BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00009507
         (647 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22501.3| unnamed protein product [Vitis vinifera]               82   1e-13
ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mi...    82   1e-13
ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putativ...    75   2e-11
ref|XP_006478051.1| PREDICTED: KRR1 small subunit processome com...    70   4e-10
ref|XP_004297129.1| PREDICTED: KRR1 small subunit processome com...    70   7e-10
ref|XP_006441061.1| hypothetical protein CICLE_v10020638mg [Citr...    69   1e-09
ref|XP_007015208.1| RNA-binding KH domain-containing protein [Th...    67   4e-09
ref|XP_003569670.1| PREDICTED: ribosomal RNA assembly protein mi...    67   5e-09
gb|AFK40254.1| unknown [Medicago truncatula]                           66   8e-09
ref|XP_003617063.1| KRR1 small subunit processome component-like...    66   8e-09
ref|XP_006353009.1| PREDICTED: KRR1 small subunit processome com...    65   1e-08
ref|XP_004233160.1| PREDICTED: KRR1 small subunit processome com...    65   1e-08
ref|XP_006287914.1| hypothetical protein CARUB_v10001149mg [Caps...    65   2e-08
gb|EXC41712.1| hypothetical protein L484_000599 [Morus notabilis]      64   3e-08
ref|XP_003519473.1| PREDICTED: KRR1 small subunit processome com...    64   4e-08
ref|NP_001241422.1| uncharacterized protein LOC100816856 [Glycin...    64   4e-08
ref|XP_004491161.1| PREDICTED: KRR1 small subunit processome com...    62   1e-07
gb|EMT22584.1| hypothetical protein F775_26799 [Aegilops tauschii]     62   1e-07
ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabi...    62   1e-07
gb|EYU27544.1| hypothetical protein MIMGU_mgv1a007831mg [Mimulus...    61   3e-07

>emb|CBI22501.3| unnamed protein product [Vitis vinifera]
          Length = 424

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 48/109 (44%), Positives = 57/109 (52%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSK+DLQLESGEYFLSD                            AF+PP E   +D +K
Sbjct: 308 PSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREAAFVPPMEPMVQDPSK 367

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSR 319
             D +NDVAA+AMSL          K++EN+  ETYIAA GE  SKK R
Sbjct: 368 SADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGEAPSKKKR 416


>ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis
           vinifera]
          Length = 386

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 48/109 (44%), Positives = 57/109 (52%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSK+DLQLESGEYFLSD                            AF+PP E   +D +K
Sbjct: 270 PSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREAAFVPPMEPMVQDPSK 329

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSR 319
             D +NDVAA+AMSL          K++EN+  ETYIAA GE  SKK R
Sbjct: 330 SADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGEAPSKKKR 378


>ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
           gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly
           protein mis3, putative [Ricinus communis]
          Length = 377

 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 42/107 (39%), Positives = 54/107 (50%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSK+D +LESGEYFL++                            AF+PP+E  ++D  K
Sbjct: 264 PSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTAENKRKRDTAFVPPEEHRDQDAGK 323

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKK 325
            +D  NDVAA+A+S+           AVENI AE YIAA GE   KK
Sbjct: 324 SEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYIAASGELPKKK 370


>ref|XP_006478051.1| PREDICTED: KRR1 small subunit processome component homolog [Citrus
           sinensis]
          Length = 376

 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 44/111 (39%), Positives = 55/111 (49%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKID  LESGEYFLS+                            AFIPP+E + +++++
Sbjct: 266 PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSSE 325

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSRVK 313
            +D  NDVAA+A SL          K  ENI  E YIAA GE  SKK + K
Sbjct: 326 AEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK 376


>ref|XP_004297129.1| PREDICTED: KRR1 small subunit processome component homolog
           [Fragaria vesca subsp. vesca]
          Length = 384

 Score = 69.7 bits (169), Expect = 7e-10
 Identities = 42/109 (38%), Positives = 52/109 (47%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSK+D+QL +GEYFLSD                            AF+PP+E   +  NK
Sbjct: 270 PSKVDIQLATGEYFLSDKVKSEKKWKEQQERQAGKTAENKRKREAAFVPPEEPVVQH-NK 328

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSR 319
             DG  DVAALA  L          K +EN+  E Y+A  GEPS KKS+
Sbjct: 329 SDDGTKDVAALATCLKKKAKEYGNKKLIENVNPEAYLAESGEPSKKKSK 377


>ref|XP_006441061.1| hypothetical protein CICLE_v10020638mg [Citrus clementina]
           gi|557543323|gb|ESR54301.1| hypothetical protein
           CICLE_v10020638mg [Citrus clementina]
          Length = 376

 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 44/111 (39%), Positives = 54/111 (48%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKID  LESGEYFLS+                            AFIPP+E + +++ +
Sbjct: 266 PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCE 325

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSRVK 313
            +D  NDVAA+A SL          K  ENI  E YIAA GE  SKK + K
Sbjct: 326 AEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK 376


