFKS 224


>ref|XP_006449991.1| hypothetical protein CICLE_v10016499mg [Citrus clementina]
           gi|557552602|gb|ESR63231.1| hypothetical protein
           CICLE_v10016499mg [Citrus clementina]
          Length = 225

 Score =  162 bits (409), Expect = 3e-37
 Identities = 93/204 (45%), Positives = 127/204 (62%), Gaps = 5/204 (2%)
 Frame = -1

Query: 878 SLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISGSLKSAGKVSF---EDPVSKGGKAD 714
           SL GKD N  K  +G  ++F+    SEG      + S KS GK      +  ++KGGK D
Sbjct: 26  SLGGKDDNSAKSKRGRKVQFNTEGLSEGK----FTFSSKSDGKFETTCGKGGLTKGGKGD 81

Query: 713 QTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKL 534
           +   +G K S            ++EL KNA CLMDCEAA IL+GIQ+Q+ +LS D TIK+
Sbjct: 82  KVA-NGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKI 140

Query: 533 PGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISS 354
           P SF+  L YAK  SH+T+PQAV+ + ++L  H V+D EIC+I NICPET +E +A++ S
Sbjct: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200

Query: 353 LKDNRFRIERAIKDVLSELAKLKS 282
           LK  R R+   +K+VL +LAK KS
Sbjct: 201 LKAKRSRLNDLLKEVLIQLAKFKS 224


>ref|XP_007026413.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 1
           [Theobroma cacao] gi|590627315|ref|XP_007026414.1|
           DNA-directed RNA polymerase II subunit rpb4, putative
           isoform 1 [Theobroma cacao] gi|508781779|gb|EOY29035.1|
           DNA-directed RNA polymerase II subunit rpb4, putative
           isoform 1 [Theobroma cacao] gi|508781780|gb|EOY29036.1|
           DNA-directed RNA polymerase II subunit rpb4, putative
           isoform 1 [Theobroma cacao]
          Length = 231

 Score =  161 bits (407), Expect = 5e-37
 Identities = 104/235 (44%), Positives = 137/235 (58%), Gaps = 13/235 (5%)
 Frame = -1

Query: 950 MAEKGGKVXXXXXXXXXXXSEKNGSLK-----GKDGNFPK--KGNVIEFDDSSDSEGSPR 792
           M+EKGGK            + K+         GKD N  K  +G  ++F      EG P 
Sbjct: 1   MSEKGGKGFSLPTKTTPKSALKSTPASATARHGKDDNSAKSKRGRKVQFG----MEGLPN 56

Query: 791 ANIS-GSLKSAGKVSFEDPV-----SKGGKADQTGKSGGKSSTXXXXXXXXXXXKEELSK 630
              +  S KS GK  F  PV     +KGGK ++   +GGK+             ++EL +
Sbjct: 57  LGFNFSSPKSDGK--FAIPVGKGDWAKGGKGEKV-VNGGKAPVAKEAKSLELRVEQELPE 113

Query: 629 NAVCLMDCEAAEILQGIQDQLVVLSEDSTIKLPGSFENALRYAKLGSHYTSPQAVRQVLE 450
           N  CLMDCEAA IL+GIQ+Q+V+LS+DSTIKLP SF   L+YAK  S+YT+PQ+VR+VLE
Sbjct: 114 NVKCLMDCEAANILEGIQEQMVMLSQDSTIKLPESFHLGLQYAKTRSYYTNPQSVRRVLE 173

Query: 449 TLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAKLK 285
            L  + VS  EIC+I N CPET DE+FAL+ SL+  + R+   +KDVL EL KLK
Sbjct: 174 ALSKYGVSYSEICVIANTCPETVDEVFALVRSLEAKKSRLSEPLKDVLDELGKLK 228


>ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Glycine max]
          Length = 211

 Score =  160 bits (404), Expect = 1e-36
 Identities = 93/202 (46%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
 Frame = -1

Query: 881 GSLKGKDGNFPK--KGNVIEFD-DSSDSEGSPRANISGSLKSAGKVSFEDPVSKGGKADQ 711
           GSLKGKD    K  KG  ++F  D    E    +N + SLKS GK    D V+KGGK  Q
Sbjct: 17  GSLKGKDDIATKSAKGRRVQFSTDGPLFESGVSSNSATSLKSGGKGGMGDNVAKGGKNSQ 76

