BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00013122
         (1915 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   677   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   675   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       659   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      649   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      647   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   639   e-180
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   636   e-180
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   628   e-177
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   624   e-176
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   621   e-175
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   610   e-172
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   610   e-172
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   601   e-169
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   600   e-169
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   597   e-168
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   597   e-168
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   597   e-168
ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis...   595   e-167
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   595   e-167
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   589   e-165

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  677 bits (1748), Expect = 0.0
 Identities = 340/575 (59%), Positives = 436/575 (75%), Gaps = 7/575 (1%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQV GFP+ V+AE VK+FLE+ TG GTVYALK+R  K KG+ R  +A+VQFTT   
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK-KGVGR-LYAIVQFTTKEA 58

Query: 1525 AASLVNLS-----LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVL 1361
            A ++++L+     L YG   L   + E D V +PR  M ++E I LHFGC++S EKF VL
Sbjct: 59   ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVL 118

Query: 1360 WKSVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAA 1181
            W+ V   VNFGFG+RK+ FLL+H G EY+LE+ Y++IW I+L CP+ Q  K+LLIQ+L A
Sbjct: 119  WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 178

Query: 1180 PKIYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELP 1001
            P+I++K   S       P+ ++FK+  DDQWVR  DFT    IGQS+G+C+ELP   ELP
Sbjct: 179  PRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELP 238

Query: 1000 PQIRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCL 821
               ++NF YYKE E  F +ETGS++S SLDLVPIVGPP GI LPY+IL ++N+LVQNGC+
Sbjct: 239  -DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCV 297

Query: 820  AGPILDASFFASVNPQLTPSAY--VEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFP 647
            AGP+LD++F+  V+P   P +   +EHAL+KLYHL ECCYEP +WL +QY KY  S+  P
Sbjct: 298  AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKP 357

Query: 646  NPPVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEK 467
            + P ISL DGLVY+ RVQ+TPS+VYFC PE+ VSNRVLRH+   ++NF+R+SF+DE+ +K
Sbjct: 358  SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 417

Query: 466  LRSTDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFA 287
            + STDLSPR SS   D   T IY RILSTLRNGI IGD+KF+ LAFSSSQLR++SAWMFA
Sbjct: 418  IHSTDLSPRGSS-ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 476

Query: 286  SKDGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNG 107
            S+ GLTAA IR+WMG+F+EIRNVAKYAARLGQSFSSSKETL+V+ +E+E+IPD+ IE   
Sbjct: 477  SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 536

Query: 106  MKYIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
             KY+FSDGIGK+S  FA+KVA KCG++   PSAFQ
Sbjct: 537  TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 571


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  675 bits (1741), Expect = 0.0
 Identities = 346/571 (60%), Positives = 429/571 (75%), Gaps = 3/571 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQVS FPS+V AE VK FLE YTGK TVYALKIR  K  G   RA+A+VQFT +  
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG---RAYAIVQFTKSTD 57

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A  ++ L+   L+YG+  L+  + ENDIV KPR  + ++E + LHFGCQVS EKF VLW+
Sbjct: 58   AELIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWE 117

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
             V   VNFG G+RKL+FLL+H  VEY+L++ Y++IW I+L  P+NQ  K+LLIQ+  AP+
Sbjct: 118  EVDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPR 177

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            IYEK   S G     P+++YF D  DDQWVR  DFT   CIGQSS +CLELP   +LP  
Sbjct: 178  IYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLP-N 236

Query: 994  IRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAG 815
             R+NF YYKE EG F +E+GSS+S +L+LVPIVGP  GI LPY+IL ++N+LVQNGC+ G
Sbjct: 237  FRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPG 296

Query: 814  PILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPPV 635
            P LDA+F+  VNP      Y++HALEKLY+L ECC+EP KWL EQY  Y  SK  P  PV
Sbjct: 297  PALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPV 356

Query: 634  ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRST 455
            ISL DGLV +RRVQITPS+VYFC PE+ VSNRVLRH+H+ ++NF+R++FVDEE EK+ ST
Sbjct: 357  ISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHST 416

Query: 454  DLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKDG 275
            DL  R        + T IY RILSTL+NGI IGDK+F+ LAFSSSQLR+NSAWMFAS++G
Sbjct: 417  DLLTR-------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREG 469

Query: 274  LTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKYI 95
            LTAA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V  +E+E+I D+ I+R+G+ Y+
Sbjct: 470  LTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYV 529

Query: 94   FSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            FSDGIGKIS  FA+KVA KC +   TPSAFQ
Sbjct: 530  FSDGIGKISAKFAKKVAAKCRLNGRTPSAFQ 560


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  659 bits (1700), Expect = 0.0
 Identities = 340/572 (59%), Positives = 422/572 (73%), Gaps = 4/572 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQ+SGFPS VSAE VKEFLE +TG+GTVYA+KIRP K  G   R++A+VQF T   
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGG--SRSYAIVQFMTVET 58

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A  ++ L+   L YG   L     E DIV KPR ++ SL+ + LHFGCQ+SKEKF  LW+
Sbjct: 59   AELIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
                 V+FG GLR+L F LT+  VEY+L++ Y+++W I+L  P+ Q  K+LLIQ+L AP+
Sbjct: 119  VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            +YEK           P+ +YFKD  DDQWVRA DFT   CIG SS + LELP   +LP  
Sbjct: 179  VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLP-D 237

Query: 994  IRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAG 815
            +R+NF YYKE E  F +E+GSSFS +LDLVPIVGPPSGI LP++ + ++N+L+QNGCL+G
Sbjct: 238  LRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSG 297

Query: 814  PILDASFFASVNPQLTPSA-YVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPP 638
            P LD  F+  V+PQ   +   + +ALEKL++L EC YEP  WL EQY KY  +   P PP
Sbjct: 298  PTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPP 357

