BLASTX nr result
ID: Cocculus23_contig00015376
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00015376
(1003 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 209 3e-55
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 204 1e-54
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 208 2e-54
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 203 1e-53
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 203 1e-53
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 197 4e-52
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 203 1e-51
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 202 2e-51
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 192 5e-50
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 192 9e-50
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 190 1e-49
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 199 1e-48
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 187 2e-48
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 187 2e-47
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 194 5e-47
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 193 1e-46
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 173 2e-46
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 191 4e-46
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 191 4e-46
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 176 9e-46
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 209 bits (532), Expect(2) = 3e-55
Identities = 109/263 (41%), Positives = 167/263 (63%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
I LIPK ++ T +D++ I+ N LYK I R+L +RL+ + ++ QS F+ GRS+ +
Sbjct: 508 IVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAE 567
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA DL HG++ + P +LKVDL+KA+DS+ W F++ L+ + P+ FI+ I QCI
Sbjct: 568 NVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCI 627
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+P+F+V +N GFFKS+KGLR GDP+S YLF L +E FS L+ +
Sbjct: 628 STPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKA 687
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
+L ISH++F +D++I +L+ E ++ F+S + L+ N+ K ++ AGLN E
Sbjct: 688 SNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLN-QLE 746
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
S ++ GF +G LPI+YLGLPL
Sbjct: 747 SNANAAYGFPIGTLPIRYLGLPL 769
Score = 34.3 bits (77), Expect(2) = 3e-55
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 813 QPSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
+P LE + ARF+S K LS+ GR L+ VI +W+ F P C
Sbjct: 780 EPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGC 828
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 204 bits (518), Expect(2) = 1e-54
Identities = 105/265 (39%), Positives = 171/265 (64%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ LIPK +A+S +D++ I+ N +YK I+++L +RLK + + +QS F+ GR ++
Sbjct: 405 LVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLE 464
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA +L HG+++ + P+ +LKVDLRKA+DS+ W FI+ L+ + P+ F I +C+
Sbjct: 465 NVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECL 524
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+ SFSV++N AG F SSKGLR GDP+S YLF L +EVFS L++ +
Sbjct: 525 STASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKT 584
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
L+ISH++F +D++I +L+ +E +E F+ + L N +K +++ AGL+ +
Sbjct: 585 SQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSES 644
Query: 725 SFLSSLSGFEVGQLPIKYLGLPLDS 799
++S GF++G LP++YLGLPL S
Sbjct: 645 DSMASY-GFKLGSLPVRYLGLPLMS 668
Score = 37.7 bits (86), Expect(2) = 1e-54
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
P +E + ARF S + LS+ GR L+ VI + +W+ F PL C
Sbjct: 678 PLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGC 725
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 208 bits (529), Expect(2) = 2e-54
Identities = 105/263 (39%), Positives = 166/263 (63%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ALIPK +++ DY+ I+ CNV+YK I+++LANRLK+ + + NQS F+K R +++
Sbjct: 67 LALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIE 126
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA DL +H+ +K+D+ KA DS+ W F++ L M FP++FI I CI
Sbjct: 127 NVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCI 186
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
++PSFSV VN AGFF+SS+GLR G +S YLF + ++V S L+ K+V ++ C
Sbjct: 187 TTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHC 246
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
+ + ++H+ F +D++I+ ++ +E + FS + L+ + K IF AGL+
Sbjct: 247 KRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSR 306
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
+ L + FEVG+LPI+YLGLPL
Sbjct: 307 AQLHTHFPFEVGELPIRYLGLPL 329
Score = 32.3 bits (72), Expect(2) = 2e-54
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*CF*E 968
