BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00015077
         (1491 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     511   e-142
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    510   e-142
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   509   e-141
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     509   e-141
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    508   e-141
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   506   e-141
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...   505   e-140
gb|AHO49120.1| RNA-dependent RNA polymerase 6 [Carica papaya]         504   e-140
gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]   503   e-140
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   503   e-139
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   496   e-139
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   501   e-139
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   500   e-139
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   500   e-139
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   490   e-139
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...   490   e-139
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   497   e-138
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   496   e-138
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun...   490   e-137
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   495   e-137

>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  511 bits (1317), Expect = e-142
 Identities = 247/385 (64%), Positives = 301/385 (78%), Gaps = 4/385 (1%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS+PSLEN F KHGP+FS+  +N++V+KG VVIAKNPCLHPGD+RILEAVD PGL HL
Sbjct: 783  IQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPH+NEASGSDLDGDLYFVTWDE LIPPSK+SW+PM Y+P E K++  +
Sbjct: 843  YDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMGRQ 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII+FF+++M++  LG ICNAHVVH+D SE GA+DEKC+KLAELAA+AVDFPKTGK
Sbjct: 903  VNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASD--GEIPYDMDLKVPKLS 776
            + TMP  LKPK+YPDFMGK +FQSYKS KILGKLYR+VKD  D  GE+   ++L      
Sbjct: 963  LVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLEL------ 1016

Query: 775  TPQDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--Y 602
             P DIPYD  LE+PGS  FI DAWNSKCSYD QL  LLGQYKVN E EVV+GHIWS   Y
Sbjct: 1017 VPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY 1076

Query: 601  TNNKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHP 422
            +  K G +KE+L +AY+ L+KEF+  F  +  DF+   D +KN +YE+KASAWYQVTY+P
Sbjct: 1077 SAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNP 1136

Query: 421  RWVKKSLETKALILASR*ILLPITW 347
             WV +SLE +     S  ++L   W
Sbjct: 1137 HWVARSLELQLPDAVSSTVMLSFAW 1161


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  510 bits (1313), Expect = e-142
 Identities = 247/383 (64%), Positives = 298/383 (77%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS+PSLEN F KHGP+FS+  +N++V+KG VVIAKNPCLHPGD+RILEAVD P L HL
Sbjct: 783  IQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPH+NEASGSDLDGDLYFVTWDE LIPPSK+SW+PM Y+P E K+L  +
Sbjct: 843  YDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQ 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII+FF+++M++  LG ICNAHVVH+D SE GA+DEKC+KLAELAA+AVDFPKTGK
Sbjct: 903  VNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP  LKPK+YPDFMGK +FQSYKS KILGKLYR+VKD  D E      L+V     P
Sbjct: 963  LVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEV----VP 1018

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
            +DIPYD  LE+ GS  FI DAWNSKCSYD QL  LLGQYKVN E EVV+GHIWS   Y+ 
Sbjct: 1019 KDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSA 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L +AY+ L+KEF+  F  +  DF+   D +KN +YE+KASAWYQVTYHP W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138

Query: 415  VKKSLETKALILASR*ILLPITW 347
            V +SLE +     S  ++L   W
Sbjct: 1139 VARSLELQLPDAVSNTVMLSFAW 1161


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  509 bits (1310), Expect = e-141
 Identities = 246/385 (63%), Positives = 300/385 (77%), Gaps = 4/385 (1%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS+PSLEN F KHGP+FS+  +N++V+KG VVIAKNPCLHPGD+RILEAVD PGL HL
Sbjct: 783  IQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPH+NEASGSDLDGDLYFVTWDE LIPPSK+SW+PM Y+P E K+L  +
Sbjct: 843  YDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQ 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII+FF+++M++  LG ICNAHVVH+D SE GA+DEKC+KLAELAA+AVDFPKTGK
Sbjct: 903  VNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASD--GEIPYDMDLKVPKLS 776
            + TMP  LKPK+YPDFMGK +FQSYKS KILGKLYR+VKD  D  GE+   ++L      
Sbjct: 963  LVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLEL------ 1016