Query: 637  VISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRS 458
             I+L  GLVY+RRVQ+TPSKVYFC PE+ VSNRVLR Y + ++ F+RVSFVDEE EKL S
Sbjct: 358  AIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFS 417

Query: 457  TDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKD 278
            TDLSPRTS+  EDR+ T IY+RILS LRNGI IGD+KF+ LAFSSSQLRDNS WMFA+ D
Sbjct: 418  TDLSPRTSNANEDRR-TGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVD 476

Query: 277  GLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKY 98
            G +A  IR+W+GDF+ IRNVAKYAARLGQSF SS ETLTV+  E EVI DI IER  +KY
Sbjct: 477  GHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKY 536

Query: 97   IFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            +FSDGIGKIS TFA++VAKKCG++   PSAFQ
Sbjct: 537  VFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQ 568


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  649 bits (1674), Expect = 0.0
 Identities = 332/571 (58%), Positives = 425/571 (74%), Gaps = 3/571 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQV GF S VSA  VK FLE YTG+ TVYALKIR  K  G   RAFA+VQFT ++ 
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A  ++ L+   L+YG   L+  + E DIV KPR  + ++E + ++FGCQVS+EKF VLWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWK 117

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
            +    +NFG G+RKLEFLL++C  +YKLE+ Y++IW I+LRCP +Q  K LLIQ+  AP+
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            IYEK   +       P+++YFKD  DDQWVR  DFT   CIGQSS + LELP + +LP  
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLP-N 236

Query: 994  IRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAG 815
             R+NF YYKE+EG   +E+GSS+S +L LVPIV P   I LP++IL +VN+LVQNGC+ G
Sbjct: 237  FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296

Query: 814  PILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPPV 635
            P LD +F+  V+P      Y++HALEKLY+L ECCYEP +WL E+Y  + +S+ +   P 
Sbjct: 297  PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356

Query: 634  ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRST 455
            ISL +GLVY+RRVQITPS+VYFC PE+ VSNRVLR +HN ++NF+R+SFVDEE EK+ ST
Sbjct: 357  ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416

Query: 454  DLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKDG 275
            ++  R        + T IYKRILSTLRNGI IG+K+F+ LAFSSSQLR+NSAWMFAS+ G
Sbjct: 417  NVQAR-------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKG 469

Query: 274  LTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKYI 95
            LTAA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V+ +E+ +IPDI I ++G+KY+
Sbjct: 470  LTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYV 529

Query: 94   FSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            FSDGIGKIS  FA+KVA KC ++  TPSAFQ
Sbjct: 530  FSDGIGKISAEFAKKVAAKCRLKGCTPSAFQ 560


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  647 bits (1668), Expect = 0.0
 Identities = 330/571 (57%), Positives = 423/571 (74%), Gaps = 3/571 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQV GF S VSA  VK FLE YTG+ TVYALKIR  K  G   RAFA+VQFT ++ 
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A  ++ L+   L+YG   L+  + E DIV KPR  + ++E + ++F C VS+EKF VLWK
Sbjct: 58   AGLIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWK 117

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
            +    +NFG G+RKLEFLL++C  +YKLE+ Y++IW I+LRCP +Q  K LLIQ+  AP+
Sbjct: 118  ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            IYEK   +       P+++YFKD  DDQWVR  DFT   CIGQSS +CLELP + +LP  
Sbjct: 178  IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLP-N 236

Query: 994  IRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAG 815
             R+NF YYKE+EG   +E+GSS+S +L LVPIV P   I LP++IL +VN+LVQNGC+ G
Sbjct: 237  FRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPG 296

Query: 814  PILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPPV 635
            P LD +F+  V+P      Y++HALEKLY+L ECCYEP +WL E+Y  + +S+ +   P 
Sbjct: 297  PALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPT 356

Query: 634  ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRST 455
            ISL +GLVY+RRVQITPS+VYFC PE+ VSNRVLR +HN ++NF+R+SFVDEE EK+ ST
Sbjct: 357  ISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHST 416

Query: 454  DLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKDG 275
            ++  R        + T IYKRILSTLRNGI IG+K+F+ LAFSSSQLR+NSAWMFAS+ G
Sbjct: 417  NVQAR-------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKG 469

Query: 274  LTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKYI 95
            LTAA IR WMG+F +IRNVAKYAARLGQSFSSS ETL+V+ +E+ +IPDI I ++G+KY+
Sbjct: 470  LTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYV 529

Query: 94   FSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            F DGIGKIS  FA+KVA KC ++  TPSAFQ
Sbjct: 530  FPDGIGKISAEFAKKVAAKCRLKGCTPSAFQ 560


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  639 bits (1649), Expect = e-180
 Identities = 329/571 (57%), Positives = 411/571 (71%), Gaps = 3/571 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            M +T++VSGFPSS +A  V+ FLE++TG GTV ALKIR  +  G   R +A+VQFTT   
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGA--RKYAIVQFTTTRA 58

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A  +++L+   L YG   L     + DI+ +PR  + ++E + LHFG Q SKEKF  +W 
Sbjct: 59   AEQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
                 VNFG G+RKL F L+H   EYKL + +++IW I+L  P+ Q  K+LLIQ+  AP+
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            IYE+   S       P+++YF+D  D+QWVR  DFT    IG SS +CLELP   +LP  
Sbjct: 179  IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLP-N 237

Query: 994  IRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAG 815
              +NF YYKE+EG F +E+G +FS + DLVPIVGP SG+ LPY+IL RVN+LVQNGCLAG
Sbjct: 238  FNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAG 297

Query: 814  PILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPPV 635
             +LD  F+  V+P   P   +E+ALEKLYHL ECCYEP KW  EQY KY  S + P  PV
Sbjct: 298  SMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPV 357

