BLASTX nr result
ID: Cocculus23_contig00009537
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00009537
(280 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAZ40333.1| hypothetical protein [Raphanus sativus] 108 1e-21
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 80 3e-13
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 79 5e-13
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 79 7e-13
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 78 1e-12
gb|ABA97895.2| retrotransposon protein, putative, Ty3-gypsy subc... 78 1e-12
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 77 2e-12
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 77 2e-12
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 77 2e-12
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 77 2e-12
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group] 77 2e-12
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 77 3e-12
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 77 3e-12
gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subc... 76 6e-12
gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Jap... 76 6e-12
gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Ja... 76 6e-12
ref|XP_004959519.1| PREDICTED: uncharacterized protein LOC101775... 75 7e-12
gb|ABB47073.1| retrotransposon, putative, centromere-specific [O... 75 7e-12
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 75 7e-12
gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Ja... 75 7e-12
>emb|CAZ40333.1| hypothetical protein [Raphanus sativus]
Length = 785
Score = 108 bits (269), Expect = 1e-21
Identities = 46/76 (60%), Positives = 61/76 (80%)
Frame = -2
Query: 279 ADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHI 100
AD KR + FE GD VW LTK+R+P +YNKL ++K+GP E++E+INPN YR++LPSH+
Sbjct: 688 ADTKRCELIFEPGDLVWVYLTKERLPLRDYNKLKSKKLGPVEVVERINPNVYRVRLPSHL 747
Query: 99 RTSDVFNVKHLIPYLG 52
RTSDVFN+KHL P+ G
Sbjct: 748 RTSDVFNIKHLSPFKG 763
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 80.1 bits (196), Expect = 3e-13
Identities = 39/75 (52%), Positives = 48/75 (64%)
Frame = -2
Query: 276 DRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIR 97
D+ R+HV F GD VW L KDR P +KL R GPF+++EKIN NAYRL+LP+
Sbjct: 1528 DKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPADFG 1587
Query: 96 TSDVFNVKHLIPYLG 52
S FN+ L PYLG
Sbjct: 1588 VSPTFNIADLKPYLG 1602
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/75 (52%), Positives = 47/75 (62%)
Frame = -2
Query: 276 DRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIR 97
D+ R+HV F GD VW L KDR P +KL R GPF+++EKIN NAYRL+LP
Sbjct: 1525 DKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPXDFG 1584
Query: 96 TSDVFNVKHLIPYLG 52
S FN+ L PYLG
Sbjct: 1585 VSPTFNIADLKPYLG 1599
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 79.0 bits (193), Expect = 7e-13
Identities = 38/75 (50%), Positives = 48/75 (64%)
Frame = -2
Query: 276 DRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIR 97
D+ R+HV F GD VW L KDR P +KL R GPF+++EKIN NAY+L+LP+
Sbjct: 1513 DKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDNAYKLELPADFG 1572
Query: 96 TSDVFNVKHLIPYLG 52
S FN+ L PYLG
Sbjct: 1573 VSPTFNIADLKPYLG 1587
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 78.2 bits (191), Expect = 1e-12
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = -2
Query: 279 ADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHI 100
+D+ R+ + FE GD VW L K+R P +KL R GPF+++EKIN NAYRL LP+
Sbjct: 1471 SDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDNAYRLDLPADF 1530
Query: 99 RTSDVFNVKHLIPYLG 52
S FN+ L PYLG
Sbjct: 1531 GVSPTFNIADLKPYLG 1546
>gb|ABA97895.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1108
Score = 77.8 bits (190), Expect = 1e-12
Identities = 37/72 (51%), Positives = 47/72 (65%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L KDR P +KL AR GPF++++KIN NAY+L+LP S
Sbjct: 934 KKHVTFEPGDLVWLHLRKDRFPNLRKSKLLARADGPFKVLQKINDNAYKLELPVDFGVSP 993
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 994 TFNIADLKPYLG 1005
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 77.4 bits (189), Expect = 2e-12
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L KDR P +KL R GPF++++KIN NAY+L+LP+ S
Sbjct: 1396 KKHVAFEPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKINDNAYKLELPADFGVSP 1455
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 1456 TFNIADLKPYLG 1467
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 77.0 bits (188), Expect = 2e-12
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L KDR P +KL R GPF++++KIN NAY+L+LP+ S
Sbjct: 1500 KKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSP 1559
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 1560 TFNIADLKPYLG 1571