Query: 775  TPQDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--Y 602
             P DIPYD  LE+PGS  F+ DAWN KCSYD QL  LLGQYKVN E EVV+GHIWS   Y
Sbjct: 1017 VPNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKY 1076

Query: 601  TNNKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHP 422
            +  K G +KE+L +AY+ L+KEF+  F  +  DF+   D +KN +YE+KASAWYQVTY+P
Sbjct: 1077 SAKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNP 1136

Query: 421  RWVKKSLETKALILASR*ILLPITW 347
             WV +SLE +     S  ++L   W
Sbjct: 1137 HWVARSLELQLPDAVSSTVMLSFAW 1161


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  509 bits (1310), Expect = e-141
 Identities = 246/383 (64%), Positives = 297/383 (77%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS+PSLEN F KHGP+FS+  +N++V+KG VVIAKNPCLHPGD+RILEAVD P L HL
Sbjct: 783  IQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPH+NEASGSDLDGDLYFVTWDE LIPPSK+SW+PM Y+P E K+L  +
Sbjct: 843  YDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQ 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII+FF+++M++  LG ICNAHVVH+D SE GA+DEKC+KLAELAA+AVDFPKTGK
Sbjct: 903  VNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP  LKPK+YPDFMGK +FQSYKS KILGKLYR+VKD  D E      L+V     P
Sbjct: 963  LVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEV----VP 1018

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
            +DIPYD  LE+ GS  FI DAWNSKCSYD QL  LLGQYKVN E EVV+G+IWS   Y  
Sbjct: 1019 KDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNA 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L +AY+ L+KEF+  F  +  DF+   D +KN +YE+KASAWYQVTYHP W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138

Query: 415  VKKSLETKALILASR*ILLPITW 347
            V +SLE +     S  ++L   W
Sbjct: 1139 VARSLELQLADAVSNTVMLSFAW 1161


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  508 bits (1307), Expect = e-141
 Identities = 246/383 (64%), Positives = 298/383 (77%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS+PSLEN F KHGP+FS+  +N++V+KG VVIAKNPCLHPGD+RILEAVD P L HL
Sbjct: 783  IQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPH+NEASGSDLDGDLYFVTWDE LIPPSK+SW+PM Y+P E K+L  +
Sbjct: 843  YDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQ 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII+FF+++M++  LG ICNAHVVH+D SE GA+DEKC+KLAELAA+AVDFPKTGK
Sbjct: 903  VNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP  LKPK+YPDFMGK +FQSYKS KILGKLYR+VKD  D E      L+V     P
Sbjct: 963  LVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEV----VP 1018

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
            +DIPYD  L +PGS  FI DAWNSKCSYD QL  LLGQYKVN E EVV+GHIWS   Y+ 
Sbjct: 1019 KDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSA 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L +AY+ L+KEF+  F  +  DF+   D +KN +YE+KASAWYQVTY+P W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHW 1138

Query: 415  VKKSLETKALILASR*ILLPITW 347
            V +SLE +     S  ++L   W
Sbjct: 1139 VARSLELQLPDAISSTVMLSFAW 1161


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  506 bits (1304), Expect = e-141
 Identities = 245/383 (63%), Positives = 297/383 (77%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS+PSLEN F KHG +FS+  +N++V+KG VVIAKNPCLHPGD+RILEAVD P L HL
Sbjct: 783  IQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPH+NEASGSDLDGDLYFVTWDE +IPPSK+SW+PM Y+P E K+L  +
Sbjct: 843  YDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQLGRQ 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII+FF+++M++  LG ICNAHVVH+D SE GA+DEKC+KLAELAA+AVDFPKTGK
Sbjct: 903  VNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP  LKPK+YPDFMGK +FQSYKS KILGKLYR+VKD  D E      L+V     P
Sbjct: 963  LVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEV----VP 1018