Query: 634  ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRST 455
            +SL  GLVY+ +VQITP KV+FC PEV VSNRVLR Y   ++NF+RVSFVDEE EK+ ST
Sbjct: 358  LSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHST 417

Query: 454  DLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKDG 275
            D+SPRTSS+ E R+ TAIY RILSTL+NGI IGDKKF+ LAFSSSQLR+NS WMFAS+ G
Sbjct: 418  DVSPRTSSRNELRR-TAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLG 476

Query: 274  LTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKYI 95
            LTAA IR WMG F +IRNVA+YAARLGQSF SS ETL+V+  E+E+IPDI + R G +Y+
Sbjct: 477  LTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYL 536

Query: 94   FSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            FSDGIGKIS  FA+KVA KCG + FTPSAFQ
Sbjct: 537  FSDGIGKISAEFARKVAIKCGCKGFTPSAFQ 567


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  636 bits (1641), Expect = e-180
 Identities = 335/572 (58%), Positives = 412/572 (72%), Gaps = 4/572 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            M +TIQV GFPS VSA+ +KEFLE YTG+GT+ AL+I+  + +       A VQFT+   
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIK--QPRSGASMTHAKVQFTSFEL 58

Query: 1525 AASLVNL---SLHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A  ++ L    + YG   L+  + + DI+ KPR  + S++ I LHFGCQ+S E+F VLWK
Sbjct: 59   AEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
            ++   V FG GLRK  F L+H   EYKLE+SY++IW IQL+ P+ Q  KFLLIQ+L AP+
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178

Query: 1174 IYEKPRCSLGQTNGYPIVDY-FKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPP 998
            IYEK           P++ Y FK+A DDQWVR IDFT    IGQS  +CLELP   +LP 
Sbjct: 179  IYEKD---------VPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLP- 228

Query: 997  QIRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLA 818
              R+NF YYKE++G F +E+GSS+SH+L LVPI+GPP G  LP+ IL ++N LVQNGCL+
Sbjct: 229  NFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLS 288

Query: 817  GPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPP 638
            GP LD SFF  V+P+  P +++EHALEKLYHL ECCYEPV+WL EQY  Y + K     P
Sbjct: 289  GPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVK-KPVAGSP 347

Query: 637  VISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRS 458
             ISL  GLVY+RRVQITP KVYFC PEV VSNRVLR+Y   ++NF+RVSF+DE  EK+ S
Sbjct: 348  AISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHS 407

Query: 457  TDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKD 278
            T +SPR S +G   + T +Y+RILS L+NGI IGDKKFD LAFSSSQLRDNSAWMFAS+ 
Sbjct: 408  TVISPRMSKEG---RRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRP 464

Query: 277  GLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKY 98
            GLTAA IR WMGDF +IRNVAKYAARLGQSFSSSKETL V  +E+E IPDI I +    Y
Sbjct: 465  GLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTY 524

Query: 97   IFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            +FSDGIGKIS   A +VA KCG +  TPSAFQ
Sbjct: 525  VFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQ 556


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  628 bits (1619), Expect = e-177
 Identities = 324/576 (56%), Positives = 420/576 (72%), Gaps = 8/576 (1%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TI++ GFP+SV+   VK F+E YTG+GTV+A+K+R    KG   RAFA++QFTTAN 
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLR--HGKGRVPRAFAIIQFTTANS 58

Query: 1525 AASLVNLS------LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRV 1364
            A S+++ +      L YGT  L+  + E DIV +PR  + SL+ + L FGCQ+SK +F V
Sbjct: 59   ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSV 118

Query: 1363 LWKSVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLA 1184
            LWK    +VNFG G+RK+ FL +H  V+YKLE+SY++IW I+L  P+N+  ++LLIQ+L 
Sbjct: 119  LWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLG 178

Query: 1183 APKIYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCEL 1004
            AP+++E    +       P+ ++FKDA D+QW+RAIDFT    IGQSS ICLELP   +L
Sbjct: 179  APRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQL 238

Query: 1003 PPQIRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGC 824
            P   R+NF YY+E E  + ++TG  FS +  LVPIV PP G+K+ YDIL +VN LVQ+ C
Sbjct: 239  P-NFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHAC 297

Query: 823  LAGPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPN 644
            LAGP LD  F+  V+P+  P  ++E+ALEK+Y+  E CYEP KWL +QY  Y +SK+ P 
Sbjct: 298  LAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPR 357

Query: 643  PPVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKL 464
             P ISL  GLVY+RRVQITP KVYFC PE+ VSNRVLRH+   ++NF+RVSFVDEE +KL
Sbjct: 358  SPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKL 417

Query: 463  RSTDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFA- 287
             STDLS R+ +     K T IY RILS L+NGI +GDKKF+ LAFSSSQLR+NS WMFA 
Sbjct: 418  FSTDLSSRSQN-----KKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAP 472

Query: 286  SKDGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDI-GIERN 110
            ++ G TAA IRKWMG+F +IRNVAKYAARLGQSF SS ETL+V+ +EVE+IPD+  +  +
Sbjct: 473  TETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYD 532

Query: 109  GMKYIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            G +Y+FSDGIGKIS  FAQKVAKKCG +  TPSAFQ
Sbjct: 533  GNEYVFSDGIGKISLEFAQKVAKKCGYD-CTPSAFQ 567


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  624 bits (1608), Expect = e-176
 Identities = 334/570 (58%), Positives = 409/570 (71%), Gaps = 2/570 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQV G PS+VSA  +KEFLE YTG+GT+ AL+I+  K  G+     A VQFT+   
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPK-SGVSM-THAKVQFTSLRL 58

Query: 1525 AASLVNLS--LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWKS 1352
            A  +++L+  L YG   L+  + + DI+ KPR  + S++ I LHFG Q+S E+F VLWK+
Sbjct: 59   AELIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKA 118

