BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00014286
         (1101 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [A...   557   e-156
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   548   e-153
ref|XP_007042502.1| DNA-directed RNA polymerase family protein [...   544   e-152
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr...   537   e-150
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   537   e-150
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   536   e-150
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su...   531   e-148
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su...   527   e-147
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ...   525   e-146
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ...   523   e-146
ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phas...   521   e-145
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype...   521   e-145
ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-...   521   e-145
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ...   519   e-145
ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prun...   519   e-144
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi...   519   e-144
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su...   518   e-144
ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II su...   516   e-144
gb|AFK41039.1| unknown [Medicago truncatula]                          516   e-144
ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutr...   515   e-143

>ref|XP_006853170.1| hypothetical protein AMTR_s00038p00194050 [Amborella trichopoda]
            gi|548856809|gb|ERN14637.1| hypothetical protein
            AMTR_s00038p00194050 [Amborella trichopoda]
          Length = 324

 Score =  557 bits (1435), Expect = e-156
 Identities = 277/323 (85%), Positives = 303/323 (93%), Gaps = 1/323 (0%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG VSYQRFPK+KIRE+KDDYLKFELRETD SMANALRR+M++EVPTIAIDLVEIE NS
Sbjct: 1    MEG-VSYQRFPKVKIREMKDDYLKFELRETDPSMANALRRIMLAEVPTIAIDLVEIEANS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEF+AHRLGLIPLTS++AMSMRFSRDCDACDGDGQCEYCSVEFQLSV+CD DQTLD
Sbjct: 60   SVLNDEFLAHRLGLIPLTSEKAMSMRFSRDCDACDGDGQCEYCSVEFQLSVKCDSDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARS-SSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKD 532
            VTS DL+S D  V+PVDVA R   S+G+DA++ RGIIIVKLRRGQELRLRAIARKGIGKD
Sbjct: 120  VTSADLVSSDIHVIPVDVAGRGMDSNGFDASEQRGIIIVKLRRGQELRLRAIARKGIGKD 179

Query: 531  HAKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPE 352
            HAKWSP ATVTFMYEP+IHIN+DLMETLSL++KR W+ESSPT+VFDIDPNT QVV VDPE
Sbjct: 180  HAKWSPGATVTFMYEPEIHINDDLMETLSLDEKREWVESSPTRVFDIDPNTHQVVVVDPE 239

Query: 351  AYTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAV 172
            AYTYD+EVIKKAEAMGKPGLVEIYA+E+ FIFTVESTGAIKASQLVINAI+VLKQKLDAV
Sbjct: 240  AYTYDDEVIKKAEAMGKPGLVEIYAREDSFIFTVESTGAIKASQLVINAIEVLKQKLDAV 299

Query: 171  RLTEDTEEADEQFGELGAHMRGG 103
            RL+ DTEE DEQFGELGAHMRGG
Sbjct: 300  RLSLDTEEGDEQFGELGAHMRGG 322


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  548 bits (1411), Expect = e-153
 Identities = 276/322 (85%), Positives = 301/322 (93%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEGA SYQRFP+IKIRELKDDY KFELR+TD+SMANALRRVMI+EVPT+AIDLVEIEVNS
Sbjct: 1    MEGA-SYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQC+YCSVEF L  +C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL S D +VVPVD    S SSGYD+++ RGIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLYSSDHTVVPVDF---SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEPDIHINEDLME+LSLE+K++W+ESSPTKVFDIDPNTQQVV VDPEA
Sbjct: 177  AKWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYDEEVIKKAE+MGKPGLV I AKE+ FIFTVESTGAIKASQLV+NAI++LKQKLDAVR
Sbjct: 237  YTYDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_007042502.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
            gi|508706437|gb|EOX98333.1| DNA-directed RNA polymerase
            family protein [Theobroma cacao]
          Length = 318