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
            +DIPYD  LE+ GS  FI DAWNSKCSYD QL  LLGQYKVN E EVV+GHIWS   Y+ 
Sbjct: 1019 KDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSA 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L +AY+ L+KEF+  F  +  DF+   D +KN +YE+KASAWYQVTYHP W
Sbjct: 1079 KKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHW 1138

Query: 415  VKKSLETKALILASR*ILLPITW 347
            V +SLE +     S  ++L   W
Sbjct: 1139 VARSLELQIPDAVSSTVMLSFAW 1161


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score =  505 bits (1301), Expect = e-140
 Identities = 243/370 (65%), Positives = 297/370 (80%), Gaps = 2/370 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS PSLE+ F KHG EFS + + + VIKG V IAKNPCLHPGD+RILEAVD PGL HL
Sbjct: 784  IQVSNPSLEDCFVKHGSEFSGAKKKLEVIKGLVAIAKNPCLHPGDVRILEAVDCPGLHHL 843

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+GERPHTNEASGSDLDGDLYFVTWDE L+PPSKRSW PM+Y P E K+LP +
Sbjct: 844  YDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLMPPSKRSWTPMEYAPGEVKQLPRE 903

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            VK++DII FFT++M+   LG ICNAHVVH+D SE+GA+DEKCIKLAELAAIAVDFPKTGK
Sbjct: 904  VKHTDIIEFFTKNMVNESLGAICNAHVVHADSSEYGALDEKCIKLAELAAIAVDFPKTGK 963

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            I TMPA LKPK+YPDFMGK +FQ+YKS+KILGKLYRK+KD+       + D +    +T 
Sbjct: 964  IVTMPAELKPKLYPDFMGKDEFQTYKSSKILGKLYRKIKDS-------NYDYEESSENTS 1016

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
             +I YD +LE+ GSE+FI DAWN KCSYD QL  LLGQYKVN+E EVV+GHIWS   Y++
Sbjct: 1017 VNIAYDQELEIAGSESFITDAWNCKCSYDGQLTGLLGQYKVNSEEEVVTGHIWSMPKYSS 1076

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L +AY  L+K+F+  F ++  +F+Q SD +KN+++E+KASAWYQVTY+  W
Sbjct: 1077 KKQGELKERLKHAYSTLRKDFRKVFESMDAEFDQLSDDEKNTMFERKASAWYQVTYNESW 1136

Query: 415  VKKSLETKAL 386
            VKKS + + +
Sbjct: 1137 VKKSKDLQVV 1146


>gb|AHO49120.1| RNA-dependent RNA polymerase 6 [Carica papaya]
          Length = 1195

 Score =  504 bits (1299), Expect = e-140
 Identities = 244/383 (63%), Positives = 293/383 (76%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS PSL+N FSKHG  FSE  RN+ V+KG VVIAKNPCLHPGDIRILEAVDAP L HL
Sbjct: 784  IQVSGPSLQNCFSKHGSRFSEIQRNLEVVKGFVVIAKNPCLHPGDIRILEAVDAPDLHHL 843

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPHTNEASGSDLDGDLYFVTWDE L+PPSKRSW PM Y+P + K L H 
Sbjct: 844  CDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLVPPSKRSWTPMDYEPADTKTLTHP 903

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII FF ++M+  +LG ICNAHVVH+D+SE+GA+DE CI LAELAAIAVDFPKTGK
Sbjct: 904  VSHQDIIGFFAKNMVHENLGAICNAHVVHADRSEYGALDENCILLAELAAIAVDFPKTGK 963

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP+ LKPK+YPDFMGK D++SYKSNKILG+LYR++KD       Y+ D       T 
Sbjct: 964  LVTMPSHLKPKIYPDFMGKEDYRSYKSNKILGRLYRRIKDV------YNDDTSNADFVT- 1016

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
             DIPYD DL+ PGS  F+LDAW  KC YD QL +LLGQYKV  E E+V+GH+WS   YT+
Sbjct: 1017 GDIPYDTDLDKPGSAGFLLDAWAQKCLYDWQLTSLLGQYKVKREEEIVTGHVWSMPRYTS 1076