Query: 710 TGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKLP 531
           +  S                  ++L +N  CLMDCEA +ILQGIQ+++V+LS DST+K+P
Sbjct: 77  SKDSHPSD----------YRVDQKLPENIKCLMDCEAVDILQGIQERMVMLSRDSTVKMP 126

Query: 530 GSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSL 351
            SF+  L+YAK  S Y   Q++R +L+ L    V+D EIC+IGN+CPET DE+FAL+ SL
Sbjct: 127 ISFDKGLQYAKSNSKYLDLQSIRHILDRLAKCGVTDSEICVIGNVCPETIDEVFALLPSL 186

Query: 350 KDNRFRIERAIKDVLSELAKLK 285
           KD R    + +KD LSELAK +
Sbjct: 187 KDRRNIDSQVLKDSLSELAKFR 208


>ref|XP_006373571.1| hypothetical protein POPTR_0016s00490g [Populus trichocarpa]
           gi|550320481|gb|ERP51368.1| hypothetical protein
           POPTR_0016s00490g [Populus trichocarpa]
          Length = 197

 Score =  159 bits (403), Expect = 1e-36
 Identities = 98/204 (48%), Positives = 125/204 (61%), Gaps = 2/204 (0%)
 Frame = -1

Query: 890 EKNGSLKGKDGNFPKKGNVIEFDDSSDSEGSPRANISGSLKSAGKVSFEDP--VSKGGKA 717
           EK G   GK  + P K        SS ++G   +N      +  K+ FE    +SKGGK 
Sbjct: 2   EKGG---GKGFSLPSKEPKSSLKSSS-TKGKDDSN------NGRKIHFESEGNLSKGGKG 51

Query: 716 DQTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIK 537
            +   +GGKS             + EL +NA  LMDCEAA+ILQGIQDQ+V+LS+D TIK
Sbjct: 52  GKIA-NGGKSPMTKEPPPLELKIESELPQNAKPLMDCEAAQILQGIQDQMVLLSQDPTIK 110

Query: 536 LPGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALIS 357
           LP SF+  L+YAK G+HYT+PQ+VR+VLE LR + VSD EI LI N+ PETADE FAL+ 
Sbjct: 111 LPVSFDKGLQYAKNGAHYTNPQSVRRVLEALRKYGVSDGEISLIANVFPETADEAFALVP 170

Query: 356 SLKDNRFRIERAIKDVLSELAKLK 285
           SLK     +   +KD+L ELAK K
Sbjct: 171 SLKSKASTLREPLKDILGELAKFK 194


>ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
           gi|223535695|gb|EEF37360.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 203

 Score =  158 bits (400), Expect = 3e-36
 Identities = 84/197 (42%), Positives = 124/197 (62%), Gaps = 2/197 (1%)
 Frame = -1

Query: 869 GKDGNFPKKGNVIEFDDSSDSEGSPRANISGSLKSAGKVSFEDP--VSKGGKADQTGKSG 696
           GK  + P KG        + +    + + S   K   KV F     +SKGGK D+   +G
Sbjct: 5   GKGFSLPGKGLKSSLKSITPASTKGKDDTSAKSKRGKKVQFNSQGNMSKGGKGDKVS-NG 63

Query: 695 GKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKLPGSFEN 516
            K S+           +++L KNA CLMDCEAA++LQGIQ+Q+V+LS D TIKLP SF+ 
Sbjct: 64  VKISSTKEPQPLELKIEQDLPKNAKCLMDCEAAQVLQGIQEQMVLLSRDPTIKLPVSFDR 123

Query: 515 ALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRF 336
           AL++A+ G+ +T+PQ+VR++LE L+ H VS+ EIC I N+CP+  DE+FAL+ SLK  + 
Sbjct: 124 ALQHARTGARFTNPQSVRRILEGLKKHGVSEGEICTIANVCPDGVDEVFALVPSLKSKKN 183

Query: 335 RIERAIKDVLSELAKLK 285
            +   +KD+L +L++LK
Sbjct: 184 VLREPLKDILGQLSELK 200


>ref|XP_006350243.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Solanum tuberosum]
          Length = 220

 Score =  157 bits (397), Expect = 7e-36
 Identities = 95/224 (42%), Positives = 133/224 (59%), Gaps = 2/224 (0%)
 Frame = -1

