BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00009207
         (3370 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1466   0.0  
gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus...  1429   0.0  
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...  1429   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1424   0.0  
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1414   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1414   0.0  
ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1413   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1412   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]  1406   0.0  
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...  1405   0.0  
emb|CBI27412.3| unnamed protein product [Vitis vinifera]             1402   0.0  
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...  1399   0.0  
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...  1399   0.0  
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A...  1395   0.0  
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...  1392   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...  1391   0.0  
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1389   0.0  
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...  1388   0.0  
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1387   0.0  
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...  1387   0.0  

>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1466 bits (3794), Expect = 0.0
 Identities = 715/854 (83%), Positives = 770/854 (90%)
 Frame = -3

Query: 3368 QRQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 3189
            ++Q KL+GG+ QGK+ +LRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPY+KSLF
Sbjct: 126  EKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLF 185

Query: 3188 LGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCA 3009
            LGWFEPLRD IA EQ+LCK GKNR AYAPYFDHLPADMMAVITMHKLMGLLMTG  +G A
Sbjct: 186  LGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSA 245

Query: 3008 RVVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADAKQQERLRKKVTNLMK 2829
            RVV AAC IGEAIEHE RI RF+E+TKKK+      DGG      K+QE+LRKKV+ LMK
Sbjct: 246  RVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV-TKEQEKLRKKVSMLMK 304

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQKLQQVRQIVK QDD KPWGQDA  KVGSRLIELL+ETAYIQPP DQ  DG PDIRPAF
Sbjct: 305  KQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAF 364

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LKTV K+TQK ++RYGVIECDPLVR+GLE+TARHMVIPYMPMLVPP+NWTGYDKGAY
Sbjct: 365  VHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAY 424

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSYVMR HGA+QQREA+KR  R  LEP FEAL+TLGNTKWR+NKRVL VIDRIWASG
Sbjct: 425  LFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASG 484

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                DTED AEIR WKWK+++ KKENSERHSQRCDIELKLAVARKM
Sbjct: 485  GRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKM 544

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            KDE+ FFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK GL+WLKIH+AN+
Sbjct: 545  KDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANV 604

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            YAGGVDKLS +GRV FTENHL+DIFDSADRPLEGRRWWL AEDPFQCLA CINLSEALRS
Sbjct: 605  YAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRS 664

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
            SSPETTIS+MPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSGIAARVL+IM
Sbjct: 665  SSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIM 724

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA+KDPATEPNALRARLLI+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK R AI 
Sbjct: 725  QRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIA 784

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            DE E+F ASCYAAK TLTALGEMF+AARSIMSWLGDCAKVIASENH VRW TPLGLPVVQ
Sbjct: 785  DEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQ 844

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRHLIKTSLQVL+LQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+KAGL
Sbjct: 845  PYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGL 904

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            NFAGVHDSYWTHACDVDEMNRILREKFVELY  PILENLLE F++SFPTL+FPPLPERGD
Sbjct: 905  NFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGD 964

Query: 848  FDLREVLESTYFFN 807
            FDLREVLES YFFN
Sbjct: 965  FDLREVLESPYFFN 978


>gb|EYU28900.1| hypothetical protein MIMGU_mgv1a000798mg [Mimulus guttatus]
          Length = 983

 Score = 1429 bits (3700), Expect = 0.0
 Identities = 688/854 (80%), Positives = 765/854 (89%)
 Frame = -3

Query: 3368 QRQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 3189
            Q+Q KLVGGMG GKY  LRRRQ++IETEAWE AAKEY+ELLEDMCEQKLAPNLPY+KSLF
Sbjct: 133  QKQPKLVGGMGLGKYNSLRRRQIKIETEAWENAAKEYQELLEDMCEQKLAPNLPYIKSLF 192

Query: 3188 LGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCA 3009
            LGWFEPLRD IA EQ+LCK GKNRGAYAPYFD LPA+MMAVITMHKLMGLLMTGG +G A
Sbjct: 193  LGWFEPLRDAIAAEQDLCKEGKNRGAYAPYFDQLPAEMMAVITMHKLMGLLMTGGGNGSA 252

Query: 3008 RVVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADAKQQERLRKKVTNLMK 2829
            RVV AAC IGEAIEHE RIH+FL+  K+K    + ++ G  D +AK+Q+RLRKKV  LMK
Sbjct: 253  RVVQAACHIGEAIEHEVRIHKFLDNCKRKNALNRTSEEGP-DPEAKEQDRLRKKVKILMK 311

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQK+QQVR IV+ QDD+KPWGQDAQ KVG RLI++L +TAYIQPPVDQ  DG PDIRPAF
Sbjct: 312  KQKVQQVRNIVRHQDDLKPWGQDAQVKVGCRLIQILTQTAYIQPPVDQRDDGAPDIRPAF 371

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LK V  +T K S+RYGVIECDPLVR+G+E+TARHMVIPYMPMLVPP+NWTGY++GAY
Sbjct: 372  VHTLKCV--ETLKGSRRYGVIECDPLVRKGMEKTARHMVIPYMPMLVPPLNWTGYERGAY 429

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSY+MRTHGAKQQREAVKRT + +LEP+F+AL+TLGNTKWRVNKR+LSV+DRIWA+G
Sbjct: 430  LFLPSYMMRTHGAKQQREAVKRTPKQELEPIFQALNTLGNTKWRVNKRILSVVDRIWANG 489

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                DTED AEI+ WKWK+KA KK NSERHSQRCDIELKLAVARK+
Sbjct: 490  GRLADLVDREDLPLPEEPDTEDEAEIKKWKWKVKAVKKVNSERHSQRCDIELKLAVARKI 549

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            K+EE F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK GLQWLK+H+ANL
Sbjct: 550  KEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLQWLKVHLANL 609

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            Y GGVDK S DGR++FTENH++DIFDSADRPLEG+RWWLGAEDPFQCLA C++L+EALRS
Sbjct: 610  YGGGVDKFSYDGRISFTENHMEDIFDSADRPLEGKRWWLGAEDPFQCLATCMSLTEALRS 669

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
              PE+T+SY+PVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM
Sbjct: 670  PYPESTVSYIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIM 729