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L ++Y  LKKEF+  F N+  +FEQ ++ +KN +YEQKASAWYQV YHP+W
Sbjct: 1077 RKEGELKERLKHSYSVLKKEFRQIFENMHPEFEQLTEDEKNILYEQKASAWYQVCYHPKW 1136

Query: 415  VKKSLETKALILASR*ILLPITW 347
            V KS E +  + A   ++L   W
Sbjct: 1137 VDKSRELQEPVCAENPLMLSFAW 1159


>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score =  503 bits (1295), Expect = e-140
 Identities = 248/384 (64%), Positives = 301/384 (78%), Gaps = 3/384 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS PSLE+ F+ HG EFSE+ +++ VIKG VVIAKNPCLHPGD+RILEAVD  GL HL
Sbjct: 782  IQVSKPSLEDCFANHGSEFSETKKDLEVIKGLVVIAKNPCLHPGDVRILEAVDVRGLHHL 841

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+GERPH NEASGSDLDGDLYFVTWD+ LIPPSKRSWLPM Y+P E K  P +
Sbjct: 842  YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDDTLIPPSKRSWLPMDYEPGEVKLKPRE 901

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V +SDII FFT++M+   LGTICNAHVVH+D SE+GA+DEKCIKLAELAAIAVDFPKTGK
Sbjct: 902  VTHSDIIEFFTKNMVNESLGTICNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGK 961

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKV-PKLST 773
            I TMP  LKP++YPDFMGK + QSYKS KILGKLYR+V+DA      Y++D +   +L+ 
Sbjct: 962  IVTMPPDLKPQMYPDFMGKEELQSYKSTKILGKLYRRVRDA------YNLDYEASSQLTY 1015

Query: 772  PQDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YT 599
            P DI YD +LEV GS++FI DAW+ KCSYD QL  LLGQYKVN+E EVV+GHIWS   ++
Sbjct: 1016 PADISYDQELEVTGSKDFIADAWSCKCSYDGQLAGLLGQYKVNSEDEVVTGHIWSMPKFS 1075

Query: 598  NNKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPR 419
            + K G +KE+L +AY+AL+K+++  F  +   F+Q  D +KN +YEQKASAWYQVTY   
Sbjct: 1076 SKKQGELKERLKHAYNALRKDYRKVFECMAPGFDQLPDHEKNVLYEQKASAWYQVTYQDN 1135

Query: 418  WVKKSLETKALILASR*ILLPITW 347
            WVKKS E + L  + + +LL   W
Sbjct: 1136 WVKKSKELQELDDSGKTVLLSFAW 1159


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  503 bits (1294), Expect = e-139
 Identities = 242/383 (63%), Positives = 295/383 (77%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS  SLE  F KHG +FSE+ +N++VIKGTVVIAKNPCLHPGD+R+LEAVD PGL HL
Sbjct: 786  IQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHL 845

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+GERPHTNEASGSDLDGDLYFVTWDE LIPPSKRSW+PM+YD  EAK L   
Sbjct: 846  YDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARP 905

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII FF ++M+  +LG ICNAHVVH+D SE+GA D+ C+ LAELAA AVDFPKTGK
Sbjct: 906  VNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGK 965

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + +MP  LKPK+YPDFMGK ++QSYKS KILG+LYR++KDA D ++    +L +     P
Sbjct: 966  VVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNL----VP 1021

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
             DIPYD DLEV G+ ++I DAW+ KCSYD QL  LL QYKV  E EVV+GHIWS   Y++
Sbjct: 1022 GDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSS 1081

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +K++L ++Y++LKKEF+  F  + L+FEQ  D +KN +YEQKASAWYQV YHP W
Sbjct: 1082 RKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHW 1141