Query: 1351 VGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPKI 1172
            +   V FGFGLRK  F L+H   EYKLE+S ++IW IQLR P+ QN KFLLIQ+L AP+I
Sbjct: 119  INVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQI 178

Query: 1171 YEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQI 992
            YEK   +L          YFK+  DDQWVR IDFT    IGQSS +CLELP   +LP   
Sbjct: 179  YEKDVSALS---------YFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLP-NF 228

Query: 991  RDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAGP 812
             +NF  YKE++  F +E+G+SFS +L LVPIVGPP G  LP+ IL ++N LVQNGCL+GP
Sbjct: 229  CENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGP 288

Query: 811  ILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPPVI 632
             LD +FF  V+PQ    +++EHALEKLY+L ECCYEPV+WL EQY  Y  SK     P I
Sbjct: 289  TLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSPAI 347

Query: 631  SLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRSTD 452
            SL  GLVY+RRVQITP KVYFC PEV VSNRVLR+Y   ++NF+RVSF+DE  EK+ ST 
Sbjct: 348  SLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTV 407

Query: 451  LSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKDGL 272
            +SPR S++G   + T +Y+RILS L+NGI IGDKKFD LA SSSQLRDNSAWMFAS+ GL
Sbjct: 408  ISPRMSNEG---RRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGL 464

Query: 271  TAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKYIF 92
            TAA IR  MGDF +IRNVAKYAARLGQSFSSSKETL V   E+E+IPDI   R+G  Y+F
Sbjct: 465  TAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVF 524

Query: 91   SDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            SDGIGKIS   A +VA KCG +  TPSAFQ
Sbjct: 525  SDGIGKISAELAHRVAIKCGCKNSTPSAFQ 554


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  621 bits (1601), Expect = e-175
 Identities = 324/571 (56%), Positives = 402/571 (70%), Gaps = 3/571 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MGRTIQV GFP  V+AE+VK+FLENYTG+GTV AL+++  KV    RRA+A VQFT    
Sbjct: 1    MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVG---RRAYARVQFTNIRC 57

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A ++++L+   L+YGT  L+ ++++ DIV  PR     +E + L+FGCQ+S  KF VLWK
Sbjct: 58   AETIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWK 117

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
                 V FG G++K+ F L H  VEYK+++SY++IW I L     Q+ K L+IQ+  AP+
Sbjct: 118  GESVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPR 177

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            IY+K   S        +  YF    DDQWVR  DFT    IGQSS +CL+LP    LP  
Sbjct: 178  IYKKLSGS--------VYSYFMVTQDDQWVRTTDFTQSL-IGQSSSLCLQLPYGMRLP-N 227

Query: 994  IRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAG 815
             RDNF YYKE E PF +ETG  FSH+ DLVPIV PP  IKLPY +L +V  LVQ GCL G
Sbjct: 228  FRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKVCSLVQTGCLPG 287

Query: 814  PILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPPV 635
            P LD SFF  VNP      Y+EHALEKLY+L ECCY P  WL+EQY +YR SK  P  P 
Sbjct: 288  PKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERYRTSKEHPKSPA 347

Query: 634  ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRST 455
            I L DGLVY+ RVQ+TP++VYF  PEV VSNRVLRHY + ++NF+RVSFVDEE +K+ ST
Sbjct: 348  ICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSFVDEEWDKMYST 407

Query: 454  DLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKDG 275
            DLSPR ++ G++ K T +Y+R++S LR+G+ IGD+KFD LAFSSSQLRDNS WMFA  DG
Sbjct: 408  DLSPRVAA-GDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDNSLWMFAPTDG 466

Query: 274  LTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKYI 95
            L A  IR+WMGDF  IRNVAKYAARLGQSF SS ETL+V+  E+E I D+   +NG +Y 
Sbjct: 467  LNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDV---KNGTEYT 523

Query: 94   FSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            FSDGIGKIS  FA++VA KCG+   TPSAFQ
Sbjct: 524  FSDGIGKISEDFARQVAAKCGVRSSTPSAFQ 554


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  610 bits (1573), Expect = e-172
 Identities = 330/573 (57%), Positives = 410/573 (71%), Gaps = 5/573 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TI +SGFPS V+A+ VK FLE +TG GTVYA+K+RP K  G   R +A+VQFT+A  
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTSATQ 58

Query: 1525 AA---SLVNLSLHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A    SL N  L YG+  L+    E DIV KPR  M +LE + L FGCQVS EKFRVLW+
Sbjct: 59   AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
                +V FG G+RK+ F L +  VEY+LE+SY+ IW IQL CP++Q+ K+LLIQ+  AP+
Sbjct: 119  GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPR 178

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            IY+K   + GQ    P++++FK+A DDQWVR  DFT+   IGQSS +CL+LP   +LPP 
Sbjct: 179  IYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP- 237

Query: 994  IRDNFPYYKEDEGPF-CMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLA 818
             + NF YY+E E  F  ++  ++FS   DL PIV   S + LPY IL ++N LVQ GC+ 
Sbjct: 238  FKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIP 296

Query: 817  GPILDASFFASVNPQLTPS-AYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNP 641
             P+LDASF+  V   +T    +VEHALEKL+HL EC Y+P  +L EQY KY  S+H PN 
Sbjct: 297  WPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNS 354

Query: 640  PVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLR 461
            PVISL DGLVY+RRVQITP KV+FC PEV VSNRVLRH+   ++NF+RVSFVDEE +K+R
Sbjct: 355  PVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMR 414

Query: 460  STDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASK 281
            STDL PR SSK ED K T IY+RILS L+NGI IGDK F  LAFSSSQLRDNS WMFAS 
Sbjct: 415  STDLLPRMSSKSEDGK-TDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASG 473

Query: 280  DGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMK 101
              + AA IR WMGDF+ I+N AKYAARLGQSF SS E L+V   E E+IPDI +++  +K
Sbjct: 474  PDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIK 533