>ref|XP_007015208.1| RNA-binding KH domain-containing protein [Theobroma cacao]
           gi|508785571|gb|EOY32827.1| RNA-binding KH
           domain-containing protein [Theobroma cacao]
          Length = 445

 Score = 67.4 bits (163), Expect = 4e-09
 Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKID +LESGEYFLS+                           E+F+PPKE   +D+ +
Sbjct: 331 PSKIDQELESGEYFLSEKKKLAKKWQEKQEKQAQKTAENKRKREESFVPPKEPVKQDSRE 390

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPG--EPSSKKSRVK 313
            ++ + DVA L MSL          K+ +NI AE YIAAP   +P  KK + K
Sbjct: 391 SENDKEDVAVLTMSLKQKAKEFGKQKSFQNINAEEYIAAPAGKQPLKKKKKSK 443


>ref|XP_003569670.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
           distachyon]
          Length = 393

 Score = 67.0 bits (162), Expect = 5e-09
 Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTN--EDT 472
           PSKIDL+LESGEYF+SD                            AF+PPKE +    ++
Sbjct: 278 PSKIDLELESGEYFMSDKKKSAKKWQEKLDKQSEKMEEKKRKREAAFVPPKENSAGPSES 337

Query: 471 NKPKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSR 319
            KP   +N++A +  SL          +A EN+K ++YIA   EP +KK R
Sbjct: 338 AKPTHAKNEIADITKSLKNKAKKFRNSEAQENVKVDSYIATNEEPQTKKKR 388


>gb|AFK40254.1| unknown [Medicago truncatula]
          Length = 380

 Score = 66.2 bits (160), Expect = 8e-09
 Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSK+D+QLE+GEYFLSD                           E+F+PPKE  N   N 
Sbjct: 268 PSKVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRDESFVPPKEPANLVGNS 327

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYI-AAPGEPSSKKSR 319
            +D  N+VA +AMSL          K+ ENI AETYI  +  +PS KKS+
Sbjct: 328 -EDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMGSSDQPSKKKSK 376


>ref|XP_003617063.1| KRR1 small subunit processome component-like protein [Medicago
           truncatula] gi|355518398|gb|AET00022.1| KRR1 small
           subunit processome component-like protein [Medicago
           truncatula]
          Length = 424

 Score = 66.2 bits (160), Expect = 8e-09
 Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSK+D+QLE+GEYFLSD                           E+F+PPKE  N   N 
Sbjct: 312 PSKVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRDESFVPPKEPANLVGNS 371

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYI-AAPGEPSSKKSR 319
            +D  N+VA +AMSL          K+ ENI AETYI  +  +PS KKS+
Sbjct: 372 -EDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMGSSDQPSKKKSK 420


>ref|XP_006353009.1| PREDICTED: KRR1 small subunit processome component homolog [Solanum
           tuberosum]
          Length = 382

 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 53/109 (48%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKID QLESGEYFLSD                           EAF+PP+E    + + 
Sbjct: 271 PSKIDQQLESGEYFLSDKKKMAKQWEEKQVKQAEKVAENKKKREEAFVPPEEPKTHNQDV 330

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSR 319
               ++DV A+A SL          K+++ I AE +IA P +PS KKS+
Sbjct: 331 SNVDEDDVTAMASSLKRKAKEFRKQKSIDKIDAEEFIAGPSKPSKKKSK 379


>ref|XP_004233160.1| PREDICTED: KRR1 small subunit processome component homolog [Solanum
           lycopersicum]
          Length = 382

 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 53/109 (48%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKID QLESGEYFLSD                           EAF+PP+E    + + 
Sbjct: 271 PSKIDQQLESGEYFLSDKKKMAKQWEEKQVKQAEKVAENKKKREEAFVPPEEPKTHNQDV 330

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSR 319
               ++DV A+A SL          K+++ I AE +IA P +PS KKS+
Sbjct: 331 SNVDKDDVTAMASSLKRKAKEFRKQKSIDKINAEEFIAGPSKPSKKKSK 379


>ref|XP_006287914.1| hypothetical protein CARUB_v10001149mg [Capsella rubella]
           gi|482556620|gb|EOA20812.1| hypothetical protein
           CARUB_v10001149mg [Capsella rubella]
          Length = 390

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKIDLQLESGEYF+SD                            +F+PP+E  N  +N 
Sbjct: 276 PSKIDLQLESGEYFMSDKKKSEKKWQEKQEKQTEKSTENKRKRDASFLPPEEPVNNKSNN 335

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAV-ENIKAETYIAAPG--EPSSKKSRVK 313
            +DG++D+  L  SL          K   E + AE YIAAP   +PS K  +++
Sbjct: 336 SEDGKSDITELTYSLKSKTKELKKQKKTHERVNAEDYIAAPSADKPSKKSKKIR 389


>gb|EXC41712.1| hypothetical protein L484_000599 [Morus notabilis]
          Length = 367

