BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00010029
         (1154 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30093.3| unnamed protein product [Vitis vinifera]              229   2e-57
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I...   229   2e-57
ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Popu...   228   5e-57
ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, I...   224   5e-56
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I...   223   1e-55
ref|XP_007162116.1| hypothetical protein PHAVU_001G125200g [Phas...   222   3e-55
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub...   219   1e-54
ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, I...   219   2e-54
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin...   219   2e-54
ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citr...   218   3e-54
ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V sub...   218   4e-54
ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, I...   217   7e-54
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri...   215   3e-53
ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, I...   214   6e-53
emb|CBI35146.3| unnamed protein product [Vitis vinifera]              214   6e-53
gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subun...   212   2e-52
ref|XP_007028544.1| Eukaryotic rpb5 RNA polymerase subunit famil...   211   5e-52
ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ...   211   6e-52
emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]               209   2e-51
ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group] g...   209   2e-51

>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
          Length = 330

 Score =  229 bits (583), Expect = 2e-57
 Identities = 116/217 (53%), Positives = 154/217 (70%)
 Frame = -2

Query: 1144 EMDSSKCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPK 965
            + +  +C+  + VDEG +ES RYYL+R T LEMLRDRGY +P  D+ ++LQ FR  +  K
Sbjct: 115  DFEVKRCLSSF-VDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQK 173

Query: 964  PDLERLRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTT 785
            PD +RLRIS  L SDPSK ILV+FCG D +K++ +R++ TQI    SL ++ILV+Q   T
Sbjct: 174  PDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHIT 233

Query: 784  PQARQALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPR 605
             QA +A+   S  +VE FQ+TDLLVN+TKHVL PKH +L          KYS+ +KQ+PR
Sbjct: 234  SQALKAVDLFS-FQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPR 292

Query: 604  MLETDAVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            ML+ DA+ARYYGLEKGQV+K+   G++ G HVTYRCV
Sbjct: 293  MLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 329


>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Vitis vinifera]
          Length = 229

 Score =  229 bits (583), Expect = 2e-57
 Identities = 116/217 (53%), Positives = 154/217 (70%)
 Frame = -2

Query: 1144 EMDSSKCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPK 965
            + +  +C+  + VDEG +ES RYYL+R T LEMLRDRGY +P  D+ ++LQ FR  +  K
Sbjct: 14   DFEVKRCLSSF-VDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQK 72

Query: 964  PDLERLRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTT 785
            PD +RLRIS  L SDPSK ILV+FCG D +K++ +R++ TQI    SL ++ILV+Q   T
Sbjct: 73   PDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHIT 132

Query: 784  PQARQALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPR 605
             QA +A+   S  +VE FQ+TDLLVN+TKHVL PKH +L          KYS+ +KQ+PR
Sbjct: 133  SQALKAVDLFS-FQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPR 191

Query: 604  MLETDAVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            ML+ DA+ARYYGLEKGQV+K+   G++ G HVTYRCV
Sbjct: 192  MLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 228


>ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
            gi|550320761|gb|EEF05018.2| hypothetical protein
            POPTR_0016s03800g [Populus trichocarpa]
          Length = 243

 Score =  228 bits (580), Expect = 5e-57
 Identities = 111/212 (52%), Positives = 153/212 (72%)
 Frame = -2

Query: 1129 KCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLER 950
            +C+  + VDEGS ES RYYLSR T LEML+DRGY VP S++ ++LQ FR  +G  PD+E 
Sbjct: 33   RCLSSF-VDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIEL 91

Query: 949  LRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQ 770
            L+ S    SDPSK +LV+FCG+  +K+ ++R +  QI +  SL  +ILV+Q   T QA +
Sbjct: 92   LKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMK 151

Query: 769  ALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETD 590
            AL  L + K+E+FQ+TDLLVN+TKH+L PKH++L          KYS+ +KQ+PR+L+ D
Sbjct: 152  AL-DLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKKD 210