Query: 100  YIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            Y+FSDGIGKIS  FA++VA KCG +   PSAFQ
Sbjct: 534  YVFSDGIGKISSKFAKEVAAKCGFQA-VPSAFQ 565


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  610 bits (1572), Expect = e-172
 Identities = 327/572 (57%), Positives = 399/572 (69%), Gaps = 5/572 (0%)
 Frame = -1

Query: 1702 GRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANGA 1523
            GRT+QVSGFP    AE VK+FLE+ TG GTVY LKIR  K K    R FA+VQFTT+  A
Sbjct: 75   GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKP-NSRVFAIVQFTTSKSA 133

Query: 1522 ASLVNL-----SLHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLW 1358
              + +L     SL++G   + V   ENDIV  PR +   LE I L+FG Q+S+E F +LW
Sbjct: 134  EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILW 193

Query: 1357 KSVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAP 1178
             +    V FGFGL+K+ F L H GV+YKL++ Y++IW IQLR P  +  ++L++Q+  AP
Sbjct: 194  SNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQMQGAP 253

Query: 1177 KIYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPP 998
            +I++KP          P+ +Y+KD  D+QWVR+IDFT    IGQSS +CL LP    + P
Sbjct: 254  RIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLCLALPNGTRI-P 312

Query: 997  QIRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLA 818
             IR+NF YYKE  G F ++TGSSFSHSL LVPIV PP  IKLPY IL RVN LVQNG L 
Sbjct: 313  NIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRVNSLVQNGFLV 372

Query: 817  GPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPP 638
            GP LD  F+  +N    PS +VE +LE +  L  CC EP KWL+EQY KYR     P+P 
Sbjct: 373  GPTLDTEFYNLLNG--LPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKYRNLPRRPSPA 430

Query: 637  VISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRS 458
             ISL  GLVY+ RVQ+TPSKVYF  PEV VSNRVLR + N ++NF+R+SF+DE+   +RS
Sbjct: 431  AISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISFIDEDFGSIRS 490

Query: 457  TDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKD 278
            TDLS R +S G + KHT +Y R+LSTL+NGI IGDKKF+ LAFSSSQLRDNSAWMF+  D
Sbjct: 491  TDLSKRMAS-GAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDNSAWMFSPID 549

Query: 277  GLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKY 98
            G+TAA IR+WMGDF  IRNVAK AAR+GQSF SS ETL V  EEVE I DI   +NG KY
Sbjct: 550  GITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDI---KNG-KY 605

Query: 97   IFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            +FSDGIGKIS  FA+KVA KCG    TPSAFQ
Sbjct: 606  VFSDGIGKISLEFAKKVALKCGCSEKTPSAFQ 637


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
            gi|557094740|gb|ESQ35322.1| hypothetical protein
            EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  601 bits (1549), Expect = e-169
 Identities = 306/573 (53%), Positives = 404/573 (70%), Gaps = 5/573 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TI+V GFP  VS E VK FLE  TG GTVYA+K+R  K  G   R +A+VQFT    
Sbjct: 1    MGKTIRVFGFPGGVSGEEVKNFLERETGSGTVYAIKVRQPKKGG--PRVYAIVQFTNERH 58

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A  ++  +   L+YG   L+  + E DIV KPR S+  +  + ++FGCQV+ +K  VLW 
Sbjct: 59   ARWIITRAEEGLYYGRSYLKASEVEQDIVPKPRASLHKISDLKIYFGCQVTPKKLSVLWS 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
            +    V+FG G+RKL F ++    +Y+LE+ Y++IW I L  PQ +  KFL+IQV+ APK
Sbjct: 119  AQNVCVSFGTGMRKLHFSISWYEKDYRLELPYENIWRIDLYSPQGRASKFLVIQVIGAPK 178

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            I+EK    +    G  ++D+F D  D+QW+R  DFT+  CIGQSS  CLELP+   +P  
Sbjct: 179  IFEKEDQPVNLLFG--MLDFFSDGSDEQWIRTTDFTSSSCIGQSSSFCLELPRQLNVP-D 235

Query: 994  IRDNFPYYKEDE-GPFCMETGSSFSH-SLDLVPIVGPPSGIKLPYDILCRVNILVQNGCL 821
             R+NF  Y E E G F +E+GSS+S  + +LVP+V PP G  LP++IL +VN LVQ+ C+
Sbjct: 236  FRENFANYAEHEAGTFLIESGSSYSSDATNLVPVVDPPPGFDLPFEILFKVNALVQSACI 295

Query: 820  AGPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNP 641
             GP+LD  F+  ++PQ    A ++H+LEKL++L ECCYEP +WL E Y ++   +  P  
Sbjct: 296  PGPVLDLDFYQLLDPQKHERALIDHSLEKLFYLKECCYEPARWLREGYKEWTTKEKLPES 355

Query: 640  PVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLR 461
            P+ISL DGLVY+ RVQ+TP+++YF  PEV VSNRVLRHY N + NF+R+SFVDE+ EK+R
Sbjct: 356  PMISLDDGLVYMHRVQVTPTRIYFQGPEVNVSNRVLRHYSNYINNFLRISFVDEDLEKIR 415

Query: 460  STDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASK 281
            S DLSPR+++    ++ T +Y RI S LR+GI IGDKKF+ LAFSSSQLR+NSAWMFA  
Sbjct: 416  SMDLSPRSTT----QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471

Query: 280  DGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMK 101
            DGL+A  IR WMGDF+ IRNVAKYAARLGQSFSSS+ETL V  +E+EVIPD+ I   G +
Sbjct: 472  DGLSAEIIRAWMGDFEHIRNVAKYAARLGQSFSSSRETLNVRTDEIEVIPDVEITYLGTR 531