P +E + R S ++FLS+ GR L+ +I S +W+ F P C E
Sbjct: 341 PLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQE 391
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 203 bits (517), Expect(2) = 1e-53
Identities = 101/263 (38%), Positives = 170/263 (64%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ LIPK +A + ++++ I+ N LYK I+++L +RL+ + ++ +QS F+ GRS+ +
Sbjct: 368 LVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAE 427
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA ++ HG++R++ P +LKVDL+KA+DS+ W F+ L+ + P+ +I+ I+QCI
Sbjct: 428 NVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCI 487
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
++PSF++ VN + GFF+S+KGLR GDP+S YLF L +EVFS L+ +
Sbjct: 488 TTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKA 547
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
L ISH++F +D++I +++ E ++ F+ + L+ N+ K ++F AGL++ E
Sbjct: 548 GDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDL-SE 606
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
S+ GF G PI+YLGLPL
Sbjct: 607 RITSAAYGFPAGTFPIRYLGLPL 629
Score = 34.7 bits (78), Expect(2) = 1e-53
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
P LE + AR +S +K LS+ GR+ L+ VI L +W+ F P C
Sbjct: 641 PLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGC 688
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 203 bits (517), Expect(2) = 1e-53
Identities = 101/263 (38%), Positives = 170/263 (64%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ LIPK +A + ++++ I+ N LYK I+++L +RL+ + ++ +QS F+ GRS+ +
Sbjct: 368 LVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAE 427
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA ++ HG++R++ P +LKVDL+KA+DS+ W F+ L+ + P+ +I+ I+QCI
Sbjct: 428 NVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCI 487
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
++PSF++ VN + GFF+S+KGLR GDP+S YLF L +EVFS L+ +
Sbjct: 488 TTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKA 547
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
L ISH++F +D++I +++ E ++ F+ + L+ N+ K ++F AGL++ E
Sbjct: 548 GDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDL-SE 606
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
S+ GF G PI+YLGLPL
Sbjct: 607 RITSAAYGFPAGTFPIRYLGLPL 629
Score = 34.7 bits (78), Expect(2) = 1e-53
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
P LE + AR +S +K LS+ GR+ L+ VI L +W+ F P C
Sbjct: 641 PLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGC 688
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 197 bits (501), Expect(2) = 4e-52
Identities = 98/263 (37%), Positives = 162/263 (61%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ALI K + + DY+ I+ CNVLYK +++++ANRLK + + PNQS FIK R +++
Sbjct: 661 LALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMME 720
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA +L +H+ LK+D+ KA+D + W F++ VLK + P++FI I CI
Sbjct: 721 NLLLASELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCI 780
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
+ SFSV VN +GFF+S +GLR G +S YL+ + + V S ++ K +KK+ C
Sbjct: 781 GTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRC 840
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
R++ ++H+ F +D+++ T ++ L E F++ + L+ + K IF AG++ + +
Sbjct: 841 RNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAK 900
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
+ + FE+G LP+KYLGLPL
Sbjct: 901 TSILQQFPFELGTLPVKYLGLPL 923
Score = 35.4 bits (80), Expect(2) = 4e-52
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*CF*E 968
P +E + AR S +FLS+ GR L++ V+ S+ +W+ F P C E
Sbjct: 935 PLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQE 985
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 203 bits (516), Expect(2) = 1e-51
Identities = 105/265 (39%), Positives = 167/265 (63%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ LIPK +++ D++ I+ N LYK I ++L +RLK + ++ P+QS F+ GR + +
Sbjct: 509 LVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSE 568
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA ++ HG++ + +LKVDLRKA+DS+ W FI+ + + P+ F+ I QCI
Sbjct: 569 NVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCI 628
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+P FSV+VN S +GFFKS+KGLR GDP+S YLF L +EVFS+L++ ++
Sbjct: 629 STPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKT 688
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
L ISH++F +D+++ +L+ E ++ F+S + L N+ K ++ AG + + E
Sbjct: 689 ADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTD-EVE 747
Query: 725 SFLSSLSGFEVGQLPIKYLGLPLDS 799
+ S GF + LPI+YLGLPL S
Sbjct: 748 ALAISHYGFPISTLPIRYLGLPLMS 772
Score = 28.1 bits (61), Expect(2) = 1e-51
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 840 RFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
RF+S K LS+ GR L+ VI L +W+ F L C
Sbjct: 785 RFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGC 824