 Score =  544 bits (1401), Expect = e-152
 Identities = 273/322 (84%), Positives = 303/322 (94%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG VSYQRFPK+KIRELKDDY KFELR+TD+SMANALRRVMI+EVPTIAIDLVEIEVNS
Sbjct: 1    MEG-VSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L  +C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL S D +VVPVD    + S+GYD+++ RGIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLYSSDHTVVPVDF---TDSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP+IHINED+METL+LE+K++++ESSPT+VFDIDPNTQQVV VDPEA
Sbjct: 177  AKWSPAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EV+KKAEAMGKPGLVEIYAKE+ FIFTVESTGAIKASQLV+NAI+VLKQKLDAVR
Sbjct: 237  YTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
            gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
            RNA polymerases II, IV and V subunit 3-like [Citrus
            sinensis] gi|557524889|gb|ESR36195.1| hypothetical
            protein CICLE_v10028849mg [Citrus clementina]
          Length = 319

 Score =  537 bits (1384), Expect = e-150
 Identities = 274/323 (84%), Positives = 297/323 (91%), Gaps = 1/323 (0%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            M+GA SYQRFPK+KIRELKDDY KFELR+TD+SMANALRRVMI+EVPTIAIDLVEIEVNS
Sbjct: 1    MDGA-SYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L  +C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAA-QDRGIIIVKLRRGQELRLRAIARKGIGKD 532
            VTS+DL S D SVVPVD       +GYD+  Q RGIIIVKLRRGQELRLRAIARKGIGKD
Sbjct: 120  VTSKDLYSSDHSVVPVDFV---DPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKD 176

Query: 531  HAKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPE 352
            HAKWSPAATVTFMYEP+IHINEDLME+LSLE+K++W+ESSPTKVFDIDPNT QV  VD E
Sbjct: 177  HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAE 236

Query: 351  AYTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAV 172
            AYTYD+EVIKKAEAMGKPGLVEIYAKE+ FIFTVESTGAIKASQLV+NAI+VLKQKLDAV
Sbjct: 237  AYTYDDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAV 296

Query: 171  RLTEDTEEADEQFGELGAHMRGG 103
            RL+EDT EAD+QFGELGAHMRGG
Sbjct: 297  RLSEDTVEADDQFGELGAHMRGG 319


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  537 bits (1384), Expect = e-150
 Identities = 272/322 (84%), Positives = 298/322 (92%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG VSYQRFPKIKIRE+KDDY KFELRETD+SMANALRRVMI+EVPT+AIDLVEIEVNS
Sbjct: 1    MEG-VSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L  +C  D+TLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DLIS D +VVPVD    S SSGYD+A  +GIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLISSDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP+IHINEDLME+L+LE+K +W+ESSPTKVFDID ++QQVV  D EA
Sbjct: 177  AKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EV+KKAEAMGKPGLVEIYAKE+ FIFTVESTGAIKASQLV+NAI VLKQKLDAVR
Sbjct: 237  YTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  536 bits (1381), Expect = e-150
 Identities = 271/322 (84%), Positives = 298/322 (92%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG VSYQRFPKIKIRE+KDDY KFELRETD+SMANALRRVMI+EVPT+AIDLVEIEVNS
Sbjct: 1    MEG-VSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCE+CSVEF L  +C  D+TLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DLIS D +VVPVD    S SSGYD+A  +GIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLISSDHTVVPVDF---SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP+IHINEDLME+L+LE+K +W+ESSPTKVFDID ++QQVV  D EA
Sbjct: 177  AKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EV+KKAEAMGKPGLVEIYAKE+ FIFTVESTGAIKASQLV+NAI VLKQKLDAVR
Sbjct: 237  YTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Fragaria vesca subsp. vesca]
          Length = 318

 Score =  531 bits (1367), Expect = e-148
 Identities = 264/322 (81%), Positives = 298/322 (92%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG  SYQRFP++KIRE++ DYLKFELR+TD+S+ANALRRVMI+EVPT+AIDLVEIE+NS
Sbjct: 1    MEGK-SYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEF L  RC  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS++L+S D +VVPVD    S +SGY+A++ RGIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKELLSSDHTVVPVDF---SDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEPDI INE++M+TLSLEDK  W++SSPTKVF+IDPNT +VV VDPEA
Sbjct: 177  AKWSPAATVTFMYEPDIRINEEMMDTLSLEDKAAWVDSSPTKVFEIDPNTGKVVVVDPEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EVIKKAEAMGKPGLV+I AKE+ FIFTVESTGAIKASQL++NAI++LKQKLDAVR
Sbjct: 237  YTYDDEVIKKAEAMGKPGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEILKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Cicer
            arietinum]
          Length = 319