Query: 100  YIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            Y+FSDGIGKIS  FA++VAKKCG+  FTPSAFQ
Sbjct: 532  YVFSDGIGKISSEFARRVAKKCGLTEFTPSAFQ 564


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  600 bits (1547), Expect = e-169
 Identities = 317/571 (55%), Positives = 405/571 (70%), Gaps = 3/571 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQ+ GFPS  +AE +KEFLE +TG+G+V+ALK+RP K  G   R +A++QF + + 
Sbjct: 1    MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGG---RFYAIIQFQSISQ 57

Query: 1525 AA---SLVNLSLHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A    SL N  L YG   L    A +DIV KPR  + SL  + LH GCQV+K+KF VLW 
Sbjct: 58   AEKIISLANARLWYGRSYLNARPA-HDIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWG 116

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
            +    V+FGFG+R L+F L +    Y+L++SY++IW I+L   + ++ K+L+IQ+   P+
Sbjct: 117  TAEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPR 176

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            IY++  CS G  NGY  ++YF+D   D WVR  DFT   CIGQSS +CL L    ELP  
Sbjct: 177  IYQQEVCSSGG-NGYEDMNYFRDP--DDWVRTTDFTPGSCIGQSSSLCLVLTSDGELP-D 232

Query: 994  IRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAG 815
              +NF YYK+ +G F +E GS+FS + DLVPIVG P+GI LPYDIL ++N+LVQ GCL+G
Sbjct: 233  FEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSG 292

Query: 814  PILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPPV 635
            P LD +F+  V+P+      +E AL+KL +L E CYEP  WL E+Y KY  SK  P P +
Sbjct: 293  PTLDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPAL 352

Query: 634  ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRST 455
            ISL  GLVY+RRVQITPSKVYF  PEV VSNR+LR Y + ++NF+RVSFVDEE EKL ST
Sbjct: 353  ISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYST 412

Query: 454  DLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKDG 275
            DLSPRTS+     + T IY R+LS LR+GI +G KKF+ LAFSSSQLR+NS WMFA  D 
Sbjct: 413  DLSPRTST-----RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDE 467

Query: 274  LTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMKYI 95
             +A  IR  MGDF++IRNVAKYAARLGQSF SS ETL+V   E+EVIPD+ +   G+KY+
Sbjct: 468  DSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYV 527

Query: 94   FSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            FSDGIGKIS  FA++VAKKCG + FTPSAFQ
Sbjct: 528  FSDGIGKISADFAERVAKKCGYKAFTPSAFQ 558


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  597 bits (1540), Expect = e-168
 Identities = 309/574 (53%), Positives = 400/574 (69%), Gaps = 6/574 (1%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQV GFP+ VSAE VK+FLE  TG GTVYA+K+R  K  G   R FA+VQFT    
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNERY 58

Query: 1525 AASLVNLS----LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLW 1358
            A  ++  +    L+YG   L  ++ + DIV KPR S+ ++  + ++FGCQVS +KF  LW
Sbjct: 59   ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLW 118

Query: 1357 KSVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAP 1178
             +    V+FG G+RKL F  +    +Y+LE+SY++IW I L  PQ ++ KFL+IQV+ AP
Sbjct: 119  SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 178

Query: 1177 KIYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPP 998
            KI+EK    +    G  ++D++ D  D+QW+R  DFT+  CIGQS+  CLELP    +P 
Sbjct: 179  KIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP- 235

Query: 997  QIRDNFPYYKEDEG-PFCMETGSSFSHSLD-LVPIVGPPSGIKLPYDILCRVNILVQNGC 824
              R+NF  Y E    PF +E+GSS+S + + LVP+V PP G  LP++IL ++N LVQN C
Sbjct: 236  DFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQNAC 295

Query: 823  LAGPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPN 644
            L GP LD   +  +NP+    A ++H LEKL+HL E CYEP +WL +QY +       P 
Sbjct: 296  LPGPALDLDVYQLLNPKKYNRALIDHCLEKLFHLGESCYEPARWLRKQYKELSSKGKLPL 355

Query: 643  PPVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKL 464
             P ISL DGLVY+ RVQ+TP++VYF  PEV VSNRVLRHY   + NF+RVSFVDE+ EK+
Sbjct: 356  SPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKV 415

Query: 463  RSTDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFAS 284
            RS DLSPR+S++    + T +Y RI S LR+GI IGDKKF+ LAFSSSQLR+NSAWMFA 
Sbjct: 416  RSMDLSPRSSTQ----RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 471

Query: 283  KDGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGM 104
             DGLT+A IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V  +E+EVIPD+ I   G 
Sbjct: 472  IDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 531

Query: 103  KYIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            +Y+FSDGIGKIS  FA++VAKKCG+  F+PSAFQ
Sbjct: 532  RYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQ 565


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  597 bits (1539), Expect = e-168
 Identities = 308/573 (53%), Positives = 400/573 (69%), Gaps = 5/573 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQV GFP+ VSAE VK+FLE  TG GTVYA+K+R  K  G   R +A+VQFT+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
               ++  +   L+YG   L+ ++ E DIV KPR S+ ++  + + FGCQVS +KF  LW 
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
            +    V+FG G+RKL F  +    +Y+LE+SY++IW I L  PQ ++ KFL+IQV+ APK
Sbjct: 119  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            I+EK    +    G  I+D++ D  D+QW+R  DFT+  CIGQS+  CLELP    +P  
Sbjct: 179  IFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP-D 235

Query: 994  IRDNFPYYKEDEGP-FCMETGSSFSHSLD-LVPIVGPPSGIKLPYDILCRVNILVQNGCL 821
             R+NF  Y E     F +E+GSS+S + + LVP+V PP G  LP++IL ++N LVQN CL
Sbjct: 236  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 295

Query: 820  AGPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNP 641
            +GP LD  F+  +N +    A ++H LEKL+HL ECCYEP  WL ++Y K+      P  
Sbjct: 296  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 355