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA KDPA +PN +RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK R ++ 
Sbjct: 730  KRDAAKDPADDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERASME 789

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            D+TELF  +CYAAK TLTALGEMF+AARSIMSWLGDCAK+IA+ENH VRWTTPLGLPVVQ
Sbjct: 790  DDTELFACACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIATENHPVRWTTPLGLPVVQ 849

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRH+IKTSLQVLTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTAIAC +AGL
Sbjct: 850  PYRKLGRHMIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTAIACSEAGL 909

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            +FAGVHDSYWTHACDVD+MN ILREKFVELYE PILENLL+ F+QSFP L FPPLPERGD
Sbjct: 910  SFAGVHDSYWTHACDVDKMNEILREKFVELYEAPILENLLDGFQQSFPKLKFPPLPERGD 969

Query: 848  FDLREVLESTYFFN 807
            FDLREVL+STYFFN
Sbjct: 970  FDLREVLDSTYFFN 983


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
            gi|462422319|gb|EMJ26582.1| hypothetical protein
            PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 1429 bits (3700), Expect = 0.0
 Identities = 701/865 (81%), Positives = 762/865 (88%), Gaps = 15/865 (1%)
 Frame = -3

Query: 3356 KLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWF 3177
            ++V GMG GKY LLR+RQ+++ETEAW++AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 142  RVVVGMGVGKYNLLRKRQIKLETEAWQEAAKEYQELLADMCEQKLAPNLPYIKSLFLGWF 201

Query: 3176 EPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTG-GEHGCARVV 3000
            EPLRD IA +Q+ CK   +R ++APYFDHLPAD MAVITMHKLMGLLMT  G  G  RVV
Sbjct: 202  EPLRDAIAADQDSCKQPNSRQSHAPYFDHLPADKMAVITMHKLMGLLMTNNGGIGSVRVV 261

Query: 2999 HAACQIGEAIEHEARIHRFLERTKKKT---DKGKRADG-----------GETDADAKQQE 2862
             AAC IGEAIEHE RIHRFLE+TKKK    DK   AD             E +   K+QE
Sbjct: 262  QAACAIGEAIEHEVRIHRFLEKTKKKKNTIDKKAEADSVPVTIEQEKLADEQEKLTKEQE 321

Query: 2861 RLRKKVTNLMKKQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQS 2682
            RLRKKV  L+K+QK+QQVR IVKEQ+D+KPWGQ+A  KVG RLI+LLM+TAYIQPPVDQ 
Sbjct: 322  RLRKKVNKLIKRQKMQQVRGIVKEQEDLKPWGQEAHVKVGCRLIQLLMDTAYIQPPVDQI 381

Query: 2681 ADGTPDIRPAFRHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPP 2502
             DG PDIRPAF H+LKT+T+DTQKTS+RYGVIECDP+VR+G+E+TARHMV+PYMPMLVPP
Sbjct: 382  GDGPPDIRPAFVHNLKTITRDTQKTSRRYGVIECDPIVRKGMEKTARHMVMPYMPMLVPP 441

Query: 2501 VNWTGYDKGAYLFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRV 2322
            +NWTGYD+GAYLFLPSYVMRTHGAKQQRE VKRT R QLEPVFEALDTLG+TKWRVNKRV
Sbjct: 442  INWTGYDRGAYLFLPSYVMRTHGAKQQREVVKRTPRKQLEPVFEALDTLGSTKWRVNKRV 501

Query: 2321 LSVIDRIWASGGRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCD 2142
            L VIDRIWASGGR                DTED AEIR WKWKLKAAKKENSERHSQRCD
Sbjct: 502  LGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKLKAAKKENSERHSQRCD 561

Query: 2141 IELKLAVARKMKDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLG 1962
            IELKLA +RKMKDEE F+YPHNLDFRGRAYPMHPYLNHLGSD+CRGILEF+EGR LGK G
Sbjct: 562  IELKLAASRKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDMCRGILEFSEGRHLGKSG 621

Query: 1961 LQWLKIHIANLYAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 1782
            L+WLKIH+ANLYAGGVDKLS D R  FTENH+D+IFDSADRPLEGRRWWLGAEDPFQCLA
Sbjct: 622  LRWLKIHLANLYAGGVDKLSFDDRAAFTENHVDEIFDSADRPLEGRRWWLGAEDPFQCLA 681

Query: 1781 ACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVY 1602
            ACINL EALRS SPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV GDKPADVY
Sbjct: 682  ACINLCEALRSPSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVY 741

Query: 1601 SGIAARVLEIMRRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQI 1422
            SGIAARVL+IMR DAEKDPAT PNAL ARLLINQVDRKLVKQTVMTSVYGVTY+GARDQI
Sbjct: 742  SGIAARVLDIMRNDAEKDPATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYVGARDQI 801

Query: 1421 KRRLKGRGAITDETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVR 1242
            KRRLK RG+I D+T LF A+CYAA+ TLTALGEMF+AARSIMSWLG+CAKVIASEN  VR
Sbjct: 802  KRRLKERGSIADDTALFAAACYAARTTLTALGEMFEAARSIMSWLGECAKVIASENQPVR 861

Query: 1241 WTTPLGLPVVQPYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 1062
            W TPLGLPVVQPYR+ GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM
Sbjct: 862  WITPLGLPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMM 921

Query: 1061 MTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPT 882
            MTA+ACKKAGLNFAGVHDSYWTHACD+DEMNRILREKFVELYE PILENLLE F+QSFPT
Sbjct: 922  MTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREKFVELYEAPILENLLEGFQQSFPT 981

Query: 881  LSFPPLPERGDFDLREVLESTYFFN 807
            L+FPPLP+RGDFDLR+VLES YFFN
Sbjct: 982  LTFPPLPDRGDFDLRDVLESPYFFN 1006


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1424 bits (3685), Expect = 0.0
 Identities = 696/856 (81%), Positives = 758/856 (88%), Gaps = 2/856 (0%)
 Frame = -3

Query: 3368 QRQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 3189
            + + K+  GM QG+Y  LRRRQV+IETEAWE AAKEYKELL DMCEQKLAPNLPYMKSLF
Sbjct: 180  REKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLF 239