Query: 950 MAEKGGKVXXXXXXXXXXXSEKNGSLKGKDGNF--PKKGNVIEFDDSSDSEGSPRANISG 777
           MAEKGGK              K+ + KGKD +    K+G  ++FD    SEGS   N + 
Sbjct: 1   MAEKGGKGFSLPKSGKSAL--KSPASKGKDDSSVKSKRGRKVQFD----SEGSLDTNSTK 54

Query: 776 SLKSAGKVSFEDPVSKGGKADQTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAA 597
           S   A   S +  + K GK ++ G S GKS             ++EL  N+ CLMDCEAA
Sbjct: 55  SNGKADIPSLKGDLGKAGKGEKAG-SAGKSQKAKAPDPLELRVEQELPANSTCLMDCEAA 113

Query: 596 EILQGIQDQLVVLSEDSTIKLPGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEE 417
           +ILQGIQ+ +VVLS+D  IKLP SF+  L YA+    Y +PQAV+Q+LE L+ H VSD E
Sbjct: 114 DILQGIQENMVVLSDDPAIKLPVSFDRGLAYAQRNRLYDNPQAVKQILEPLKQHGVSDGE 173

Query: 416 ICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAKLK 285
           +C+I N   E+ DE+FAL+ S K+ + ++   +++VL+ELAKL+
Sbjct: 174 LCMIANFPLESVDEVFALVPSFKNKKSKLRVPLENVLAELAKLR 217


>ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
           gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4
           [Medicago truncatula] gi|355483391|gb|AES64594.1|
           DNA-directed RNA polymerase II subunit rpb4 [Medicago
           truncatula]
          Length = 223

 Score =  155 bits (393), Expect = 2e-35
 Identities = 98/237 (41%), Positives = 133/237 (56%), Gaps = 4/237 (1%)
 Frame = -1

Query: 983 GGPSRLEVGATMAEKGGKVXXXXXXXXXXXSEKNGSLKGKDGNFPK--KGNVIEFDDSSD 810
           GGP ++    TM++KGGK              K G LKGKD +  K  K   ++F     
Sbjct: 14  GGPKQV---LTMSDKGGK--------GGSLLSKGGGLKGKDDSATKSAKARKVQF----- 57

Query: 809 SEGSPRANISGSLKSAGKVSFEDPVSKGGKADQTGKSGGKSSTXXXXXXXXXXXKEELSK 630
           SEG   +  +G              + GGK D+   +GGKSS             +EL +
Sbjct: 58  SEGLFESRSNGP-------------TSGGKGDKVA-NGGKSSAAKDPHQFEHRVDQELPE 103

Query: 629 NAVCLMDCEAAEILQGIQDQLVVLSEDSTIKLPGSFENALRYAKLGSH--YTSPQAVRQV 456
           N  CLMDCEAA +LQGIQDQ+V LS D +IK+P SF+  L YAK  S   Y++P++VR  
Sbjct: 104 NFKCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRHT 163

Query: 455 LETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAKLK 285
           LE L +H +++ EIC+I N+CPETADE+FAL+ SLK  R    + +++ LSELAK K
Sbjct: 164 LEPLMNHDLTESEICVIANVCPETADEVFALLPSLKSKRGINSQPVEEALSELAKFK 220


>ref|XP_006467222.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X1 [Citrus sinensis]
          Length = 237

 Score =  153 bits (386), Expect = 1e-34
 Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 17/216 (7%)
 Frame = -1

Query: 878 SLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISGSLKSAGKVSF---EDPVSKGGKAD 714
           SL GKD N  K  +G  ++F+    SEG      + S KS GK      +  ++KGGK D
Sbjct: 26  SLGGKDDNSAKSKRGRKVQFNTEGLSEGK----FTFSSKSDGKFETTYGKGGLTKGGKGD 81

Query: 713 QTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKL 534
           +   +G K S            ++EL KNA CLMDCEAA IL+GIQ+Q+ +LS D TIK+
Sbjct: 82  KVA-NGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKI 140

Query: 533 PGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISS 354
           P SF+  L YAK  SH+T+PQAV+ + ++L  H V+D EIC+I NICPET +E +A++ S
Sbjct: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200