 Score =  527 bits (1358), Expect = e-147
 Identities = 265/322 (82%), Positives = 298/322 (92%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEGA SY R P++KIRELKDDY+KFELR+TD+S+ANALRRVMISEVPTIAIDLVEIEVNS
Sbjct: 1    MEGA-SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEF L V+C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL S D +VVPVD +A  SS   +++  RGIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLYSSDHTVVPVDFSADPSS--LESSDGRGIIIVKLRRGQELRLRAIARKGIGKDH 177

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEPDIHINEDLME+L+LE+KR W++SSPT+VFDIDP TQQV+ VDPEA
Sbjct: 178  AKWSPAATVTFMYEPDIHINEDLMESLTLEEKREWVDSSPTRVFDIDPVTQQVMVVDPEA 237

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            Y+YD+EVIKKAEAMGKPGLVEI AK++ FIFTVESTGA+KASQL++NAI++LKQKLDAVR
Sbjct: 238  YSYDDEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVR 297

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 298  LSEDTVEADDQFGELGAHMRGG 319


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
            [Glycine max]
          Length = 319

 Score =  525 bits (1351), Expect = e-146
 Identities = 260/322 (80%), Positives = 294/322 (91%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG VSY R P++KIRELKDDY KFELR+TD+S+ANALRRVMI+EVPT+AIDLVEIEVNS
Sbjct: 1    MEGGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 60

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L V+C  DQTLD
Sbjct: 61   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 120

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL S DP+V PVD    S  S  D+  +RGIIIVKLRRGQEL+LRAIARKGIGKDH
Sbjct: 121  VTSKDLYSSDPTVSPVDF---SDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDH 177

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP+IHINEDLMETL+LE+KR W++SSPT+VF+IDP TQQV+ VD EA
Sbjct: 178  AKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEA 237

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EV+KKAEAMGKPGLVEI A+++ FIFTVESTGA+KASQLV+NAI++LKQKLDAVR
Sbjct: 238  YTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVR 297

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 298  LSEDTVEADDQFGELGAHMRGG 319


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Glycine max]
          Length = 320

 Score =  523 bits (1348), Expect = e-146
 Identities = 259/322 (80%), Positives = 295/322 (91%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG VSY R P++KIRELKDDY KFELR+TD+S+ANALRRVMI+EVPT+AIDLVEIEVNS
Sbjct: 1    MEGGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 60

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L V+C  DQTLD
Sbjct: 61   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 120

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL S DP+V PVD +  S++   D   +RGIIIVKLRRGQEL+LRAIARKGIGKDH
Sbjct: 121  VTSKDLYSSDPTVSPVDFSDPSATDSPD--NNRGIIIVKLRRGQELKLRAIARKGIGKDH 178

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP+IHINEDLMETL+LE+KR W++SSPT+VF+IDP TQQV+ VD EA
Sbjct: 179  AKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEA 238

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EV+KKAEAMGKPGLVEI A+++ FIFTVESTGA+KASQLV+NAI++LKQKLDAVR
Sbjct: 239  YTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVR 298

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 299  LSEDTVEADDQFGELGAHMRGG 320


>ref|XP_007157771.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
            gi|561031186|gb|ESW29765.1| hypothetical protein
            PHAVU_002G097400g [Phaseolus vulgaris]
          Length = 318

 Score =  521 bits (1343), Expect = e-145
 Identities = 260/322 (80%), Positives = 298/322 (92%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEGA SY R P++KIRELKDDY KFELR+TD+S+ANALRRVMI+EVPTIAIDLVEIEVNS
Sbjct: 1    MEGA-SYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L V+C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            V+S+DL S DPSVVPVD +  +S+   D+++ RG+IIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VSSKDLYSSDPSVVPVDFSDPAST---DSSESRGVIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP+IH+NEDLMETL+LE+KR W++SSPT+VF+IDP TQQV+ VD EA
Sbjct: 177  AKWSPAATVTFMYEPEIHLNEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDSEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            Y+YD+EVIKKAEAMGKPGLVEI A+++ FIFTVESTGAIK+SQLV+NAI++LKQKLDAVR
Sbjct: 237  YSYDDEVIKKAEAMGKPGLVEIIARQDSFIFTVESTGAIKSSQLVLNAIEILKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
            [Populus trichocarpa] gi|550331423|gb|EEE87820.2|
            DNA-directed RNA polymerase II 36 kDa polypeptide B
            family protein [Populus trichocarpa]
          Length = 323