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 202 bits (514), Expect(2) = 2e-51
Identities = 105/265 (39%), Positives = 166/265 (62%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ LIPK +++ D++ I+ N LYK I ++L +RLK + ++ P+QS F+ GR + +
Sbjct: 509 LVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSE 568
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA ++ HG++ + +LKVDLRKA+DS+ W FI+ + + P+ F+ I QCI
Sbjct: 569 NVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCI 628
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+P FSV+VN S +GFFKS+KGLR GDP+S YLF L +EVFS+L++ +
Sbjct: 629 STPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKT 688
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
L ISH++F +D+++ +L+ E ++ F+S + L N+ K ++ AG + + E
Sbjct: 689 ADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTD-EVE 747
Query: 725 SFLSSLSGFEVGQLPIKYLGLPLDS 799
+ S GF + LPI+YLGLPL S
Sbjct: 748 ALAISHYGFPISTLPIRYLGLPLMS 772
Score = 28.1 bits (61), Expect(2) = 2e-51
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 840 RFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
RF+S K LS+ GR L+ VI L +W+ F L C
Sbjct: 785 RFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGC 824
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 192 bits (489), Expect(2) = 5e-50
Identities = 97/263 (36%), Positives = 159/263 (60%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ALIPK M+A DY+ I+ CNVLYK I++++ANRLK + + NQS FIK R +++
Sbjct: 32 LALIPKKMEAKEIKDYRPISCCNVLYKVISKIIANRLKRVLPQFIAGNQSAFIKDRLLIE 91
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA +L +H+ +K+D+ KA+DS+ W F+ VL + FPQ F+ I C+
Sbjct: 92 NLLLATELVKDYHKDSVSERCAIKIDISKAFDSVQWSFLRNVLLTLDFPQEFVHWIMLCV 151
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
++ SFSV VNR AG+F S +GLR G ++ YLF +V++V S + + +K C
Sbjct: 152 TTASFSVQVNRELAGYFNSLRGLRQGCSLTPYLFVIVMDVLSKKLDRAAGLRKFGYHPKC 211
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
++L ++H+ F +D++++ +L +E ++F+ + L+ + K I+FAG++
Sbjct: 212 KNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGISKSVC 271
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
F VG+LP++YL LPL
Sbjct: 272 KEFEDQFHFAVGRLPVRYLCLPL 294
Score = 33.1 bits (74), Expect(2) = 5e-50
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
P LE ++ R + +FLS+ GR LV V+ S+ +W+ F P C
Sbjct: 306 PLLEQIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPREC 353
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 192 bits (487), Expect(2) = 9e-50
Identities = 103/264 (39%), Positives = 159/264 (60%), Gaps = 1/264 (0%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ ++PK +A +++ I+ CN +YK I+++LA RL+ + + P+QS F+KGR + +
Sbjct: 507 VTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTE 566
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA +L GF + + VLKVDLRKA+DS+ WGFI+E LK P F++ I QCI
Sbjct: 567 NVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCI 626
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
+S SFS+ V+ S G+FK SKGLR GDP+S LF + +E+ S L+ +D +
Sbjct: 627 TSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKA 686
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGL-NVDQ 721
++IS + F +D++I +L +E+F + + LE N K ++ AGL + D+
Sbjct: 687 SEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDK 746
Query: 722 ESFLSSLSGFEVGQLPIKYLGLPL 793
E L+ GF G P +YLGLPL
Sbjct: 747 EDTLA--FGFVNGTFPFRYLGLPL 768
Score = 33.1 bits (74), Expect(2) = 9e-50
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 822 LEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
++ + ARF TK LS+ GR L+ VI S +W+ F P C
Sbjct: 782 IDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCC 827
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 190 bits (482), Expect(2) = 1e-49
Identities = 93/263 (35%), Positives = 160/263 (60%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ALIPK +A DY+ I+ CNVLYK I++++ANRLK+ + + NQS F+K R +++
Sbjct: 514 LALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIE 573
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA +L +H+ +K+D+ KA+DS+ W F++ V + FP+ FI I CI
Sbjct: 574 NLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICI 633
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
++ SFSV VN AG+F+SS+GLR G +S YLF + ++V S ++ K A + C
Sbjct: 634 TTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKC 693
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
+++ ++H+ F +D++++ ++ ++ + F+ + L + K ++ AGL+
Sbjct: 694 KTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATAR 753
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
+ ++ F GQLP++YLGLPL
Sbjct: 754 NEVADRFPFSSGQLPVRYLGLPL 776
Score = 34.7 bits (78), Expect(2) = 1e-49
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*CF*E 968
P LE V R S ++FLS+ GR L+ V+ S+ +W+ F P C E
Sbjct: 788 PLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRE 838
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 199 bits (506), Expect = 1e-48