Query: 415  VKKSLETKALILASR*ILLPITW 347
            VKKSLE +    A   ++L   W
Sbjct: 1142 VKKSLELQDPDGAGTSVMLSFAW 1164


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  496 bits (1276), Expect(2) = e-139
 Identities = 237/366 (64%), Positives = 285/366 (77%), Gaps = 2/366 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            +QVSTPSLEN F+KHG  F ++ +N++VIKG VV+AKNPCLHPGDIRILEAVDAPGL HL
Sbjct: 783  VQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G RPHT+EASGSDLDGDLYFVTWDE LIPP K+SW PM+Y+P EAK     
Sbjct: 843  HDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRS 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + D+I FF  +M+  +LG ICNAHVVHSD+SE+GA DE C+KLAELAA+AVDFPKTGK
Sbjct: 903  VTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            I TMP  LKPK+YPDFMGK D+QSYKSNKILG+LYRK+ DA D ++    +    +   P
Sbjct: 963  IVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSE----QNHVP 1018

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
             D+ YDMDLEVP + +FI DAW  KCSYD QL+ L+ QYK+  E E+V+GH+WS   YT+
Sbjct: 1019 SDVKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTS 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G ++E+L ++Y ALKKEF+  F  +   FE   D  KNS YEQKASAWYQVTYHP W
Sbjct: 1079 RKQGELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDW 1138

Query: 415  VKKSLE 398
            VKKSL+
Sbjct: 1139 VKKSLD 1144



 Score = 28.5 bits (62), Expect(2) = e-139
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 392  SLDPSKPINSLAHYLATRI 336
            ++DP KPIN L  YLA RI
Sbjct: 1179 NIDPKKPINILTKYLADRI 1197


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score =  501 bits (1290), Expect = e-139
 Identities = 245/383 (63%), Positives = 296/383 (77%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS+PSLE  F KHGPEFSE  +N++V+KG VVIAKNPCLHPGD+RILEAVD PGL HL
Sbjct: 783  IQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPH+NEASGSDLDGDLYFVTWDE LIPPSK+SW+PM Y P EAK+L  +
Sbjct: 843  YDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLGRQ 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V+++DII+FF ++M++  LG ICNAHVVH+D SE GAMDEKC+KLAELAA+AVDFPKTGK
Sbjct: 903  VQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP  LKPK+YPDFMGK  FQSY+S KILGKLYR+V D  D E      L+      P
Sbjct: 963  LVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEY----VP 1018

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
            +DIPYD +LE+PG E+FI DAWN KCSYD QL  LLGQYKVN E EVV+GHIWS   Y+ 
Sbjct: 1019 KDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSA 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L +AY+ L+KEF+  F  +  DF+     +KN +YE+KA AWY+VTYHP W
Sbjct: 1079 KKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHW 1138

Query: 415  VKKSLETKALILASR*ILLPITW 347
            V +SLE +     S  ++L   W
Sbjct: 1139 VTRSLELQLPDAVSNGVMLSFAW 1161


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  500 bits (1288), Expect = e-139
 Identities = 245/367 (66%), Positives = 288/367 (78%), Gaps = 3/367 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            +QVSTPSLEN FSKHG  FSE+ +N+ V+KG VVIAKNPCLHPGD+R+LEAVDAP L HL
Sbjct: 783  VQVSTPSLENCFSKHGSRFSET-KNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHL 841

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPHTNEASGSDLDGDLYFVTWDE LIPPSKRSW+PM+Y P E+K L  +
Sbjct: 842  NDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLTRQ 901

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V   DII FF  +M+   LG ICNAHVVH+D S++GA+DEKCI LAELAA AVDFPKTGK
Sbjct: 902  VMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGK 961

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLS-T 773
            + TMP  LKPK+YPDFMGK   QSY+SNKILG+LYR +KDA      YD D++ P L+  
Sbjct: 962  LVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDA------YDEDIEAPYLNFV 1015

Query: 772  PQDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YT 599
              DIPYD DLEVPGS +FI DAW  KCSYD QL  L+GQYKV  E EVV+G IWS   Y 
Sbjct: 1016 TGDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYN 1075