 Score =  521 bits (1343), Expect = e-145
 Identities = 264/321 (82%), Positives = 293/321 (91%), Gaps = 2/321 (0%)
 Frame = -1

Query: 1059 AVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNSSVL 880
            +VSYQRFPKIKIRE+KDDYLKFELRETD+SMANALRRVMI+EVPTIAIDLVEIEVNSSVL
Sbjct: 3    SVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62

Query: 879  NDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLDVTS 700
            NDEFIAHRLGLIPLTS+RAM MRFSRDCDACDGDGQCEYCSVEF L  +C  DQTLDVTS
Sbjct: 63   NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDVTS 122

Query: 699  QDLISLDPSVVPVDVAARSSSSG-YDAAQ-DRGIIIVKLRRGQELRLRAIARKGIGKDHA 526
            +DL S D +V+PVD +  S ++  +D  +  RGIIIVKLRRGQELRLRAIARKGIGKDHA
Sbjct: 123  KDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKDHA 182

Query: 525  KWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEAY 346
            KWSPAATVTFMYEP+IHINEDLMETL+LE+K +WIESSPTKVFDID  TQQVV VDPEAY
Sbjct: 183  KWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAY 242

Query: 345  TYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVRL 166
            TYD+EVIKKAEAMGK GL++I AKE+ FIFTVESTGA+KASQLV+NAI++LKQKLDAVRL
Sbjct: 243  TYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRL 302

Query: 165  TEDTEEADEQFGELGAHMRGG 103
            ++DT EAD+QFGELG HMRGG
Sbjct: 303  SDDTVEADDQFGELGVHMRGG 323


>ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
            gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation
            [Medicago truncatula] gi|355508950|gb|AES90092.1|
            DNA-directed RNA polymerase II subunit RPB3-A [Medicago
            truncatula]
          Length = 318

 Score =  521 bits (1341), Expect = e-145
 Identities = 260/322 (80%), Positives = 295/322 (91%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEGA SY R P++KIRELKDDY+KFELR+TD+S+ANALRRVMISEVPT+AIDLVEIEVNS
Sbjct: 1    MEGA-SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEF L V+C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            V+S+DLIS D +V PVDV    +S   D    RGIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VSSKDLISSDHTVTPVDVPGGDASIESDG---RGIIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEPDIHINEDLME+L+LE+K+ W++SSPT+VFDIDP TQQV+ VDPEA
Sbjct: 177  AKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            Y+YD+EVIKKAEAMGKPGL+EI AK++ FIFTVESTGA+KASQL++N+I++LKQKLDAVR
Sbjct: 237  YSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
            [Solanum tuberosum]
          Length = 319

 Score =  519 bits (1337), Expect = e-145
 Identities = 259/322 (80%), Positives = 298/322 (92%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG VSYQRFPKIKIRE+KDD++KFELRETD+S+ANALRR+MI+EVPTIAIDLVEIEVNS
Sbjct: 1    MEG-VSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFI+HRLGL+PLTS+RAMSMRFSRDCDACDGDGQCEYCSVEF L V+C  DQTLD
Sbjct: 60   SVLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL+S D +VVPVD +  SSS  +D   ++GIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLLSSDHTVVPVDYSDTSSS--FDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDH 177

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP+I+INED+ME+L+LE+K   +ESSPTKVF IDP  +QV+ VDPEA
Sbjct: 178  AKWSPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEA 237

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EV+KKAEAMGKPG+VEI+AKE+ FIFTVE+TGA+KASQLV+NAI+VLKQKLDAVR
Sbjct: 238  YTYDDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVR 297