Query: 589  AVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            A++RYYGLE+GQV+K+T  GD+ G HVTYRCV
Sbjct: 211  AISRYYGLERGQVVKVTYDGDITGSHVTYRCV 242


>ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Cicer arietinum]
          Length = 244

 Score =  224 bits (571), Expect = 5e-56
 Identities = 112/220 (50%), Positives = 158/220 (71%)
 Frame = -2

Query: 1153 EAKEMDSSKCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSF 974
            + +  +  KC+    +D+GSVES RYYLSR TTLEML+DRGY +P S++ L+L +FR + 
Sbjct: 26   QVQSQEQGKCLIT-KIDDGSVESHRYYLSRRTTLEMLKDRGYSIPPSEIQLSLHEFRQTH 84

Query: 973  GPKPDLERLRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQG 794
            G  PD++RLR +    ++PSK ILV+F G   +K++VVRN+  QI    +L  +IL++Q 
Sbjct: 85   GHSPDVDRLRFTATHTTNPSKRILVIFSGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQS 144

Query: 793  KTTPQARQALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQ 614
            + T QA +A+  LS  KVE+FQ+TDLLVN+TKHVL PKH++L          KY++ +KQ
Sbjct: 145  QITSQALKAVNLLS-FKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKKYNIQEKQ 203

Query: 613  IPRMLETDAVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            +PRML+TDA+ARYYGLE+GQV+K+T  G++   HVTYRCV
Sbjct: 204  LPRMLQTDAIARYYGLERGQVVKVTYTGEITQMHVTYRCV 243


>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Cucumis sativus]
            gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
            RNA polymerases I, II, and III subunit RPABC1-like
            [Cucumis sativus]
          Length = 227

 Score =  223 bits (568), Expect = 1e-55
 Identities = 108/220 (49%), Positives = 154/220 (70%)
 Frame = -2

Query: 1153 EAKEMDSSKCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSF 974
            E   ++   C+  + +D+G+ ES RY+LSR T +EML+DRGY +   ++  +LQQFR++F
Sbjct: 9    EPNPVEFGTCLSSY-IDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETF 67

Query: 973  GPKPDLERLRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQG 794
            G  PD++RL++S    SDPSK +LVVFCG   +K++ +RN+  QI    SLH +IL++Q 
Sbjct: 68   GQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQN 127

Query: 793  KTTPQARQALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQ 614
            + T QA +A+   S  KVE+FQ+TDLLVN+TKH L P H++L          +YS+ +KQ
Sbjct: 128  QITNQAMKAVELFS-FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQ 186

Query: 613  IPRMLETDAVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            +PRML TDA+ARYYGLEKGQV+K+T  GD+   H+TYRCV
Sbjct: 187  LPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCV 226


>ref|XP_007162116.1| hypothetical protein PHAVU_001G125200g [Phaseolus vulgaris]
            gi|561035580|gb|ESW34110.1| hypothetical protein
            PHAVU_001G125200g [Phaseolus vulgaris]
          Length = 242

 Score =  222 bits (565), Expect = 3e-55
 Identities = 110/220 (50%), Positives = 155/220 (70%)
 Frame = -2

Query: 1153 EAKEMDSSKCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSF 974
            E +E +  K      +D+G+VES RYYLSR TTLEML+DRGY +P +++ L+L QFR   
Sbjct: 23   EQEETEQVKGCLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLSLSQFRHMH 82

Query: 973  GPKPDLERLRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQG 794
            G  PD +RLR+SL   ++PSK ILV+FCG   +K++ +RN+  QI    +L  +IL+++ 
Sbjct: 83   GHSPDPDRLRLSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLSGLILIVEN 142

Query: 793  KTTPQARQALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQ 614
              T QA +A+   S  KVE+FQ+TDLLVN+TKHVL PKH++L          K+++ +KQ
Sbjct: 143  HVTSQALKAVGLFS-FKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQ 201

Query: 613  IPRMLETDAVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            +PRML+TDA+ARYYGLE+GQV+K+T  G++   HVTYRCV
Sbjct: 202  LPRMLQTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCV 241