Query: 598  NNKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPR 419
            + K G +KE+L ++Y ALKKEF+ +F  L  D  + S+++KN +YEQKASAWYQVTYHP 
Sbjct: 1076 SRKQGELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPE 1135

Query: 418  WVKKSLE 398
            WVKKSL+
Sbjct: 1136 WVKKSLD 1142


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  500 bits (1288), Expect = e-139
 Identities = 248/385 (64%), Positives = 297/385 (77%), Gaps = 4/385 (1%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS PSLE+ F KHG  FSES + ++V+KGTVV+AKNPCLHPGDIRILEAVDAP L HL
Sbjct: 783  IQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPHTNEASGSDLDGDLYFVTWDE LIPPSKRSWLPM+YD  EAK+L   
Sbjct: 843  HDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRP 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII+FF ++M+  +LG ICNAHVVH+D SE+GA+DE CIKLAELAA AVDFPKTGK
Sbjct: 903  VNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKV-PKLST 773
            + TMP  LKPK+YPDFMGK D+QSY SNKILG+LYR+VKD  + +   D D     +L+ 
Sbjct: 963  LVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNL 1022

Query: 772  PQ-DIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--Y 602
             + DIPYD DLEV GS ++ILDAW+ KCSYD QL+ LL QYKV  E EVV+GHIWS    
Sbjct: 1023 VRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKC 1082

Query: 601  TNNKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHP 422
             + K G +KE+L  +YH+LKKEF+  F  +  DFEQ ++ +KN +YEQKASAWYQV YHP
Sbjct: 1083 NSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHP 1142

Query: 421  RWVKKSLETKALILASR*ILLPITW 347
            +WV KS+E +    A    +L   W
Sbjct: 1143 KWVNKSMELQEPDAAGCASMLSFAW 1167


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score =  490 bits (1261), Expect(2) = e-139
 Identities = 236/368 (64%), Positives = 286/368 (77%), Gaps = 2/368 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVSTP LE  FSKHG  F+E+  N+ V++GTVVIAKNPCLHPGD+RILEAVDAP L HL
Sbjct: 782  IQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHL 841

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFP+ GERPHTNEASGSDLDGDLYF TWD  LIPPSK+SW PM+Y P E K L  K
Sbjct: 842  YDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRK 901

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            +   DI+ FF ++M+   LGTICNAHVVH+D+S+HGA+DE CI+L+ELAA AVDFPKTGK
Sbjct: 902  ITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTGK 961

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP  LKPK+YPDFMGK   QSYKS KILGK+YR+++DA D +   DM        TP
Sbjct: 962  LVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDD---DMITSRELNFTP 1018

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
             D+ YD+DLEV G+E+FI +AW+ KCSYD QL  LLGQYKVN E E+V+GHIWS   Y +
Sbjct: 1019 GDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVS 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KEKL ++Y  LKK+F+  F NLG +FEQ +  ++N++YE+KASAWYQV YHP W
Sbjct: 1079 RKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTW 1138

Query: 415  VKKSLETK 392
            +KKSLE +
Sbjct: 1139 LKKSLELR 1146



 Score = 32.7 bits (73), Expect(2) = e-139
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -2

Query: 395  KSLDPSKPINSLAHYLATRI 336
            KS DP+KPINSLA YL+ R+
Sbjct: 1178 KSFDPTKPINSLASYLSDRM 1197


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score =  490 bits (1261), Expect(2) = e-139
 Identities = 236/368 (64%), Positives = 286/368 (77%), Gaps = 2/368 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVSTP LE  FSKHG  F+E+  N+ V++GTVVIAKNPCLHPGD+RILEAVDAP L HL
Sbjct: 782  IQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTVVIAKNPCLHPGDVRILEAVDAPELHHL 841

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFP+ GERPHTNEASGSDLDGDLYF TWD  LIPPSK+SW PM+Y P E K L  K
Sbjct: 842  YDCLVFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRK 901