Identities = 110/263 (41%), Positives = 163/263 (61%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
I LIPK +A+ +D++ I+ N LYK I R+L +RL+ + ++ P+QS F+ GR + +
Sbjct: 486 IVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRLQKLLSCVISPSQSAFLPGRLLAE 545
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA ++ HG++ + +LKVDLRKA+DS+ W FI+ L + P FI+ I+QCI
Sbjct: 546 NVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFIIAALLALGVPTKFINWIHQCI 605
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+P+F+V VN GFFKS+KGLR GDP+S YLF L +EVFS L+ +
Sbjct: 606 STPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLAMEVFSKLLNSRFDSGYIRYHPKA 665
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
L ISH++F +D++I +L+ E +E F+S + L+ N K F AGL +
Sbjct: 666 SDLSISHLMFADDVMIFFDGGSSSLHGICETLEDFASWSGLKVNNDKSHFFCAGLEQAER 725
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
+ L++ GF G LPI+YLGLPL
Sbjct: 726 NSLAAY-GFPQGCLPIRYLGLPL 747
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 187 bits (476), Expect(2) = 2e-48
Identities = 94/263 (35%), Positives = 155/263 (58%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ALIPK +A DY+ I+ CNVLYK I+++LANRLK+ + + NQS F+K R +++
Sbjct: 811 LALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLME 870
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA +L +H+ P +K+D+ KA+DS+ W F++ L+ + FP+ F I CI
Sbjct: 871 NVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCI 930
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+ +FSV VN AGFF SS+GLR G +S YLF + + V S ++ + + + C
Sbjct: 931 STATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKC 990
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
+ ++H+ F +D+++ + ++ + + F+ + L+ + K I+ AG++
Sbjct: 991 EKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDR 1050
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
S F GQLP++YLGLPL
Sbjct: 1051 VQTLSSFPFANGQLPVRYLGLPL 1073
Score = 33.1 bits (74), Expect(2) = 2e-48
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*CF*E 968
P +EAV+ + S + LS+ GR L+ VI S+ +W+ + P C E
Sbjct: 1085 PLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIRE 1135
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 187 bits (475), Expect(2) = 2e-47
Identities = 94/265 (35%), Positives = 160/265 (60%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ALIPK +A DY+ I+ CNVLYK I++++ANRLK+ + + NQS F+K R +++
Sbjct: 402 LALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIE 461
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA ++ +H+ LK+D+ KA+DS+ W F++ VL+ M FP F I CI
Sbjct: 462 NVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCI 521
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
++ SFSV VN AG F S++ LR G +S YLF + ++V S ++ K V ++ C
Sbjct: 522 TTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKC 581
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
R++ ++H+ F +D++I+ +++ ++ + F+ + L+ + K ++ AG+
Sbjct: 582 RAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVY 641
Query: 725 SFLSSLSGFEVGQLPIKYLGLPLDS 799
+ F+VG+LP++YLGLPL S
Sbjct: 642 QEIVQKFSFDVGKLPVRYLGLPLVS 666
Score = 30.0 bits (66), Expect(2) = 2e-47
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*CF*E 968
P +E + + ++ ++FLS+ GR L+ + S+ +W+ F P C E
Sbjct: 676 PLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIRE 726
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 194 bits (493), Expect = 5e-47
Identities = 101/265 (38%), Positives = 156/265 (58%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ L+PK AT +++ IA C V+YK I+++L NR+K + +V QS FI GR I D
Sbjct: 499 VTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIAD 558
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
NILLA +L G+ R P ++KVD+RKAYDS+ W F+ +L FP F+ I +C+
Sbjct: 559 NILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECV 618
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+ S+SVLVN P F++ KGLR GDP+S +LF L +E S + ++ C
Sbjct: 619 STVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKC 678
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
L I+H++F +D+L+ RA +L++ + FS + L A+ K I+F G++ +
Sbjct: 679 ERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETA 738
Query: 725 SFLSSLSGFEVGQLPIKYLGLPLDS 799
L+ ++G+LP +YLG+PL S
Sbjct: 739 RELADYVHMQLGELPFRYLGVPLTS 763
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 193 bits (490), Expect = 1e-46
Identities = 97/263 (36%), Positives = 160/263 (60%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ALIPK +A DY+ I+ CNVLYK I+++LANRLK + + NQS F+K R +++
Sbjct: 235 LALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIE 294
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA +L +H+ +K+D+ KA+DSL W F+ VL M FP FI I C+
Sbjct: 295 NVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCM 354
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+ SFS+ VN AG+F+S++GLR G +S YLF + ++V S ++ K ++ C
Sbjct: 355 STASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRC 414