Query: 3188 LGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCA 3009
            LGWFEPLRD I KEQELC+LGKN+ AYAPYFD LPADMM+VITMHKL+GLLMTGGEHG  
Sbjct: 240  LGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGST 299

Query: 3008 RVVHAACQIGEAIEHEARIHRFLERTK-KKTDKGKRADGGETDADAKQQERLRKKVTNLM 2832
            RVV AAC IG+AIE E RIH FLE+TK KK  K K  +GG  D    +QE+LRKKVTNLM
Sbjct: 300  RVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLM 359

Query: 2831 KKQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVD-QSADGTPDIRP 2655
            KKQKL   RQIVK  D+ KPWG +A+AKVGSRLIELLM+TAYIQPPVD Q AD  PDIRP
Sbjct: 360  KKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRP 419

Query: 2654 AFRHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKG 2475
            AF H+ KTV ++ +K  +R+GVIECDPLV++GLERTARHMVIPY+PMLVPP+ WTGYDKG
Sbjct: 420  AFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKG 479

Query: 2474 AYLFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWA 2295
            A+LFLPSYVMRTHGA+QQREAVKR  R QLEPVFEAL+TLGNTKWR+NKR+  V+DRIWA
Sbjct: 480  AHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDRIWA 539

Query: 2294 SGGRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVAR 2115
             GG                 DTED A++R WKWK+K+ KK NSERHSQRCDIELKLAVAR
Sbjct: 540  GGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLAVAR 599

Query: 2114 KMKDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIA 1935
            KMKDE+ FFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG  GL WLKIH+A
Sbjct: 600  KMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLKIHLA 659

Query: 1934 NLYAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEAL 1755
            NL+AGGVDKLS++GR+TFTENHLDDIFDSADRPLEG+RWWL AEDPFQ LAACINLSEAL
Sbjct: 660  NLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINLSEAL 719

Query: 1754 RSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLE 1575
            RSSSPETTIS++PVHQDGSCNGLQHYAALGRD+LGA AVNLVAG+KPADVYSGIAARVL+
Sbjct: 720  RSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAARVLD 779

Query: 1574 IMRRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGA 1395
            IM+RDAEKDPA  P+ALRAR+LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK R A
Sbjct: 780  IMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNA 839

Query: 1394 ITDETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPV 1215
            I D+ ELFGA+CYAAK+TLTALGEMFQAARSIMSWLGDCAK+IASEN  VRWTTPLGLPV
Sbjct: 840  IADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPLGLPV 899

Query: 1214 VQPYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKA 1035
            VQPYRK GRHLIKTSLQVLTLQRET+ +MVKRQRTAFPPNFVHSLDGSHMMMTAIACKKA
Sbjct: 900  VQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKA 959

Query: 1034 GLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPER 855
            GLNFAGVHDSYWTHACDVDEMNR+LREKFV+LYETPILENLLE F+QSFP L FPPLPER
Sbjct: 960  GLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPPLPER 1019

Query: 854  GDFDLREVLESTYFFN 807
            GDFDLREVLES YFFN
Sbjct: 1020 GDFDLREVLESPYFFN 1035


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score = 1414 bits (3660), Expect = 0.0
 Identities = 693/854 (81%), Positives = 756/854 (88%), Gaps = 1/854 (0%)
 Frame = -3

Query: 3365 RQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFL 3186
            +Q K VGGMG GKY LLRRRQ+++ETEAWE AAKEY+ELL DMCEQKLAPNLPY+KSLFL
Sbjct: 145  KQPKTVGGMGIGKYNLLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFL 204

Query: 3185 GWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCAR 3006
            GWFEPLRD IA EQ+LC  GKNRGAYAP+FD LPA+MMAVITMHKLMGLLMTGG  G AR
Sbjct: 205  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSAR 264

Query: 3005 VVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADA-KQQERLRKKVTNLMK 2829
            VV AA  IGEAIEHEARIHRFLE+TKK    G      ET  D  K++ERLRKKV  LMK
Sbjct: 265  VVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLE---ETAGDIMKERERLRKKVKILMK 321

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQKLQQVR+IVK+QDD KPWGQD   KVG +LI++L+ETAYIQPP DQ  D  PDIRPAF
Sbjct: 322  KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCKLIQILIETAYIQPPNDQLDDCPPDIRPAF 381

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LKTV  +T K S+RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP NW+GYD+GAY
Sbjct: 382  MHTLKTV--ETVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAY 439

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSY+MRTHGAKQQREAVKR  + QLEPVF+ALDTLGNTKWRVNKRVL ++DRIWASG
Sbjct: 440  LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASG 499

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                DTED  EI+ WKWK+KAAKKEN ERHSQRCDIELKLAVARKM
Sbjct: 500  GRLADLVDREDVPLPEEPDTEDEEEIKKWKWKVKAAKKENCERHSQRCDIELKLAVARKM 559

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            KDEE F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF+EGRPLGK GL+WLKIH+AN+
Sbjct: 560  KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLRWLKIHLANV 619

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            Y GGVDKLS +GR  F+ENH++DIFDSADRPLEGRRWWLGAEDPFQCLA CIN+SEALRS
Sbjct: 620  YGGGVDKLSYEGRAAFSENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATCINISEALRS 679

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
             SPET+IS+MP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM
Sbjct: 680  PSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIM 739

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA+KDPAT+PN +RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RGAI 
Sbjct: 740  KRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIE 799

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            D+ ELF A+CYAAK TLTALGEMF+AARSIMSWLGDCAK+IA EN  VRWTTPLGLPVVQ
Sbjct: 800  DDNELFSAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENQPVRWTTPLGLPVVQ 859

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAI CK+AGL
Sbjct: 860  PYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAITCKEAGL 919

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            +FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILENLLE F+QSFP L FPPLPERGD
Sbjct: 920  SFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGD 979

Query: 848  FDLREVLESTYFFN 807
            FDLREVLES YFFN
Sbjct: 980  FDLREVLESPYFFN 993


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1414 bits (3659), Expect = 0.0
 Identities = 689/854 (80%), Positives = 753/854 (88%), Gaps = 1/854 (0%)
 Frame = -3