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L++DT EAD+QFGELGAHMRGG
Sbjct: 298  LSDDTVEADDQFGELGAHMRGG 319


>ref|XP_007201816.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
            gi|462397216|gb|EMJ03015.1| hypothetical protein
            PRUPE_ppa008812mg [Prunus persica]
          Length = 318

 Score =  519 bits (1336), Expect = e-144
 Identities = 254/322 (78%), Positives = 296/322 (91%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG  SYQR P++KIRE++DDY+KFELR+TD+S+ANALRRVMI+EVPT+AIDLVEIE+NS
Sbjct: 1    MEGK-SYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCE+CSVEF L  +C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL+S D +VVPVD    S S+G ++++ +GIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLLSSDHTVVPVDF---SDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEPDI INE+LM+ L+L++K+ W+ESSPTKVFD DP T++V+ VDPEA
Sbjct: 177  AKWSPAATVTFMYEPDIRINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVMVVDPEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EVIKKAEAMGKPGLV+I AKE+ FIFTVESTGA+KASQL++NAI++LKQKLDAVR
Sbjct: 237  YTYDDEVIKKAEAMGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi|297329735|gb|EFH60154.1|
            RBP36A [Arabidopsis lyrata subsp. lyrata]
          Length = 319

 Score =  519 bits (1336), Expect = e-144
 Identities = 264/322 (81%), Positives = 294/322 (91%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            M+GA +YQRFPKI IRELKDDY KFELRETD SMANALRRVMISEVPT+AIDLVEIEVNS
Sbjct: 1    MDGA-TYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF+LS +C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL S DP+V PVD    SS+S  D+++ +GIIIVKLRRGQEL+LRAIARKGIGKDH
Sbjct: 120  VTSRDLYSADPTVTPVDFTIDSSAS--DSSEQKGIIIVKLRRGQELKLRAIARKGIGKDH 177

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEPDI INED+M+TLS E+K + IESSPTKVF IDP T+QVV VDPEA
Sbjct: 178  AKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDPVTRQVVVVDPEA 237

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYDEEVIKKAEAMGKPGL+EI+ K++ FIFTVESTGA+KASQLV+NAI +LKQKLDAVR
Sbjct: 238  YTYDEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVR 297

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L++DT EAD+QFGELGAHMRGG
Sbjct: 298  LSDDTVEADDQFGELGAHMRGG 319


>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Solanum lycopersicum]
          Length = 319

 Score =  518 bits (1333), Expect = e-144
 Identities = 257/322 (79%), Positives = 298/322 (92%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG VSYQRFPKIK+RE+KDD++KFELR+TD+S+ANALRR+MI+EVPTIAIDLVEIEVNS
Sbjct: 1    MEG-VSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFI+HRLGL+PLTS+RAMSMRFSRDCDACDGDGQCEYCSVEF L V+C  DQTLD
Sbjct: 60   SVLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL+S D +VVPVD +  SSS  +D   ++GIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLLSSDHTVVPVDYSDASSS--FDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDH 177

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP+I+INED+ME+L+LE+K   +ESSPTKVF IDP  +QV+ VDPEA
Sbjct: 178  AKWSPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEA 237

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EV+KKAEAMGKPG+VEI+AKE+ FIFTVE+TGA+KASQLV+NAI+VLKQKLDAVR
Sbjct: 238  YTYDDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVR 297

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L++DT EAD+QFGELGAHMRGG
Sbjct: 298  LSDDTVEADDQFGELGAHMRGG 319


>ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Cucumis sativus]
          Length = 320

 Score =  516 bits (1329), Expect = e-144
 Identities = 258/322 (80%), Positives = 293/322 (90%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEG+ SYQRFPK+KIREL+DDY KFELR+TD+SMANALRRVMI+EVPTIAIDLVEIEVNS
Sbjct: 1    MEGS-SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEF L  +C  DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL S D +VVPVD +  ++++G +A   +GIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VTSKDLYSSDHTVVPVDFSDSAAATG-EALDTKGIIIVKLRRGQELRLRAIARKGIGKDH 178

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEP IHINEDLMETL+LE+KR W+ES PT+VF++D  T QV+ VDPEA
Sbjct: 179  AKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEA 238