 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 42/110 (38%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKID+QLE+GEYFLSD                            AF+PP+E   +D N 
Sbjct: 255 PSKIDIQLETGEYFLSDKTKSAKKWQEKQEKQAEKTAENKRKREAAFVPPEEPVKQDRNV 314

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGE-PSSKKSR 319
             D + DVAA+A SL          K  E + AE Y+A  GE P  KKS+
Sbjct: 315 KNDAE-DVAAMAKSLKKKAKEFGKQKMDETVNAEAYLAETGEKPPKKKSK 363


>ref|XP_003519473.1| PREDICTED: KRR1 small subunit processome component homolog [Glycine
           max]
          Length = 389

 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 44/111 (39%), Positives = 54/111 (48%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKID+QLE+GEYFLS+                           EAFIPPKE  N   +K
Sbjct: 277 PSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKREEAFIPPKEPANL-VDK 335

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSRVK 313
            +D  ++VA +AMSL          K+ ENI AETYI    E +S K   K
Sbjct: 336 SEDANSNVADMAMSLKKKTKKFGKRKSEENINAETYIIGSSEQASGKKSKK 386


>ref|NP_001241422.1| uncharacterized protein LOC100816856 [Glycine max]
           gi|255639399|gb|ACU19995.1| unknown [Glycine max]
          Length = 389

 Score = 63.9 bits (154), Expect = 4e-08
 Identities = 44/111 (39%), Positives = 54/111 (48%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKID+QLE+GEYFLS+                           EAFIPPKE  N   +K
Sbjct: 277 PSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKREEAFIPPKEPANL-VDK 335

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSRVK 313
            +D  N+VA +A+SL          K+ ENI AETYI    E +S K   K
Sbjct: 336 SEDANNNVADMAISLKKKTKKFGKRKSEENIDAETYIVGSSEQASGKKPKK 386


>ref|XP_004491161.1| PREDICTED: KRR1 small subunit processome component homolog [Cicer
           arietinum]
          Length = 382

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 42/110 (38%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSK+D+QLE+GEYF+++                           EAFIPPKE      N 
Sbjct: 270 PSKVDIQLETGEYFMTEKKKSAKKWQERQEKQAEKTAENKRKREEAFIPPKEHAKPVDNS 329

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGE-PSSKKSR 319
             D  N+V+ +AMSL          K+ ENI AETYI    E PS KKS+
Sbjct: 330 D-DATNNVSEMAMSLKKKAKKFGKRKSEENINAETYIMGSSEQPSKKKSK 378


>gb|EMT22584.1| hypothetical protein F775_26799 [Aegilops tauschii]
          Length = 392

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKIDL+LESGEYF+SD                            AF+PPKE T   +  
Sbjct: 278 PSKIDLELESGEYFMSDKKKSAKKWQEKLDKQSEKSEEKKRKREAAFVPPKENTAGLSES 337

Query: 465 PKD-GQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSR 319
            K    N++A +  SL          +A EN+K E+Y+A+  E  SKK R
Sbjct: 338 AKSTNDNEIADITKSLKKKAKKFRNSEAEENVKIESYVASNEESRSKKKR 387


>ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
           gi|13878039|gb|AAK44097.1|AF370282_1 putative rev
           interacting protein mis3 [Arabidopsis thaliana]
           gi|10178284|emb|CAC08342.1| rev interacting protein
           mis3-like [Arabidopsis thaliana]
           gi|23296614|gb|AAN13132.1| putative rev interacting
           protein mis3 [Arabidopsis thaliana]
           gi|332003916|gb|AED91299.1| RNA-binding KH
           domain-containing protein [Arabidopsis thaliana]
          Length = 391

 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKE--RTNEDT 472
           PSKID+QLESGEYF+SD                            +F+PP+E    N + 
Sbjct: 273 PSKIDMQLESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPMNNNSNA 332

Query: 471 NKPKDGQNDVAALAMSLXXXXXXXXXXKAV-ENIKAETYIAAPGEPSSKKSR 319
           NK +DG+ND+  L  SL          K   E + AE YIA P   + K S+
Sbjct: 333 NKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAGPSSSADKSSK 384


>gb|EYU27544.1| hypothetical protein MIMGU_mgv1a007831mg [Mimulus guttatus]
          Length = 394

 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 39/109 (35%), Positives = 50/109 (45%)
 Frame = -3

Query: 645 PSKIDLQLESGEYFLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFIPPKERTNEDTNK 466
           PSKIDLQLESGEYFLSD                             F+PP+E   + +N 
Sbjct: 282 PSKIDLQLESGEYFLSDQMKQAKKWHDKQEKQAEKIAEGKKRREAGFVPPEE-PKKQSNA 340

Query: 465 PKDGQNDVAALAMSLXXXXXXXXXXKAVENIKAETYIAAPGEPSSKKSR 319
             D + +VA LA+SL          ++ E + A  YIA P   S KKS+
Sbjct: 341 HTDNKTNVADLALSLKKKTKDFGMRESAEKLDAADYIAVPDTSSKKKSK 389