Query: 3365 RQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFL 3186
            +Q K +GGMG GKY  LRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFL
Sbjct: 153  KQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 3185 GWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCAR 3006
            GWFEPLRD IA EQ+LC  GKNRGAYAP+FD LPA+MMAVITMHKLMGLLMTGG  G AR
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSAR 272

Query: 3005 VVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADA-KQQERLRKKVTNLMK 2829
            VV AA  IGEAIEHEARIHRFLE+TKK        D  ET  D  K++ERLRKKV  LMK
Sbjct: 273  VVQAASYIGEAIEHEARIHRFLEKTKKSN--ALSGDLEETPGDMMKERERLRKKVKILMK 330

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQKL+QVR+IVK+QDD KPWGQD   KVG RLI++LMETAYIQPP DQ  DG PDIRPAF
Sbjct: 331  KQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAF 390

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LKTV  +T K S+RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKG Y
Sbjct: 391  VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGY 448

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSY+MRTHGAKQQREAVKR  + QLEPVF+ALDTLGNTKWRVN++VL ++DRIWASG
Sbjct: 449  LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASG 508

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                DTED AEIR WKWK+K  KKEN ERHSQRCDIELKLAVARKM
Sbjct: 509  GRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKM 568

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            KDE+ F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG  GL+WLKIH+AN+
Sbjct: 569  KDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANV 628

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            Y GGVDKLS +GRV F+ENHL+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EALRS
Sbjct: 629  YGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRS 688

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
             SPET ISYMP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM
Sbjct: 689  PSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIM 748

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA KDPA +PN +RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLK RG I 
Sbjct: 749  KRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIE 808

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            D+ ELF A+CYAAK TLTALGEMF+AARSIMSWLGDCAK+IA ENH VRWTTPLGLPVVQ
Sbjct: 809  DDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQ 868

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK++GL
Sbjct: 869  PYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGL 928

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            +FAGVHDSYWTHACDVD+MN+ILREKFVELY+ PILENLLE F+QSFP L FPPLPERGD
Sbjct: 929  SFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGD 988

Query: 848  FDLREVLESTYFFN 807
            FDLREVLES YFFN
Sbjct: 989  FDLREVLESPYFFN 1002


>ref|XP_004239009.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            lycopersicum]
          Length = 993

 Score = 1413 bits (3658), Expect = 0.0
 Identities = 693/854 (81%), Positives = 757/854 (88%), Gaps = 1/854 (0%)
 Frame = -3

Query: 3365 RQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFL 3186
            +Q K VGGMG GKY LLRRRQ+++ETEAWE AAKEY+ELL DMCEQKLAPNLPY+KSLFL
Sbjct: 145  KQPKTVGGMGIGKYNLLRRRQIKVETEAWEDAAKEYQELLMDMCEQKLAPNLPYIKSLFL 204

Query: 3185 GWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCAR 3006
            GWFEPL+D IA EQ+LC  GKNRGAYAP+FD LPA+MMAVITMHKLMGLLMTGG  G AR
Sbjct: 205  GWFEPLKDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGSGSAR 264

Query: 3005 VVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADA-KQQERLRKKVTNLMK 2829
            VV AA  IGEAIEHEARIHRFLE+TKK    G      ET  D  K++ERLRKKV  LMK
Sbjct: 265  VVQAASHIGEAIEHEARIHRFLEKTKKNALDGSLE---ETAGDIMKERERLRKKVKILMK 321

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQKLQQVR+IVK+QDD KPWGQD   KVG RLI++L+ETAYIQPP DQ  D  PDIRPAF
Sbjct: 322  KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILIETAYIQPPNDQLEDCPPDIRPAF 381

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LKTV  DT K S+RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP NW+GYD+GAY
Sbjct: 382  MHTLKTV--DTVKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQNWSGYDRGAY 439

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSY+MRTHGAKQQREAVKR  + QLEPVF+ALDTLGNTKWRVNKRVL ++DRIWASG
Sbjct: 440  LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNKRVLGILDRIWASG 499

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                DTE+  EI+ WKWK+KAAKKEN ERHSQRCDIELKLAVARKM
Sbjct: 500  GRLADLVDREDVPLPEEPDTENEEEIKKWKWKVKAAKKENCERHSQRCDIELKLAVARKM 559

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            KDEE F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF+EGRPLGK GL+WLKIH+AN+
Sbjct: 560  KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLRWLKIHLANV 619

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            Y GGVDKLS +GR  F+ENH++DIFDSADRPLEGRRWWLGAEDPFQCLA CI++SEALRS
Sbjct: 620  YGGGVDKLSCEGRAAFSENHVEDIFDSADRPLEGRRWWLGAEDPFQCLATCISISEALRS 679

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
             SPET+IS+MP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM
Sbjct: 680  PSPETSISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIM 739

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA+KDPAT+PN +RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RGAI 
Sbjct: 740  KRDADKDPATDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIE 799

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            D+ ELF A+CYAAK TLTALGEMF+AARSIMSWLGDCAK+IA EN  VRWTTPLGLPVVQ
Sbjct: 800  DDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENQPVRWTTPLGLPVVQ 859

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK+AGL
Sbjct: 860  PYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKEAGL 919

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            +FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILENLLE F+QSFP L FPPLPERGD
Sbjct: 920  SFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGD 979

Query: 848  FDLREVLESTYFFN 807
            FDLREVLES YFFN
Sbjct: 980  FDLREVLESPYFFN 993


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1412 bits (3654), Expect = 0.0
 Identities = 688/854 (80%), Positives = 753/854 (88%), Gaps = 1/854 (0%)
 Frame = -3

Query: 3365 RQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFL 3186
            +Q K +GGMG GKY  LRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFL
Sbjct: 153  KQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 3185 GWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCAR 3006
            GWFEPLRD IA EQ+LC  GKNRGAYAP+FD LPA+MMAVITMHKLMGLLMTGG  G AR
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSAR 272

Query: 3005 VVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADA-KQQERLRKKVTNLMK 2829
            VV AA  IGEAIEHEARIHRFLE+TKK        D  ET  D  K++ERLRKKV  LMK
Sbjct: 273  VVQAASYIGEAIEHEARIHRFLEKTKKSN--ALSGDLEETPGDMMKERERLRKKVKILMK 330