>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
            tuberosum]
          Length = 227

 Score =  219 bits (559), Expect = 1e-54
 Identities = 107/205 (52%), Positives = 153/205 (74%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            VD+G+VES RY+L+R T LEML+DRG+ +P+S++  TLQ+FR+ +G  PD+ERLR+S   
Sbjct: 23   VDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMH 82

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
             +D +  +LV+FCG + +K++V+R++LTQI    SL R+ILV+Q + T  A +A+   S 
Sbjct: 83   RNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPAMKAVELFS- 141

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
             KVE+FQ+TDLLVN+TKHVL P+HE+L          KY++ +KQ+PRM + DA+ARYYG
Sbjct: 142  FKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYG 201

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
            LEKGQV+K+T   ++I  HVTYRCV
Sbjct: 202  LEKGQVVKVTYSSEIIETHVTYRCV 226


>ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Solanum lycopersicum]
          Length = 227

 Score =  219 bits (558), Expect = 2e-54
 Identities = 107/205 (52%), Positives = 153/205 (74%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            VD+G+VES RY+L+R T LEML+DRG+ +P+S++  TLQ+FR+ +G  PD+ERLR+S   
Sbjct: 23   VDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMH 82

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
             +D +  +LV+FCG + +K++V+R++LTQI    SL R+ILV+Q + T  A +A+   S 
Sbjct: 83   RNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPALKAVELFS- 141

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
             KVE+FQ+TDLLVN+TKHVL P+HE+L          KY++ +KQ+PRM + DA+ARYYG
Sbjct: 142  FKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYG 201

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
            LEKGQV+K+T   ++I  HVTYRCV
Sbjct: 202  LEKGQVVKVTYSSEIIETHVTYRCV 226


>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
            gi|255627335|gb|ACU14012.1| unknown [Glycine max]
          Length = 237

 Score =  219 bits (557), Expect = 2e-54
 Identities = 113/220 (51%), Positives = 152/220 (69%)
 Frame = -2

Query: 1153 EAKEMDSSKCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSF 974
            E +E + +K      VD GSVES RYYLSR TTLEML+DRGY +P  ++ L+L  FRD  
Sbjct: 18   EEEEAEQAKGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIH 77

Query: 973  GPKPDLERLRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQG 794
            G  PD +RLR+SL   ++ SK ILV+FCG   +K++ +RN   QI    +L  +IL+++ 
Sbjct: 78   GQFPDPDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVEN 137

Query: 793  KTTPQARQALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQ 614
              T QA +A+  L   KVE+FQ+TDLLVN+TKHVL PKH++L          KY++ +KQ
Sbjct: 138  HITSQALKAV-NLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQ 196

Query: 613  IPRMLETDAVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            +PRML+TDA+ARYYGLE+GQV+K+T  G+V   HVTYRCV
Sbjct: 197  LPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCV 236


>ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citrus clementina]
            gi|568879109|ref|XP_006492520.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 5A-like isoform X1 [Citrus
            sinensis] gi|557544341|gb|ESR55319.1| hypothetical
            protein CICLE_v10021999mg [Citrus clementina]
          Length = 236

 Score =  218 bits (556), Expect = 3e-54
 Identities = 110/205 (53%), Positives = 153/205 (74%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            VD GS +S RYYLSR T LEML+DRGY V  S+++L++Q FR  +G  PD++RLRIS+  
Sbjct: 32   VDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINLSVQDFRAIYGQDPDVDRLRISISH 91

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
             SDPSK ILVVFCG   +K++V+R++++QI    +L  +IL++Q + T QA +A+  L +
Sbjct: 92   QSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTLTGLILILQNQITSQATKAVG-LFQ 150

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
             KVE+FQ+TDLLVN+TKHVL PKH++L          KYS+ +KQ+PRML+ DA+A+YYG
Sbjct: 151  FKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLKKYSIEEKQLPRMLKKDAIAQYYG 210