Query: 640  PVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLR 461
            P ISL DGLVY+ RVQ+TP++VYF  PEV VSNRVLRHY   + NF+RVSFVDE+ EK+R
Sbjct: 356  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 415

Query: 460  STDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASK 281
            S DLSPR+S+    ++ T +Y RI S LR+GI IGDKKF+ LAFSSSQLR+NSAWMFA  
Sbjct: 416  SMDLSPRSST----QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471

Query: 280  DGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMK 101
            D +TAA IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V  +E+EVIPD+ I   G +
Sbjct: 472  DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531

Query: 100  YIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            Y+FSDGIGKIS  FA+KVA+KCG+  F+PSAFQ
Sbjct: 532  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQ 564


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  597 bits (1539), Expect = e-168
 Identities = 308/573 (53%), Positives = 400/573 (69%), Gaps = 5/573 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQV GFP+ VSAE VK+FLE  TG GTVYA+K+R  K  G   R +A+VQFT+   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
               ++  +   L+YG   L+ ++ E DIV KPR S+ ++  + + FGCQVS +KF  LW 
Sbjct: 59   TRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
            +    V+FG G+RKL F  +    +Y+LE+SY++IW I L  PQ ++ KFL+IQV+ APK
Sbjct: 119  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPK 178

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            I+EK    +    G  I+D++ D  D+QW+R  DFT+  CIGQS+  CLELP    +P  
Sbjct: 179  IFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVP-D 235

Query: 994  IRDNFPYYKEDEGP-FCMETGSSFSHSLD-LVPIVGPPSGIKLPYDILCRVNILVQNGCL 821
             R+NF  Y E     F +E+GSS+S + + LVP+V PP G  LP++IL ++N LVQN CL
Sbjct: 236  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 295

Query: 820  AGPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNP 641
            +GP LD  F+  +N +    A ++H LEKL+HL ECCYEP  WL ++Y K+      P  
Sbjct: 296  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 355

Query: 640  PVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLR 461
            P ISL DGLVY+ RVQ+TP++VYF  PEV VSNRVLRHY   + NF+RVSFVDE+ EK+R
Sbjct: 356  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 415

Query: 460  STDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASK 281
            S DLSPR+S+    ++ T +Y RI S LR+GI IGDKKF+ LAFSSSQLR+NSAWMFA  
Sbjct: 416  SMDLSPRSST----QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPI 471

Query: 280  DGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMK 101
            D +TAA IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V  +E+EVIPD+ I   G +
Sbjct: 472  DRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTR 531

Query: 100  YIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            Y+FSDGIGKIS  FA+KVA+KCG+  F+PSAFQ
Sbjct: 532  YVFSDGIGKISAEFARKVARKCGLTEFSPSAFQ 564


>ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase
            1b [Cucumis sativus]
          Length = 1115

 Score =  595 bits (1534), Expect = e-167
 Identities = 309/572 (54%), Positives = 408/572 (71%), Gaps = 4/572 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQ+ GFPS V  E VK F+E  TG GT+ A+  +  + KG  RR +A++QFT   G
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTK--RSKGGGRRVYAIIQFTDEEG 58

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A S+++ +   L YGT  L+  + ++DI+  P     + + + LH GCQ+SKE F VLW 
Sbjct: 59   AKSIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWT 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
                 V+FGF LRKL F +++  V+Y L + Y++IW ++L  P  Q+  +LLIQ+  AP+
Sbjct: 119  ESNVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPR 178

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            IYE+   S G     P ++ F   ID QW RA DFT    IGQS+ +CLE+P   +LP  
Sbjct: 179  IYERDARSFGLITEDPFLN-FSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLP-N 236

Query: 994  IRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGCLAG 815
              D F Y+KE +G F + +GS++S +++LVP+V PP  I LPY IL ++N+LVQ GCL G
Sbjct: 237  FHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPG 296

Query: 814  PILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNPPV 635
            P LD SF+  V+ Q+  +A ++HAL+KL HL ECCY P KWL+E+Y KY + K+ P PP+
Sbjct: 297  PALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPI 356

Query: 634  ISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLRST 455
            ++L +GLVY+ RVQ+TP KVYFC PEV +SNRVLR Y + ++NF+RVSFVDEE  K+ ST
Sbjct: 357  LTLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYST 416

Query: 454  DLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASKDG 275
            +LSPR SS  ED K T I+KRILS LR+GITIGDKKF+ LA+SSSQLR+N+AWMFA K+ 
Sbjct: 417  ELSPRASSSLEDGK-TKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNE 475

Query: 274  LTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIER-NGMKY 98
            LTAA IR+WMGDF  IRNVAKYAARLGQSF SS ETL+V+  EV+VIPDI +E  +G+ Y
Sbjct: 476  LTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNY 535

Query: 97   IFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            +FSDGIGKI+ +FA+KVAKKCGI R TPSAFQ
Sbjct: 536  VFSDGIGKIAASFARKVAKKCGI-RHTPSAFQ 566


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  595 bits (1533), Expect = e-167
 Identities = 308/573 (53%), Positives = 399/573 (69%), Gaps = 5/573 (0%)
 Frame = -1

Query: 1705 MGRTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANG 1526
            MG+TIQV GFP  V+ + VK FLE  TG GTVYA+K+R  K  G   R FA+VQFT+   
Sbjct: 1    MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGG--PRVFAIVQFTSERH 58

Query: 1525 AASLVNLS---LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLWK 1355
            A  ++ ++   L+YG   L+ ++ E DIV KPR S+ S+  + ++FGCQVS +K   LW 
Sbjct: 59   ARLIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWS 118

Query: 1354 SVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAPK 1175
            +    V+FG G+RKL F ++    +Y+LE+SY++IW I L  PQ  + KFL+IQV+ APK
Sbjct: 119  AHNVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPK 178