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQKL+QVR+IVK+QDD KPWGQD   KVG RLI++LMETAYIQPP DQ  DG PDIRPAF
Sbjct: 331  KQKLRQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAF 390

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LKTV  +T K S+RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKG Y
Sbjct: 391  VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGY 448

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSY+MRTHGAKQQREAVKR  + QLEPVF+ALDTLGNTKWRVN++VL +++RIWASG
Sbjct: 449  LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASG 508

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                DTED AEIR WKWK+K  KKEN ERHSQRCDIELKLAVARKM
Sbjct: 509  GRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKM 568

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            KDE+ F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG  GL+WLKIH+AN+
Sbjct: 569  KDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANV 628

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            Y GGVDKLS +GRV F+ENHL+DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EALRS
Sbjct: 629  YGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRS 688

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
             SPET ISYMP+HQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVL+IM
Sbjct: 689  PSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIM 748

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA KDPA +PN +RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLK RG I 
Sbjct: 749  KRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIE 808

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            D+ ELF A+CYAAK TLTALGEMF+AARSIMSWLGDCAK+IA ENH VRWTTPLGLPVVQ
Sbjct: 809  DDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQ 868

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK++GL
Sbjct: 869  PYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGL 928

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            +FAGVHDSYWTHACDVD+MN+ILREKFVELY+ PILENLLE F+QSFP L FPPLPERGD
Sbjct: 929  SFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGD 988

Query: 848  FDLREVLESTYFFN 807
            FDLREVLES YFFN
Sbjct: 989  FDLREVLESPYFFN 1002


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1406 bits (3639), Expect = 0.0
 Identities = 686/854 (80%), Positives = 752/854 (88%), Gaps = 1/854 (0%)
 Frame = -3

Query: 3365 RQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFL 3186
            +Q K +GGMG GKY LLRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFL
Sbjct: 153  KQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 3185 GWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCAR 3006
            GWFEPLRD IA EQ+LC  GKNRGAYAP+FD LPA+MMAVITMHKLMGLLMTGG  G AR
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSAR 272

Query: 3005 VVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADA-KQQERLRKKVTNLMK 2829
            VV AA  IGEAIEHEARIHRFLE+TKK        D  +T  D  K++ERLRKKV  LMK
Sbjct: 273  VVQAASHIGEAIEHEARIHRFLEKTKKSN--ALSGDLEDTPGDIMKERERLRKKVKILMK 330

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQKLQQVR+IVK+QDD KPWGQD   KVG RLI++LMETAYIQPP DQ  D  PDIRPAF
Sbjct: 331  KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAF 390

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LKTV  +T K S+RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKGAY
Sbjct: 391  VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSY+MRTHGAKQQREAVKR  + QLEPVF+ALDTLGNTKWR+N++VL ++DRIWASG
Sbjct: 449  LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                D ED A+IR WKWK+K  KKEN ERHSQRCDIELKLAVARKM
Sbjct: 509  GRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKM 568

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            KDE+ F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK GL+WLKIH+AN+
Sbjct: 569  KDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANV 628

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            Y GGVDKLS +GRV F+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EALRS
Sbjct: 629  YGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRS 688

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
             SPET ISYMP+HQDGSCNGLQHYAALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IM
Sbjct: 689  PSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIM 748

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA KDPA +PN +RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RG I 
Sbjct: 749  KRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIE 808

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            D+ ELF A+CYAAK TLTALGEMF+AARSIMSWLGDCAK+IA ENH VRWTTPLGLPVVQ
Sbjct: 809  DDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQ 868

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK++GL
Sbjct: 869  PYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGL 928

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            +FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILENLLE F+QSFP L FPPLPERGD
Sbjct: 929  SFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGD 988

Query: 848  FDLREVLESTYFFN 807
            FDLREVLES YFFN
Sbjct: 989  FDLREVLESPYFFN 1002


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1405 bits (3636), Expect = 0.0
 Identities = 685/854 (80%), Positives = 752/854 (88%), Gaps = 1/854 (0%)
 Frame = -3

Query: 3365 RQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFL 3186
            +Q K +GGMG GKY LLRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFL
Sbjct: 153  KQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 3185 GWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCAR 3006
            GWFEPLRD IA EQ+LC  GKNRGAYAP+FD LPA+MMAVITMHKLMGLLMTGG  G AR
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSAR 272

Query: 3005 VVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADA-KQQERLRKKVTNLMK 2829
            VV AA  IGEAIEHEARIHRFLE+TKK        D  +T  D  K++ER+RKKV  LMK
Sbjct: 273  VVQAASHIGEAIEHEARIHRFLEKTKKSN--ALSGDLEDTPGDIMKERERVRKKVKILMK 330

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQKLQQVR+IVK+QDD KPWGQD   KVG RLI++LMETAYIQPP DQ  D  PDIRPAF
Sbjct: 331  KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAF 390

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LKTV  +T K S+RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKGAY
Sbjct: 391  VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSY+MRTHGAKQQREAVKR  + QLEPVF+ALDTLGNTKWR+N++VL ++DRIWASG
Sbjct: 449  LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                D ED A+IR WKWK+K  KKEN ERHSQRCDIELKLAVARKM
Sbjct: 509  GRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKM 568

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            KDE+ F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK GL+WLKIH+AN+
Sbjct: 569  KDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANV 628

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            Y GGVDKLS +GRV F+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EALRS
Sbjct: 629  YGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRS 688

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
             SPET ISYMP+HQDGSCNGLQHYAALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IM
Sbjct: 689  PSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIM 748

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA KDPA +PN +RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RG I 
Sbjct: 749  KRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIE 808

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            D+ ELF A+CYAAK TLTALGEMF+AARSIMSWLGDCAK+IA ENH VRWTTPLGLPVVQ
Sbjct: 809  DDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQ 868

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK++GL
Sbjct: 869  PYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGL 928

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            +FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILENLLE F+QSFP L FPPLPERGD
Sbjct: 929  SFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGD 988