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            +   DI+ FF ++M+   LGTICNAHVVH+D+S+HGA+DE CI+L+ELAA AVDFPKTGK
Sbjct: 902  ITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTGK 961

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP  LKPK+YPDFMGK   QSYKS KILGK+YR+++DA D +   DM        TP
Sbjct: 962  LVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDD---DMITSRELNFTP 1018

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
             D+ YD+DLEV G+E+FI +AW+ KCSYD QL  LLGQYKVN E E+V+GHIWS   Y +
Sbjct: 1019 GDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVS 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KEKL ++Y  LKK+F+  F NLG +FEQ +  ++N++YE+KASAWYQV YHP W
Sbjct: 1079 RKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTW 1138

Query: 415  VKKSLETK 392
            +KKSLE +
Sbjct: 1139 LKKSLELR 1146



 Score = 32.7 bits (73), Expect(2) = e-139
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -2

Query: 395  KSLDPSKPINSLAHYLATRI 336
            KS DP+KPINSLA YL+ R+
Sbjct: 1178 KSFDPTKPINSLASYLSDRM 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score =  497 bits (1280), Expect = e-138
 Identities = 242/383 (63%), Positives = 297/383 (77%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS+PSLE  F KHGP+FSE  +N++VIKG VVIAKNPCLHPGD+RILEAVD PGL HL
Sbjct: 784  IQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGLHHL 843

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPH+NEASGSDLDGDLYFVTWDE LIPPSK+SW+PM Y P EAK+L  +
Sbjct: 844  YDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQLGRQ 903

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V+++DII+FF+++M++  LG ICNAHVVH+D SE GA+DEKC+KLAELAA+AVDFPKTGK
Sbjct: 904  VQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGK 963

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            + TMP  LKPK+YPDFMGK  FQ+Y+S KILGKLYR+V D  D E      L+      P
Sbjct: 964  LVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEF----VP 1019

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
            +DIPYD ++E+ G E+FI DAWN KCSYD QL  LLGQYKVN E EVV+GHIWS   Y+ 
Sbjct: 1020 KDIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSA 1079

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L +AY+ L+KEF+  F  +  DF+     +KN +YE+KASAWY+VTYHP W
Sbjct: 1080 KKQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHW 1139

Query: 415  VKKSLETKALILASR*ILLPITW 347
            V +SLE +     S  ++L   W
Sbjct: 1140 VTRSLELQLPDAVSNGVMLSFAW 1162


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  496 bits (1278), Expect = e-138
 Identities = 242/383 (63%), Positives = 299/383 (78%), Gaps = 2/383 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            IQVS PS+EN F KHG  F+E+ +N  VI+G VVIAKNPCLHPGDIRILEAVDAPGL HL
Sbjct: 783  IQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHL 842

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+GERPHTNEASGSDLDGDLYFVTW+++LIPP K+SW PM+YDP E K++  +
Sbjct: 843  YDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQRE 902

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V + DII+FF ++M+   LGTICNAHVVH+D SE+GA+DEKCI LAELAA AVDFPKTGK
Sbjct: 903  VNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGK 962

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            I +MPA LKPK+YPDFMGK ++QSYKS KILG+LYR +KD  D ++    ++    L +P
Sbjct: 963  IVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEI---NLDSP 1019

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YTN 596
             DI YD DLEV GS ++I DAW  KCSYDRQL  LLGQYKV  E EVV+GHIWS   YT+
Sbjct: 1020 -DINYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTS 1078

Query: 595  NKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G++KEKL ++Y AL+KEF+  F ++  + EQ ++ ++N +YE+KASAWYQVTYHP+W
Sbjct: 1079 RKLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKW 1138