Query: 1174 IYEKPRCSLGQTNGYPIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCELPPQ 995
            I+EK    +    G  ++D++ D  D+QW+R  DFT+  CIGQS+  CLELP    +P  
Sbjct: 179  IFEKEDQPVNFLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVP-D 235

Query: 994  IRDNFPYYKEDEGP-FCMETGSSFSHSLD-LVPIVGPPSGIKLPYDILCRVNILVQNGCL 821
             R+NF  Y E     F +++GSS+S + + LVP+V PP G  LP++IL +VN LVQN CL
Sbjct: 236  FRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDLPFEILFKVNTLVQNACL 295

Query: 820  AGPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPNP 641
             GP LD  F+  +NP+    A ++H+LEKL+HL ECCYEP +WL E+Y K   SK  P  
Sbjct: 296  PGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARWLREEYKKLNSSKKLPLS 355

Query: 640  PVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKLR 461
            P ISL DGLVYI RV +TP++VYF  PEV VSNRVLRHY   + NF+R+SFVDE+ EK+ 
Sbjct: 356  PTISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYINNFLRISFVDEDLEKIH 415

Query: 460  STDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFASK 281
            S DLSPR+S+    ++ T +Y RI S LR+GI IGDKKF+ LAFSSSQLR+NSAWMFA +
Sbjct: 416  SMDLSPRSST----QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPR 471

Query: 280  DGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNGMK 101
            D LTAA IR WMGDF  IRNVAKYAARLGQSFSSS+ETL V  +E+EVIPD+       +
Sbjct: 472  DRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEAMYLDTR 531

Query: 100  YIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            Y+FSDGIGKIS  FA+KVAKKCG+  F+PSAFQ
Sbjct: 532  YVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQ 564


>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
            arietinum]
          Length = 1100

 Score =  589 bits (1518), Expect = e-165
 Identities = 304/575 (52%), Positives = 408/575 (70%), Gaps = 9/575 (1%)
 Frame = -1

Query: 1699 RTIQVSGFPSSVSAEVVKEFLENYTGKGTVYALKIRPCKVKGLQRRAFAVVQFTTANGAA 1520
            +TI++ GFP+SV    VK F+E +TG+G+V A+KIR  K +   +RA+A++QF TAN A 
Sbjct: 5    KTIELYGFPTSVVVPDVKRFVERFTGEGSVVAIKIREGKAR--VQRAYAIIQFNTANQAT 62

Query: 1519 SLVNLS------LHYGTYPLRVWKAENDIVLKPRGSMLSLEVIALHFGCQVSKEKFRVLW 1358
             +++L       L YG   L++ +   DIV  PR  + SL+ + L+FGCQ+SKE+F +LW
Sbjct: 63   HMLSLHNRSSTMLRYGNSYLKIREMVRDIVPNPRTYLESLDDVTLYFGCQISKERFSILW 122

Query: 1357 KSVGAVVNFGFGLRKLEFLLTHCGVEYKLEISYKSIWTIQLRCPQNQNRKFLLIQVLAAP 1178
            +     V+   G+RK  F + H   ++K ++SY++IW I+   P  +  K+LLIQ++ AP
Sbjct: 123  RKRDVSVDLSAGMRKWRFCMCHDNKKFKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAP 182

Query: 1177 KIYEKPRCSLGQTNGY--PIVDYFKDAIDDQWVRAIDFTTLYCIGQSSGICLELPQSCEL 1004
            +I+E    +   TN Y  P+ +YFK++ DDQW+RA+DFT   CIGQSS ICLELP   + 
Sbjct: 183  RIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSAICLELPCDRDF 242

Query: 1003 PPQIRDNFPYYKEDEGPFCMETGSSFSHSLDLVPIVGPPSGIKLPYDILCRVNILVQNGC 824
            P  IR+ F +Y+E+EG + +E+GS FSH+LD+VPIV PP GI +P+DIL +VN LVQ+GC
Sbjct: 243  P-NIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPPQGIYIPFDILFKVNSLVQHGC 301

Query: 823  LAGPILDASFFASVNPQLTPSAYVEHALEKLYHLNECCYEPVKWLEEQYTKYRQSKHFPN 644
            L+G  LD +F+  V+P      ++EHALEK+Y+  + CYEP +WL++QY  Y  S +   
Sbjct: 302  LSGSELDNAFYCLVDPLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYRMYLNSNYPLQ 361

Query: 643  PPVISLGDGLVYIRRVQITPSKVYFCRPEVIVSNRVLRHYHNAVENFIRVSFVDEEGEKL 464
             P ISL +GLVY+RRVQITP KVYFC PE+ VSNRV+RH+H  ++NF+RVSFVDEE +KL
Sbjct: 362  SPSISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVVRHFHEHIDNFLRVSFVDEELDKL 421

Query: 463  RSTDLSPRTSSKGEDRKHTAIYKRILSTLRNGITIGDKKFDLLAFSSSQLRDNSAWMFA- 287
             STDLS R S        T +Y RILS LRNGI IGDKKF+ LAFSSSQLR+NS WMFA 
Sbjct: 422  YSTDLSSRISV----GVRTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAP 477

Query: 286  SKDGLTAACIRKWMGDFQEIRNVAKYAARLGQSFSSSKETLTVNWEEVEVIPDIGIERNG 107
            +  GLTA  IR WMGDF +IRNVAKYAARLGQSF SS ETL+VN  E+E+IPD  ++ + 
Sbjct: 478  TATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEIIPDAQVKHDT 537

Query: 106  MKYIFSDGIGKISRTFAQKVAKKCGIERFTPSAFQ 2
            ++Y+FSDGIGKIS  FA++VAKKCG +  TPSAFQ
Sbjct: 538  IEYVFSDGIGKISLEFARRVAKKCGYDS-TPSAFQ 571