Query: 848  FDLREVLESTYFFN 807
            FDLREVLES YFFN
Sbjct: 989  FDLREVLESPYFFN 1002


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score = 1402 bits (3629), Expect = 0.0
 Identities = 687/811 (84%), Positives = 731/811 (90%)
 Frame = -3

Query: 3239 MCEQKLAPNLPYMKSLFLGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVIT 3060
            MCEQKLAPNLPY+KSLFLGWFEPLRD IA EQ+LCK GKNR AYAPYFDHLPADMMAVIT
Sbjct: 1    MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60

Query: 3059 MHKLMGLLMTGGEHGCARVVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDA 2880
            MHKLMGLLMTG  +G ARVV AAC IGEAIEHE RI RF+E+TKKK+      DGG    
Sbjct: 61   MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120

Query: 2879 DAKQQERLRKKVTNLMKKQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQ 2700
              K+QE+LRKKV+ LMKKQKLQQVRQIVK QDD KPWGQDA  KVGSRLIELL+ETAYIQ
Sbjct: 121  -TKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQ 179

Query: 2699 PPVDQSADGTPDIRPAFRHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYM 2520
            PP DQ  DG PDIRPAF H+LKTV K+TQK ++RYGVIECDPLVR+GLE+TARHMVIPYM
Sbjct: 180  PPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYM 239

Query: 2519 PMLVPPVNWTGYDKGAYLFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKW 2340
            PMLVPP+NWTGYDKGAYLFLPSYVMR HGA+QQREA+KR  R  LEP FEAL+TLGNTKW
Sbjct: 240  PMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKW 299

Query: 2339 RVNKRVLSVIDRIWASGGRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSER 2160
            R+NKRVL VIDRIWASGGR                DTED AEIR WKWK+++ KKENSER
Sbjct: 300  RINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSER 359

Query: 2159 HSQRCDIELKLAVARKMKDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 1980
            HSQRCDIELKLAVARKMKDE+ FFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR
Sbjct: 360  HSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 419

Query: 1979 PLGKLGLQWLKIHIANLYAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAED 1800
            PLGK GL+WLKIH+AN+YAGGVDKLS +GRV FTENHL+DIFDSADRPLEGRRWWL AED
Sbjct: 420  PLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAED 479

Query: 1799 PFQCLAACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGD 1620
            PFQCLA CINLSEALRSSSPETTIS+MPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG+
Sbjct: 480  PFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGE 539

Query: 1619 KPADVYSGIAARVLEIMRRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYI 1440
            KPADVYSGIAARVL+IM+RDA+KDPATEPNALRARLLI+QVDRKLVKQTVMTSVYGVTYI
Sbjct: 540  KPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYI 599

Query: 1439 GARDQIKRRLKGRGAITDETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIAS 1260
            GARDQIKRRLK R AI DE E+F ASCYAAK TLTALGEMF+AARSIMSWLGDCAKVIAS
Sbjct: 600  GARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIAS 659

Query: 1259 ENHAVRWTTPLGLPVVQPYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSL 1080
            ENH VRW TPLGLPVVQPYRK GRHLIKTSLQVL+LQRETDKVMVKRQRTAFPPNFVHSL
Sbjct: 660  ENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSL 719

Query: 1079 DGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEF 900
            DGSHMMMTA+AC+KAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY  PILENLLE F
Sbjct: 720  DGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGF 779

Query: 899  RQSFPTLSFPPLPERGDFDLREVLESTYFFN 807
            ++SFPTL+FPPLPERGDFDLREVLES YFFN
Sbjct: 780  QKSFPTLNFPPLPERGDFDLREVLESPYFFN 810


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score = 1399 bits (3621), Expect = 0.0
 Identities = 683/854 (79%), Positives = 750/854 (87%), Gaps = 1/854 (0%)
 Frame = -3

Query: 3365 RQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFL 3186
            +Q K +GGMG GKY LLRRRQ+++ETEAWE+AAKEY+ELL DMCEQKLAPNLPYMKSLFL
Sbjct: 153  KQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFL 212

Query: 3185 GWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCAR 3006
            GWFEPLRD IA EQ+LC  GKNRGA AP+FD LPA+MMAVITMHKLMG LMTGG  G AR
Sbjct: 213  GWFEPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSAR 272

Query: 3005 VVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADA-KQQERLRKKVTNLMK 2829
            VV AA  IGEAIEHEARIHRFLE+TKK        D  +T  D  K++ER+RKKV  LMK
Sbjct: 273  VVQAASHIGEAIEHEARIHRFLEKTKKSN--ALSGDLEDTPGDIMKERERVRKKVKILMK 330

Query: 2828 KQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAF 2649
            KQKLQQVR+IVK+QDD KPWGQD   KVG RLI++LMETAYIQPP DQ  D  PDIRPAF
Sbjct: 331  KQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAF 390

Query: 2648 RHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAY 2469
             H+LKTV  +T K S+RYGVI+CDPLVR+GL++TARHMVIPYMPMLVPP +W GYDKGAY
Sbjct: 391  VHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448

Query: 2468 LFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASG 2289
            LFLPSY+MRTHGAKQQREAVKR  + QLEPVF+ALDTLGNTKWR+N++VL ++DRIWASG
Sbjct: 449  LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508

Query: 2288 GRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKM 2109
            GR                D ED A+IR WKWK+K  KKEN ERHSQRCDIELKLAVARKM
Sbjct: 509  GRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKM 568

Query: 2108 KDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANL 1929
            KDE+ F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK GL+WLKIH+AN+
Sbjct: 569  KDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANV 628

Query: 1928 YAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRS 1749
            Y GGVDKLS +GRV F+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLA CIN++EALRS
Sbjct: 629  YGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRS 688

Query: 1748 SSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIM 1569
             SPET ISYMP+HQDGSCNGLQHYAALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IM
Sbjct: 689  PSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIM 748

Query: 1568 RRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAIT 1389
            +RDA KDPA +PN +RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RG I 
Sbjct: 749  KRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIE 808

Query: 1388 DETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQ 1209
            D+ ELF A+CYAAK TLTALGEMF+AARSIMSWLGDCAK+IA ENH VRWTTPLGLPVVQ
Sbjct: 809  DDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQ 868