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
            LE+GQV+K+T  G++   HVTYRCV
Sbjct: 211  LERGQVVKVTYSGEITESHVTYRCV 235


>ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
            tuberosum]
          Length = 227

 Score =  218 bits (555), Expect = 4e-54
 Identities = 108/220 (49%), Positives = 158/220 (71%)
 Frame = -2

Query: 1153 EAKEMDSSKCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSF 974
            E   ++ S C+  + VD+G+VES RY+L+R T LEML+DRG+ +P+S++  TLQ+FR+ +
Sbjct: 9    EVDVVNVSPCLASF-VDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIDTTLQEFREKY 67

Query: 973  GPKPDLERLRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQG 794
            G +PD ERLRIS    +D +  +LV+FCG +++K++V+R++L+QI    SL R+IL+++ 
Sbjct: 68   GQRPDAERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRSILSQIMNKESLSRLILIIEN 127

Query: 793  KTTPQARQALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQ 614
              T  A + +   S  K E+FQ+TDLLVN+TKHVL PKHE+L          KY++ DKQ
Sbjct: 128  PMTNPAMKVVED-SPFKTEIFQITDLLVNITKHVLKPKHELLTNTEKEQLLKKYNLEDKQ 186

Query: 613  IPRMLETDAVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            +PRM + DA+ARYYGLEKGQV+K+T   ++I  HVTYRCV
Sbjct: 187  LPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHVTYRCV 226


>ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Solanum lycopersicum]
          Length = 227

 Score =  217 bits (553), Expect = 7e-54
 Identities = 107/220 (48%), Positives = 158/220 (71%)
 Frame = -2

Query: 1153 EAKEMDSSKCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSF 974
            E   ++ S C+  + VD+G+VES RY+L+R T LEML+DRG+ +P+S++  TLQ+FR+ +
Sbjct: 9    EVDVVNVSPCLTSF-VDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIETTLQEFREKY 67

Query: 973  GPKPDLERLRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQG 794
            G +PD+ERLRIS    +D +  +LV+FCG +++K++V+RN+L+QI    SL R+IL+++ 
Sbjct: 68   GQRPDVERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRNILSQIMNKESLSRLILIIEN 127

Query: 793  KTTPQARQALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQ 614
              T  A + +   S  K E+FQ+TDLLVN+TKHVL PKHE+L          KY++ +KQ
Sbjct: 128  PMTNPAMKVVED-SPFKTEIFQITDLLVNITKHVLKPKHELLTNAEKEQLLKKYNLEEKQ 186

Query: 613  IPRMLETDAVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            +PRM + DA+ARYYGLEKGQV+K+T   ++I  H TYRCV
Sbjct: 187  LPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHATYRCV 226


>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
            gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
            II, putative [Ricinus communis]
          Length = 238

 Score =  215 bits (547), Expect = 3e-53
 Identities = 110/212 (51%), Positives = 147/212 (69%)
 Frame = -2

Query: 1129 KCMCEWGVDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLER 950
            KC   +  D+G+ E+ RYYLSR T LEMLRDRGY VP S++ L+LQ+FR   GP PD++R
Sbjct: 28   KCFSSYA-DDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDR 86

Query: 949  LRISLPLLSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQ 770
            L+ S    SDPSK +LV+F G   +K+S +R +  QI    SL  +ILV+Q + T QA +
Sbjct: 87   LKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMK 146

Query: 769  ALATLSRVKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETD 590
            A+  L + KVE+FQ+TDLLVN+TKHVL PKH++L           Y + +KQ+PR+L  D
Sbjct: 147  AV-DLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKD 205

Query: 589  AVARYYGLEKGQVLKITSVGDVIGPHVTYRCV 494
            A+ARYYGLEKGQV+K+T  G++   HVTYRCV
Sbjct: 206  AIARYYGLEKGQVVKVTYSGEITESHVTYRCV 237


>ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
            RPABC1-like [Vitis vinifera]
          Length = 221