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYD+EVIKKAEAMGK GLV+I A+E+ FIFTVESTGAIKASQL++NAI +LKQKLDAVR
Sbjct: 239  YTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR 298

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L++DT EAD+QFGELGAHMRGG
Sbjct: 299  LSDDTVEADDQFGELGAHMRGG 320


>gb|AFK41039.1| unknown [Medicago truncatula]
          Length = 318

 Score =  516 bits (1329), Expect = e-144
 Identities = 259/322 (80%), Positives = 294/322 (91%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            MEGA SY R P++KIRELKDDY+KFELR+TD+S+ANALRRVMISEVPT+AIDLVEIEVNS
Sbjct: 1    MEGA-SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNS 59

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEF L V+   DQTLD
Sbjct: 60   SVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKRITDQTLD 119

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            V+S+DLIS D +V PVDV    +S   D    RGIIIVKLRRGQELRLRAIARKGIGKDH
Sbjct: 120  VSSKDLISSDHTVTPVDVPGGDASIESDG---RGIIIVKLRRGQELRLRAIARKGIGKDH 176

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEPDIHINEDLME+L+LE+K+ W++SSPT+VFDIDP TQQV+ VDPEA
Sbjct: 177  AKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEA 236

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            Y+YD+EVIKKAEAMGKPGL+EI AK++ FIFTVESTGA+KASQL++N+I++LKQKLDAVR
Sbjct: 237  YSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVR 296

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L+EDT EAD+QFGELGAHMRGG
Sbjct: 297  LSEDTVEADDQFGELGAHMRGG 318


>ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutrema salsugineum]
            gi|557089698|gb|ESQ30406.1| hypothetical protein
            EUTSA_v10011661mg [Eutrema salsugineum]
          Length = 320

 Score =  515 bits (1327), Expect = e-143
 Identities = 257/322 (79%), Positives = 292/322 (90%)
 Frame = -1

Query: 1068 MEGAVSYQRFPKIKIRELKDDYLKFELRETDSSMANALRRVMISEVPTIAIDLVEIEVNS 889
            M+   SYQRFPK+KIRELKDDY KFELRETD SMANALRRVMISEVPT+AIDLVEI +NS
Sbjct: 1    MDTGASYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIMINS 60

Query: 888  SVLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFQLSVRCDQDQTLD 709
            SVLNDEFIAHRLGLIPLTS+RAMSMRFSRDCDACDGDGQCE+CSVEFQL  +C  DQTLD
Sbjct: 61   SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFQLGAKCVTDQTLD 120

Query: 708  VTSQDLISLDPSVVPVDVAARSSSSGYDAAQDRGIIIVKLRRGQELRLRAIARKGIGKDH 529
            VTS+DL S DP+V PVD A   S++  D+++ RGIIIVKLRRGQEL+LRAIARKGIGKDH
Sbjct: 121  VTSRDLYSADPTVTPVDFATDPSAT--DSSEQRGIIIVKLRRGQELKLRAIARKGIGKDH 178

Query: 528  AKWSPAATVTFMYEPDIHINEDLMETLSLEDKRNWIESSPTKVFDIDPNTQQVVAVDPEA 349
            AKWSPAATVTFMYEPDI+INED+++TL+ E+K + IESSPTKVF IDP T+QVV VDPEA
Sbjct: 179  AKWSPAATVTFMYEPDININEDMVDTLTDEEKFDLIESSPTKVFGIDPVTRQVVVVDPEA 238

Query: 348  YTYDEEVIKKAEAMGKPGLVEIYAKENDFIFTVESTGAIKASQLVINAIQVLKQKLDAVR 169
            YTYDEEVIKKAEA+GKPGL+EI+ K++ FIFTVE+TGA+KASQLV+NAI +LKQKLDAVR
Sbjct: 239  YTYDEEVIKKAEALGKPGLIEIHPKDDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVR 298

Query: 168  LTEDTEEADEQFGELGAHMRGG 103
            L++DT EAD+QFGELGAHMRGG
Sbjct: 299  LSDDTVEADDQFGELGAHMRGG 320