Query: 1208 PYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGL 1029
            PYRK GRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACK++GL
Sbjct: 869  PYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGL 928

Query: 1028 NFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGD 849
            +FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILENLLE F+QSFP L FPPLPERGD
Sbjct: 929  SFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGD 988

Query: 848  FDLREVLESTYFFN 807
            FDLREVLES YFFN
Sbjct: 989  FDLREVLESPYFFN 1002


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
            gi|462411068|gb|EMJ16117.1| hypothetical protein
            PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score = 1399 bits (3620), Expect = 0.0
 Identities = 677/847 (79%), Positives = 747/847 (88%), Gaps = 1/847 (0%)
 Frame = -3

Query: 3344 GMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLR 3165
            GMGQGKY +L+RRQ++IETEAWE+AAKEY+EL+ DMCEQKLAPNLPYMKSLFLGWFEPLR
Sbjct: 180  GMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLR 239

Query: 3164 DCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCARVVHAACQ 2985
            + I KEQ+LC+ GKN+ AYAPY D LPADMM+VITMHKLMGLLMTGGEHG  RVV AAC 
Sbjct: 240  NAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVAAACT 299

Query: 2984 IGEAIEHEARIHRFLERT-KKKTDKGKRADGGETDADAKQQERLRKKVTNLMKKQKLQQV 2808
            IGEAIE E RIH+FLE T KKK DK +  + GE+DA  K++E+L KKVTNLMKKQKL+ V
Sbjct: 300  IGEAIEQEVRIHKFLEMTRKKKVDKDQ--ENGESDAAKKEREKLNKKVTNLMKKQKLKAV 357

Query: 2807 RQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAFRHSLKTV 2628
            R IV + D  K W  +A+AKVGSRLIELL +TA+IQPP DQ ADG PDIRPAF H+ +TV
Sbjct: 358  RGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRTV 417

Query: 2627 TKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAYLFLPSYV 2448
             KD +  S+RYGVIECDPLV +GLE+TARHMVIPYMPMLVPP+NWTGYDKG Y FLPSYV
Sbjct: 418  AKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPSYV 477

Query: 2447 MRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASGGRXXXXX 2268
            MR HGA+QQREA+KRT R QLEPVF+ALD LGNT+WRVNKRVLSV+DRIWASGG      
Sbjct: 478  MRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGHLADLV 537

Query: 2267 XXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKMKDEEWFF 2088
                       DTED   ++ WKWK+K+ KKEN ERHSQRCD ELKLAVARKMKDEE F+
Sbjct: 538  DRNDVPLPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDTELKLAVARKMKDEEGFY 597

Query: 2087 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANLYAGGVDK 1908
            YPHNLDFRGRAYPMHPYLNHLGSD+CRGILEF EGRPLGK GL WLKIH+ANLYAGGVDK
Sbjct: 598  YPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHLANLYAGGVDK 657

Query: 1907 LSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETTI 1728
            LS +GR+ FTENHLDDIFDS D+PLEGRRWWL AEDPFQCLA CINL+EALRSSSPET I
Sbjct: 658  LSLEGRIAFTENHLDDIFDSVDKPLEGRRWWLKAEDPFQCLAVCINLAEALRSSSPETFI 717

Query: 1727 SYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRRDAEKD 1548
            S++PVHQDGSCNGLQHYAALGRDKLGAA+VNLV G+KPADVYSGIA RVLEIMRRDA+KD
Sbjct: 718  SHIPVHQDGSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVLEIMRRDAQKD 777

Query: 1547 PATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAITDETELFG 1368
            P   P ALRA+LLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RG+I+D+ E+FG
Sbjct: 778  PVVFPEALRAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGSISDDAEIFG 837

Query: 1367 ASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQPYRKFGR 1188
             +CYAAK+TLTALGEMF+AAR IMSWLG+CAK+IASEN  VRWTTPLGLPVVQPYRKFGR
Sbjct: 838  CACYAAKITLTALGEMFEAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKFGR 897

Query: 1187 HLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHD 1008
            HLIKTSLQVLTLQRET+KVMVKRQRTAFPPNFVHSLD SHMMMTAIACKKAGL+FAGVHD
Sbjct: 898  HLIKTSLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDSSHMMMTAIACKKAGLSFAGVHD 957

Query: 1007 SYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGDFDLREVL 828
            SYWTHACDVDEMN+ILREKFV+LYETPILENLLE F+QSFP L+FPPLPERGDFDLR+VL
Sbjct: 958  SYWTHACDVDEMNKILREKFVQLYETPILENLLESFQQSFPALTFPPLPERGDFDLRDVL 1017

Query: 827  ESTYFFN 807
            ES YFFN
Sbjct: 1018 ESPYFFN 1024


>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
            gi|548846502|gb|ERN05778.1| hypothetical protein
            AMTR_s00006p00254180 [Amborella trichopoda]
          Length = 1006

 Score = 1395 bits (3612), Expect = 0.0
 Identities = 682/847 (80%), Positives = 740/847 (87%)
 Frame = -3

Query: 3347 GGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPL 3168
            G MG+ KY  LR RQV+IETEAW+QAAKEY+EL+ DMCE KLAPNLPYMKSLFLGWFEPL
Sbjct: 160  GVMGKAKYLALRTRQVKIETEAWDQAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWFEPL 219

Query: 3167 RDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCARVVHAAC 2988
            RD IA EQ   K GKN+GAYAPYF  LPADMM+VITMHKLMGLLMTG ++G  R+V AAC
Sbjct: 220  RDIIASEQASYKAGKNKGAYAPYFMQLPADMMSVITMHKLMGLLMTGTDNGSTRLVQAAC 279

Query: 2987 QIGEAIEHEARIHRFLERTKKKTDKGKRADGGETDADAKQQERLRKKVTNLMKKQKLQQV 2808
            QIGEAIE E +IHRF E+TKKK+DK K+ DG E +   K++E LRK+VTNLMKKQKL QV
Sbjct: 280  QIGEAIEQEVKIHRFFEKTKKKSDKEKKLDGEEPNEGDKEKESLRKRVTNLMKKQKLHQV 339