 Score =  214 bits (545), Expect = 6e-53
 Identities = 112/205 (54%), Positives = 142/205 (69%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            +++GS+ES RYYLSR T  +ML DRGY+VP S+L+ +L  FR SFG  PD  RLRI LPL
Sbjct: 18   MEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPL 77

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
            +S PSK ILVVFCG D ++ +V+R +  QIN    LHR+ILV+Q K    AR+ +     
Sbjct: 78   ISSPSKKILVVFCGTDEIRKAVIRVIFQQIN-REGLHRLILVLQSKMNSHARKVVDEYP- 135

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
            +KVE FQ+T+LL+N+TKHV +PKHEIL          KY + DKQ P M + DA+ARYYG
Sbjct: 136  IKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYG 195

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
            LEKGQV+KIT  G +    VTYRCV
Sbjct: 196  LEKGQVVKITYKGGMTDSLVTYRCV 220


>emb|CBI35146.3| unnamed protein product [Vitis vinifera]
          Length = 731

 Score =  214 bits (545), Expect = 6e-53
 Identities = 112/205 (54%), Positives = 142/205 (69%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            +++GS+ES RYYLSR T  +ML DRGY+VP S+L+ +L  FR SFG  PD  RLRI LPL
Sbjct: 528  MEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPL 587

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
            +S PSK ILVVFCG D ++ +V+R +  QIN    LHR+ILV+Q K    AR+ +     
Sbjct: 588  ISSPSKKILVVFCGTDEIRKAVIRVIFQQIN-REGLHRLILVLQSKMNSHARKVVDEYP- 645

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
            +KVE FQ+T+LL+N+TKHV +PKHEIL          KY + DKQ P M + DA+ARYYG
Sbjct: 646  IKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYG 705

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
            LEKGQV+KIT  G +    VTYRCV
Sbjct: 706  LEKGQVVKITYKGGMTDSLVTYRCV 730


>gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
            notabilis]
          Length = 231

 Score =  212 bits (540), Expect = 2e-52
 Identities = 108/205 (52%), Positives = 147/205 (71%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            +D+GSVES RY+LSR+T LEML+DRGY VP SD++L+L  FR  +G  PD++RLR S+  
Sbjct: 27   IDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIYGQIPDVDRLRFSVTH 86

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
            LSDPSK ILV+FC    +K++ VR +  QI   ++L  +ILV+Q + T QA++A+  L  
Sbjct: 87   LSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQSQMTNQAQKAVELLP- 145

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
             KVE+FQ+TDLL+N+TKH+L PKH +L          KYS+  KQ+PRM + DA+ARYYG
Sbjct: 146  FKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQLPRMSKNDAIARYYG 205

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
            LEKGQV+KI   G +   ++TYRCV
Sbjct: 206  LEKGQVVKIIYSGGITDSYITYRCV 230


>ref|XP_007028544.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
            [Theobroma cacao] gi|508717149|gb|EOY09046.1| Eukaryotic
            rpb5 RNA polymerase subunit family protein isoform 1
            [Theobroma cacao]
          Length = 228

 Score =  211 bits (537), Expect = 5e-52
 Identities = 111/205 (54%), Positives = 144/205 (70%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            VD+GS ES RYYLSR T LEMLRDRGY VP S+++L+LQ+FR  +G  PD +RLR+S   
Sbjct: 24   VDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEFRAIYGQSPDFDRLRLSATH 83

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
             +DPSK ILVVF G   +K+S +R +   I    SL  +ILV+Q   T QA +AL   S 
Sbjct: 84   KTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLILVLQNHITNQALKALDLFS- 142

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
             KVE+FQ+TDLLVN+TKHVL PKH++L          KYS+ +KQ+PR+L+ DA+ARYYG
Sbjct: 143  FKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIEEKQLPRLLKKDAIARYYG 202

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
             E+GQV+K+   G++   HVTYRCV
Sbjct: 203  YERGQVVKVMYDGEITQSHVTYRCV 227