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
++L ++H+ F +D++I+ +++ ++ + F++ L+ K ++ AG++
Sbjct: 415 KTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSR 474
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
+SS F VG+LP++YLGLPL
Sbjct: 475 QLMSSRYSFGVGKLPVRYLGLPL 497
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 173 bits (439), Expect(2) = 2e-46
Identities = 94/263 (35%), Positives = 151/263 (57%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ALIPK A DY+ I+ CNVLYK I+++LANRLK + + PNQS FI R +++
Sbjct: 780 LALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLME 839
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
N+LLA +L +H+ P +K+DL KA+DS+ W F++ L + P+ FI I CI
Sbjct: 840 NLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCI 899
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
S+ SFSV VN GLR G +S YLF + + V SA++ K +K+ C
Sbjct: 900 STASFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRC 948
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
R++ ++H+ F +D+++ + +L L + F++ + L + K +F A ++ +
Sbjct: 949 RNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETC 1008
Query: 725 SFLSSLSGFEVGQLPIKYLGLPL 793
+ + + F+ G LP++YLGLPL
Sbjct: 1009 ASILARFPFDSGSLPVRYLGLPL 1031
Score = 40.4 bits (93), Expect(2) = 2e-46
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*CF*E 968
P LE + +R S K +FLS+ GR L+ VI SL +W+ F P C E
Sbjct: 1043 PLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIRE 1093
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 191 bits (485), Expect = 4e-46
Identities = 101/264 (38%), Positives = 150/264 (56%), Gaps = 1/264 (0%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
I L+PK + T+ +D++ I+ CN YK I ++LANRLK + +V P+QS FI GR I D
Sbjct: 335 ITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGD 394
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
NILLAQ++ +H+ D P VD+ KA D++ W FI+ L+ P I I CI
Sbjct: 395 NILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCI 454
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFS-ALMRKMVADKKLELLSS 541
SS FSV VN AGFF +GLR GDP+S YLF + +EV S + R++
Sbjct: 455 SSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWR 514
Query: 542 CRSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQ 721
C L +SH+ F +D+L+ ++ + F S + L+AN + KIF AG++ +
Sbjct: 515 CDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNS 574
Query: 722 ESFLSSLSGFEVGQLPIKYLGLPL 793
+ ++ F +G P++YLG+PL
Sbjct: 575 SDSVLQVTNFSLGTCPVRYLGIPL 598
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 191 bits (485), Expect = 4e-46
Identities = 101/265 (38%), Positives = 157/265 (59%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCNVLYKFITRVLANRLKIAVEYLVCPNQSVFIKGRSIVD 184
+ LIPK +A DY+ IA C+ LYK I+++L RL+ + +V Q+ FI R I D
Sbjct: 502 VTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGD 561
Query: 185 NILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID*IYQCI 364
NILLA +L G++R P V+KVD+RKAYDS+ W F+ +LK + FP +FI I C+
Sbjct: 562 NILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACV 621
Query: 365 SSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLELLSSC 544
+ S+S+L+N P+ F + KGLR GDP+S +LF L +E S M M D + C
Sbjct: 622 KTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKC 681
Query: 545 RSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGLNVDQE 724
+K++H++F +D+L+ RA +++ + +FS + L+A+ K I+F G+ ++
Sbjct: 682 ERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEA 741
Query: 725 SFLSSLSGFEVGQLPIKYLGLPLDS 799
L+ +G LP +YLG+PL S
Sbjct: 742 EQLADRIQMPIGSLPFRYLGVPLAS 766
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 176 bits (447), Expect(2) = 9e-46
Identities = 100/260 (38%), Positives = 154/260 (59%), Gaps = 6/260 (2%)
Frame = +2
Query: 5 IALIPKGMDATSFADYQLIALCN-----VLYKFITRVLANRLKIAVEYLVCPNQSVFIKG 169
+ LIPK +A+ D++ I+ CN LYK I R+L NRL+ + ++ P QS F+ G
Sbjct: 457 LVLIPKITNASKMNDFRPIS-CNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPG 515
Query: 170 RSIVDNILLAQDLFHGFHRIDHVPTMVLKVDLRKAYDSLSWGFIMEVLKRMQFPQVFID* 349
R + +N+LLA +L G++R + P +LKVDLRKA+DS+ W FI+ LK + P F+
Sbjct: 516 RFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYW 575
Query: 350 IYQCISSPSFSVLVNRSPAGFFKSSKGLRLGDPISTYLFTLVIEVFSALMRKMVADKKLE 529
I QCIS+P+FSV VN + GFFKS++GLR G+P+S +LF L +EVFS+L+ +
Sbjct: 576 ITQCISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIH 635
Query: 530 LLSSCRSLKISHVLFTNDMLIVLRAT*LNLNNFLEGMEAFSSCTVLEANRHKLKIFFAGL 709
L ISH++F +D+++ +L+ E +E F+ + L NR K ++ AGL
Sbjct: 636 YHPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGL 695
Query: 710 N-VDQESFLSSLSGFEVGQL 766
+ ++ + L E G L
Sbjct: 696 DRIEASTIARKLRIAEYGPL 715
Score = 35.0 bits (79), Expect(2) = 9e-46
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 816 PSLEAVEARFQS*KTKFLSWVGRSILVRLVIQSLYIYWVGGFCHPL*C 959
P LE + RF+S K LS+ GR L+ VI + +W+ F P C
Sbjct: 714 PLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGC 761