Query: 353 LK------------DNRFRIERAIKDVLSELAKLKS 282
           LK              R R+   +K+VL +LAK KS
Sbjct: 201 LKRMVDERICELFQAKRSRLNDLLKEVLIQLAKFKS 236


>ref|XP_006449990.1| hypothetical protein CICLE_v10016499mg [Citrus clementina]
           gi|557552601|gb|ESR63230.1| hypothetical protein
           CICLE_v10016499mg [Citrus clementina]
          Length = 237

 Score =  153 bits (386), Expect = 1e-34
 Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 17/216 (7%)
 Frame = -1

Query: 878 SLKGKDGNFPK--KGNVIEFDDSSDSEGSPRANISGSLKSAGKVSF---EDPVSKGGKAD 714
           SL GKD N  K  +G  ++F+    SEG      + S KS GK      +  ++KGGK D
Sbjct: 26  SLGGKDDNSAKSKRGRKVQFNTEGLSEGK----FTFSSKSDGKFETTCGKGGLTKGGKGD 81

Query: 713 QTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKL 534
           +   +G K S            ++EL KNA CLMDCEAA IL+GIQ+Q+ +LS D TIK+
Sbjct: 82  KVA-NGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAHILEGIQEQMALLSADPTIKI 140

Query: 533 PGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISS 354
           P SF+  L YAK  SH+T+PQAV+ + ++L  H V+D EIC+I NICPET +E +A++ S
Sbjct: 141 PVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPS 200

Query: 353 LK------------DNRFRIERAIKDVLSELAKLKS 282
           LK              R R+   +K+VL +LAK KS
Sbjct: 201 LKRMVDERICELFQAKRSRLNDLLKEVLIQLAKFKS 236


>gb|EYU27635.1| hypothetical protein MIMGU_mgv1a013403mg [Mimulus guttatus]
          Length = 221

 Score =  151 bits (381), Expect = 5e-34
 Identities = 96/227 (42%), Positives = 125/227 (55%), Gaps = 5/227 (2%)
 Frame = -1

Query: 950 MAEKGGKVXXXXXXXXXXXSEKNG--SLKG--KDGNFPKKGNVIEFDDSSDSEGS-PRAN 786
           MAEKGGK              K G  +LK    +G+  KKG  ++FD     E   P++N
Sbjct: 1   MAEKGGK---------GYVPPKGGKSALKSPVSNGDKSKKGKAVQFDSEDSFESDIPKSN 51

Query: 785 ISGSLKSAGKVSFEDPVSKGGKADQTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDC 606
                  AGK        KGGK ++   +G K  T            + L  N+VCLMDC
Sbjct: 52  GEKGSAPAGKGG------KGGKGEKVA-NGTKKPTAKAPSSTEKTLVDGLPPNSVCLMDC 104

Query: 605 EAAEILQGIQDQLVVLSEDSTIKLPGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVS 426
           EAAEILQGIQDQ+VVLS+D  IKLP SF+  L YAK G +   PQ V+++ E L+ H VS
Sbjct: 105 EAAEILQGIQDQMVVLSQDPDIKLPVSFDMGLSYAKRGGNLAKPQTVKKIFEPLKKHGVS 164

Query: 425 DEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAKLK 285
           + EICLI N+ PET DE+FAL+ +LK     ++  ++  L ELA LK
Sbjct: 165 ESEICLISNVGPETVDEVFALVPALKPKMSTLKGPLRIALDELAILK 211


>ref|XP_006597625.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X1 [Glycine max]
           gi|571518018|ref|XP_006597626.1| PREDICTED: DNA-directed
           RNA polymerases IV and V subunit 4-like isoform X2
           [Glycine max]
          Length = 211

 Score =  150 bits (380), Expect = 6e-34
 Identities = 86/199 (43%), Positives = 117/199 (58%)
 Frame = -1

Query: 881 GSLKGKDGNFPKKGNVIEFDDSSDSEGSPRANISGSLKSAGKVSFEDPVSKGGKADQTGK 702
           GS KGKD +  K         SSD         S SL S      +    KGGK D    
Sbjct: 17  GSQKGKDDSATKSAKKRMVQFSSDGPSFESGVSSSSLPS------QKSGGKGGKGDNVA- 69