Query: 415  VKKSLETKALILASR*ILLPITW 347
            V+K LE +    A   ++L   W
Sbjct: 1139 VEKKLELQKSDGADPVVMLSFAW 1161


>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
            gi|462422376|gb|EMJ26639.1| hypothetical protein
            PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score =  490 bits (1262), Expect(2) = e-137
 Identities = 234/364 (64%), Positives = 289/364 (79%), Gaps = 2/364 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            +QVSTP LE+ F+KHG  F++  RN++VIKG VVIAKNPCLHPGDIRILEAVDAPGL HL
Sbjct: 781  VQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGLHHL 840

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPHT+EASGSDLDGDLYFVTWDE LIPPSK+SW+PM+YDP EAK     
Sbjct: 841  YDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQGRP 900

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V   DII+FF ++M   +LG ICNAHVVH+D+S++GA+D  C+KLAELAA+AVDFPKTGK
Sbjct: 901  VTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPKTGK 960

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLSTP 770
            I ++P  LKP++YPDF+GK D QSYKS KILG+LYRKV+DA D +     +L       P
Sbjct: 961  IVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHY----FP 1016

Query: 769  QDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSFYTNN- 593
             DIPYDMDLEVPG+ +F+ DAW  KCSYD QL+ L+GQYKV  E E+V+GH+WS   +N 
Sbjct: 1017 SDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNS 1076

Query: 592  -KHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPRW 416
             K G +KE+L ++Y+ALKKEF+  F NL  + E  +D +KN + E+KASAWYQVTYHP+W
Sbjct: 1077 KKQGELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKW 1136

Query: 415  VKKS 404
            VK+S
Sbjct: 1137 VKQS 1140



 Score = 28.9 bits (63), Expect(2) = e-137
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 401  GNKSLDPSKPINSLAHYLATRI 336
            G + +D +KPINSL  YLA RI
Sbjct: 1175 GVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  495 bits (1275), Expect = e-137
 Identities = 243/367 (66%), Positives = 285/367 (77%), Gaps = 3/367 (0%)
 Frame = -3

Query: 1489 IQVSTPSLENRFSKHGPEFSESMRNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLRHL 1310
            +QVSTPSLEN FSKHG  FSE+ +N+ V+KG V+IAKNPCLHPGD+R+LEAVDAP L HL
Sbjct: 783  VQVSTPSLENCFSKHGSRFSET-KNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHHL 841

Query: 1309 VDCLVFPQRGERPHTNEASGSDLDGDLYFVTWDEMLIPPSKRSWLPMKYDPPEAKKLPHK 1130
             DCLVFPQ+G+RPHTNEASGSDLDGDLYFVTWDE LIPPSKRSW+PM+Y P E+K    +
Sbjct: 842  NDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLKTRQ 901

Query: 1129 VKNSDIINFFTESMLRMDLGTICNAHVVHSDQSEHGAMDEKCIKLAELAAIAVDFPKTGK 950
            V   DII FF  +M+   LG ICNAHVVH+D S++GA+DEKCI LAELAA AVDFPKTGK
Sbjct: 902  VMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGK 961

Query: 949  IETMPAALKPKVYPDFMGKPDFQSYKSNKILGKLYRKVKDASDGEIPYDMDLKVPKLS-T 773
            + TMP  LKPK+YPDFMGK   QSY+S KILG+LYR++KDA      YD D+  P L+  
Sbjct: 962  LVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDA------YDEDIDAPYLNFV 1015

Query: 772  PQDIPYDMDLEVPGSENFILDAWNSKCSYDRQLQALLGQYKVNTEAEVVSGHIWSF--YT 599
              DIPYD DLEVPGS +FI DAW  KCSYD QL  LLGQYKV  E EVV+G IWS   Y 
Sbjct: 1016 TGDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYN 1075

Query: 598  NNKHGNVKEKLINAYHALKKEFKCSFMNLGLDFEQSSDKDKNSVYEQKASAWYQVTYHPR 419
            + K G +KE+L ++Y ALKKEF+ +F  L  D  + S+++KN  YEQKASAWYQVTYHP 
Sbjct: 1076 SRKQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPE 1135

Query: 418  WVKKSLE 398
            WVKKSL+
Sbjct: 1136 WVKKSLD 1142