>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Medicago
            truncatula] gi|124359979|gb|ABN07995.1| RNA polymerase
            subunit, RPB5; RNA polymerase Rpb5, N-terminal [Medicago
            truncatula] gi|355500048|gb|AES81251.1| DNA-directed RNA
            polymerases I, II, and III subunit RPABC1 [Medicago
            truncatula]
          Length = 248

 Score =  211 bits (536), Expect = 6e-52
 Identities = 106/204 (51%), Positives = 144/204 (70%)
 Frame = -2

Query: 1105 DEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPLL 926
            D GS+ES RYYLSR T LEML+DRGY +P  ++ L+L  FR   G  PD++RLR++    
Sbjct: 45   DNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHA 104

Query: 925  SDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSRV 746
            ++PSK ILVVF G   +K++ VR++  QI    SL  +IL++Q + T QA +A+  LS  
Sbjct: 105  TNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS-F 163

Query: 745  KVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYGL 566
            KVE+FQ+TDLLVN TKHVL PKH++L          KY + +KQ+PRML+TDA+ARYYGL
Sbjct: 164  KVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 223

Query: 565  EKGQVLKITSVGDVIGPHVTYRCV 494
            ++GQV+K+T  G++   HVTYRCV
Sbjct: 224  QRGQVVKVTYTGEITQMHVTYRCV 247


>emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
          Length = 206

 Score =  209 bits (531), Expect = 2e-51
 Identities = 100/205 (48%), Positives = 144/205 (70%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            +D GSVES R +L+R T +EMLRDRGY VP+++++ TL +FR  +  KP +ERL  +  L
Sbjct: 2    IDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTL 61

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
            +SDPSK + +VFC  + +K++ +R +  Q  E + L R++L++Q K   +AR+A+  + +
Sbjct: 62   VSDPSKKVQLVFCPPEPVKIATIREIYLQTKEEN-LSRLVLILQSKILSRAREAIKEIFK 120

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
             KV++FQ TDLLVN+TKHVL PKHE+L          +Y+V D Q+PRMLETDAVARYYG
Sbjct: 121  FKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYG 180

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
             +KG V+K+T  G++ G  V YRCV
Sbjct: 181  FDKGTVVKVTYDGELTGKRVAYRCV 205


>ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
            gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa
            Japonica Group] gi|125535725|gb|EAY82213.1| hypothetical
            protein OsI_37416 [Oryza sativa Indica Group]
            gi|125578454|gb|EAZ19600.1| hypothetical protein
            OsJ_35178 [Oryza sativa Japonica Group]
            gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza
            glaberrima]
          Length = 227

 Score =  209 bits (531), Expect = 2e-51
 Identities = 100/205 (48%), Positives = 144/205 (70%)
 Frame = -2

Query: 1108 VDEGSVESKRYYLSRMTTLEMLRDRGYDVPDSDLSLTLQQFRDSFGPKPDLERLRISLPL 929
            +D GSVES R +L+R T +EMLRDRGY VP+++++ TL +FR  +  KP +ERL  +  L
Sbjct: 23   IDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTL 82

Query: 928  LSDPSKLILVVFCGVDTLKLSVVRNVLTQINENHSLHRMILVMQGKTTPQARQALATLSR 749
            +SDPSK + +VFC  + +K++ +R +  Q  E + L R++L++Q K   +AR+A+  + +
Sbjct: 83   VSDPSKKVQLVFCPPEPVKIATIREIYLQTKEEN-LSRLVLILQSKILSRAREAIKEIFK 141

Query: 748  VKVELFQLTDLLVNVTKHVLMPKHEILGMXXXXXXXXKYSVADKQIPRMLETDAVARYYG 569
             KV++FQ TDLLVN+TKHVL PKHE+L          +Y+V D Q+PRMLETDAVARYYG
Sbjct: 142  FKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYG 201

Query: 568  LEKGQVLKITSVGDVIGPHVTYRCV 494
             +KG V+K+T  G++ G  V YRCV
Sbjct: 202  FDKGTVVKVTYDGELTGKRVAYRCV 226