Query: 701 SGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKLPGSF 522
           +GGKSS             ++L +N  CL+DCEA +ILQGIQ+++V+LS DSTIK+P SF
Sbjct: 70  NGGKSSQSKDSHSSDHRVDQKLPENIKCLIDCEAVDILQGIQERMVMLSRDSTIKMPISF 129

Query: 521 ENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDN 342
           +  L+YAK  + YT   ++R++L+ L    ++D EIC+IGN+CPET DE+FAL+ SLKD 
Sbjct: 130 DKGLQYAKSSTKYTDLHSIRRILDPLAKCGLTDSEICVIGNVCPETIDEVFALLPSLKDK 189

Query: 341 RFRIERAIKDVLSELAKLK 285
           R    + +KD LS+LAK +
Sbjct: 190 RNIDRQVLKDSLSQLAKFR 208


>ref|XP_006398486.1| hypothetical protein EUTSA_v10001026mg [Eutrema salsugineum]
           gi|557099575|gb|ESQ39939.1| hypothetical protein
           EUTSA_v10001026mg [Eutrema salsugineum]
          Length = 208

 Score =  150 bits (379), Expect = 8e-34
 Identities = 85/222 (38%), Positives = 127/222 (57%)
 Frame = -1

Query: 950 MAEKGGKVXXXXXXXXXXXSEKNGSLKGKDGNFPKKGNVIEFDDSSDSEGSPRANISGSL 771
           M+EKGGK              K GS K  +    KK   ++FD    S+   +      +
Sbjct: 1   MSEKGGK----GIKSSLKSPSKYGSGKDDNSTKSKKTRKVQFDPLGTSDSKYK------I 50

Query: 770 KSAGKVSFEDPVSKGGKADQTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEI 591
                  F+   +KGGK    G +  K +            ++EL +NA CLMDCEA +I
Sbjct: 51  VQDSDYQFQGSSAKGGK----GTNAKKITRSKESQPLELKTEKELPENAKCLMDCEAFQI 106

Query: 590 LQGIQDQLVVLSEDSTIKLPGSFENALRYAKLGSHYTSPQAVRQVLETLRSHKVSDEEIC 411
           L+GI++QL VLS+D +IK+P SF   L Y KLGS YT+PQ+ RQ+LE L+ H VS+ E+C
Sbjct: 107 LEGIKEQLAVLSDDPSIKIPVSFNRGLEYLKLGSCYTNPQSARQILEPLKKHGVSEGELC 166

Query: 410 LIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAKLK 285
           +I N+CPE+ DE+FA + S+K  + +I + +++ L++L+KLK
Sbjct: 167 MIANVCPESIDEVFAFVPSMKGKKDKISQPLEEALTKLSKLK 208


>gb|AFK45778.1| unknown [Medicago truncatula]
          Length = 201

 Score =  149 bits (375), Expect = 2e-33
 Identities = 87/205 (42%), Positives = 118/205 (57%), Gaps = 10/205 (4%)
 Frame = -1

Query: 869 GKDGNFPKKGNVIEFDDSSDSEGSPRANISGSLKSAGKVSFEDPV--------SKGGKAD 714
           GK G+   KG +   DDS+      R           KV F + +        + GGK D
Sbjct: 6   GKGGSLLSKGGLKGKDDSATKSAKAR-----------KVQFSEGLFESRSNGPTSGGKGD 54

Query: 713 QTGKSGGKSSTXXXXXXXXXXXKEELSKNAVCLMDCEAAEILQGIQDQLVVLSEDSTIKL 534
           +   +GGKSS             +EL +N  CLMDCEAA +LQGIQDQ+V LS D +IK+
Sbjct: 55  KVA-NGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGIQDQMVALSRDPSIKM 113

Query: 533 PGSFENALRYAKLGSH--YTSPQAVRQVLETLRSHKVSDEEICLIGNICPETADELFALI 360
           P SF+  L YAK  S   Y++P++VR  LE L +H +++ EIC+I N+CPETADE+FAL+
Sbjct: 114 PASFDKGLYYAKSSSSSKYSNPESVRHTLEPLMNHDLTESEICVIANVCPETADEVFALL 173

Query: 359 SSLKDNRFRIERAIKDVLSELAKLK 285
            SLK  R    + +++ LSELAK K
Sbjct: 174 PSLKSKRGINSQPVEEALSELAKFK 198