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 77.0 bits (188), Expect = 2e-12
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L KDR P +KL R GPF++++KIN NAY+L+LP+ S
Sbjct: 1500 KKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSP 1559
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 1560 TFNIADLKPYLG 1571
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/75 (49%), Positives = 47/75 (62%)
Frame = -2
Query: 276 DRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIR 97
D+ RR + FE GD VW L K+R P +KL R GPF+++ KIN NAY++ LP+ R
Sbjct: 1418 DKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFR 1477
Query: 96 TSDVFNVKHLIPYLG 52
S FNV L PYLG
Sbjct: 1478 VSSTFNVADLKPYLG 1492
>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
Length = 1170
Score = 77.0 bits (188), Expect = 2e-12
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L KDR P +KL R GPF++++KIN NAY+L+LP+ S
Sbjct: 988 KKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSP 1047
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 1048 TFNIADLKPYLG 1059
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 76.6 bits (187), Expect = 3e-12
Identities = 37/75 (49%), Positives = 47/75 (62%)
Frame = -2
Query: 276 DRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIR 97
D+ RR + FE GD VW L K+R P +KL R GPF+++ KIN NAY++ LP+ R
Sbjct: 1579 DKGRRELNFEPGDMVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFR 1638
Query: 96 TSDVFNVKHLIPYLG 52
S FNV L PYLG
Sbjct: 1639 VSPTFNVADLKPYLG 1653
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 76.6 bits (187), Expect = 3e-12
Identities = 37/75 (49%), Positives = 47/75 (62%)
Frame = -2
Query: 276 DRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIR 97
D+ RR + FE GD VW L K+R P +KL R GPF+++ KIN NAY++ LP+ R
Sbjct: 1588 DKGRRELNFEPGDMVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFR 1647
Query: 96 TSDVFNVKHLIPYLG 52
S FNV L PYLG
Sbjct: 1648 VSPTFNVADLKPYLG 1662
>gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1392
Score = 75.9 bits (185), Expect = 6e-12
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L K+R P +KL R GPF++I+KIN NAY+L+LP+ S
Sbjct: 1199 KKHVTFEPGDLVWLHLRKNRFPNLRKSKLLPRADGPFKVIQKINDNAYKLELPADFGVSP 1258
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 1259 TFNIADLKPYLG 1270
>gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Japonica Group]
Length = 1357
Score = 75.9 bits (185), Expect = 6e-12
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L K+R P +KL R GPF++I+KIN NAY+L+LP+ S
Sbjct: 1164 KKHVTFEPGDLVWLHLRKNRFPNLRKSKLLPRADGPFKVIQKINDNAYKLELPADFGVSP 1223
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 1224 TFNIADLKPYLG 1235
>gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1450
Score = 75.9 bits (185), Expect = 6e-12
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L K+R P +KL R GPF++I+KIN NAY+L+LP+ S
Sbjct: 1257 KKHVTFEPGDLVWLHLRKNRFPNLRKSKLLPRADGPFKVIQKINDNAYKLELPADFGVSP 1316
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 1317 TFNIADLKPYLG 1328
>ref|XP_004959519.1| PREDICTED: uncharacterized protein LOC101775623 [Setaria italica]
Length = 911
Score = 75.5 bits (184), Expect = 7e-12
Identities = 38/72 (52%), Positives = 45/72 (62%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
R+ V+ E GD VW L KDR P +KL R GPF+IIEKIN NAY+L+LP S
Sbjct: 666 RKEVKLEPGDLVWLHLRKDRFPDLRKSKLMPRADGPFKIIEKINDNAYKLELPPEFGVSP 725
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 726 TFNITDLKPYLG 737
>gb|ABB47073.1| retrotransposon, putative, centromere-specific [Oryza sativa
Japonica Group]
Length = 203
Score = 75.5 bits (184), Expect = 7e-12
Identities = 37/72 (51%), Positives = 45/72 (62%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
R+ V+ E GD VW L KDR P +KL R GPF+I+EKIN NAY+L+LP S
Sbjct: 13 RQEVKLEPGDLVWLHLRKDRFPELRKSKLMPRADGPFKIVEKINDNAYKLELPPEFGVSP 72
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 73 TFNISDLKPYLG 84
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 75.5 bits (184), Expect = 7e-12
Identities = 35/72 (48%), Positives = 46/72 (63%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
++HV FE GD VW L KDR P +KL R GPF++++KIN N Y+L+LP+ S
Sbjct: 1500 KKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNTYKLELPADFGVSP 1559
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 1560 TFNIADLKPYLG 1571
>gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Japonica Group]
Length = 540
Score = 75.5 bits (184), Expect = 7e-12
Identities = 37/72 (51%), Positives = 45/72 (62%)
Frame = -2
Query: 267 RRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLKLPSHIRTSD 88
R+ V+ E GD VW L KDR P +KL R GPF+I+EKIN NAY+L+LP S
Sbjct: 350 RQEVKLEPGDLVWLHLRKDRFPELRKSKLMPRADGPFKIVEKINDNAYKLELPPEFGVSP 409
Query: 87 VFNVKHLIPYLG 52
FN+ L PYLG
Sbjct: 410 TFNISDLKPYLG 421