Query: 2807 RQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAFRHSLKTV 2628
            R+IVK QDD KPWG D  AKVGSRLIELL+ETAY+QPPVDQSA+G PDIRPAFRH LKTV
Sbjct: 340  RKIVKGQDDAKPWGIDIHAKVGSRLIELLIETAYVQPPVDQSAEGPPDIRPAFRHILKTV 399

Query: 2627 TKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAYLFLPSYV 2448
            TK+ QK  +RYGVIECDPL+ +GLE+TARHMVIPYMPMLVPPV WTGYD+G +LFLPSYV
Sbjct: 400  TKNDQKIRRRYGVIECDPLICKGLEKTARHMVIPYMPMLVPPVKWTGYDRGGHLFLPSYV 459

Query: 2447 MRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASGGRXXXXX 2268
            MR HGA+QQR A+K   R QL  V+EALDTLG TKWRVNKRVL VIDRIWA GGR     
Sbjct: 460  MRIHGARQQRYAIKHAPRKQLLKVYEALDTLGTTKWRVNKRVLGVIDRIWADGGRLADLV 519

Query: 2267 XXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKMKDEEWFF 2088
                       DTED A+IR WKW +K A+K+NSE HSQRCD ELKL VAR+MKDEE F 
Sbjct: 520  DREDVAIPEKPDTEDEAKIREWKWLVKGARKKNSELHSQRCDTELKLNVARRMKDEEGFH 579

Query: 2087 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANLYAGGVDK 1908
            YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK GL+WLKIH+ANLYAGGVDK
Sbjct: 580  YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDK 639

Query: 1907 LSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPETTI 1728
            LS DGR+ F ENHL+DIFDSADRPLEG RWWLGAEDPFQCLAAC+NLSEALRSSSP+TTI
Sbjct: 640  LSYDGRLEFVENHLEDIFDSADRPLEGGRWWLGAEDPFQCLAACVNLSEALRSSSPDTTI 699

Query: 1727 SYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRRDAEKD 1548
            S+MPVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVYSGIA RVL+IMRRD++KD
Sbjct: 700  SHMPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYSGIAERVLDIMRRDSQKD 759

Query: 1547 PATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAITDETELFG 1368
            P ++PN  RA+LL+NQVDRKLVKQTVMTSVYGVTY+GARDQI RRLK RGAITDE ELF 
Sbjct: 760  PTSDPNVARAKLLLNQVDRKLVKQTVMTSVYGVTYVGARDQIMRRLKERGAITDEKELFS 819

Query: 1367 ASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQPYRKFGR 1188
            ASCY AKVTLTALGEMFQAARSIMSWLGDCAKVIASEN  VRWTTPLGLPVVQPYRK GR
Sbjct: 820  ASCYTAKVTLTALGEMFQAARSIMSWLGDCAKVIASENETVRWTTPLGLPVVQPYRKLGR 879

Query: 1187 HLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHD 1008
            HLIKTSLQVL L+ ETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHD
Sbjct: 880  HLIKTSLQVLALRCETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHD 939

Query: 1007 SYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGDFDLREVL 828
            SYWTHACDVDEMNRILREKFVELY TPILENLL  F++ FP LSFPPLP RGDFDL+EVL
Sbjct: 940  SYWTHACDVDEMNRILREKFVELYSTPILENLLRNFQELFPKLSFPPLPARGDFDLKEVL 999

Query: 827  ESTYFFN 807
            +S YFFN
Sbjct: 1000 DSPYFFN 1006


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score = 1392 bits (3603), Expect = 0.0
 Identities = 674/849 (79%), Positives = 750/849 (88%), Gaps = 3/849 (0%)
 Frame = -3

Query: 3344 GMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLFLGWFEPLR 3165
            GM   +Y  LRRRQ+R+ETEAWEQAAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLR
Sbjct: 129  GMTYHRYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLR 188

Query: 3164 DCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCARVVHAACQ 2985
            D I  EQEL     +R ++ PYF+ LPADMMAVITMHKLMGLLMTG   G  RV+ AACQ
Sbjct: 189  DQIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 248

Query: 2984 IGEAIEHEARIHRFLERTKKKTDKGKRAD---GGETDADAKQQERLRKKVTNLMKKQKLQ 2814
            IGEAIEHE RI+RFLE+T+KK++K    +    G+TD  AK+Q+RLRKKVT+LMKKQKL+
Sbjct: 249  IGEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTDI-AKEQQRLRKKVTDLMKKQKLR 307

Query: 2813 QVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPAFRHSLK 2634
            QVR IVK QD+ +PWGQD QAKVGSRLIEL M+TA+IQPP  QS+DG PDIRPAFRH ++
Sbjct: 308  QVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMR 367

Query: 2633 TVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGAYLFLPS 2454
            TV K+ QK+S+RYGVI+CDPLVRQGL+RTA+HMVIPYMPML+PP+ WTGYDKGA+LFLPS
Sbjct: 368  TVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPS 427

Query: 2453 YVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWASGGRXXX 2274
            YVMRTHGA+QQREAVKR  R Q++ VFEAL+TLG+TKWRVNKRVLS++DRIW+SGGR   
Sbjct: 428  YVMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLAD 487

Query: 2273 XXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARKMKDEEW 2094
                         DTED   I+NWKW L++ KKENSERHSQRCD+ELKLAVARKMKDEE 
Sbjct: 488  LVDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEG 547

Query: 2093 FFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIANLYAGGV 1914
            F+YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK GL WLKIH+ANLYAGGV
Sbjct: 548  FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGV 607

Query: 1913 DKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALRSSSPET 1734
            DKLS DGRV FTENHL++IFDSADRPLEG+RWWLGAEDPFQCLA C+NL+EALRSSSPET
Sbjct: 608  DKLSYDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSPET 667

Query: 1733 TISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEIMRRDAE 1554
            TIS++PVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+KPADVY+GIA RVLEIMR DA+
Sbjct: 668  TISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQ 727

Query: 1553 KDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAITDETEL 1374
            KDP+ +P+  RARL+++QVDRKLVKQTVMTSVYGVTY+GARDQIKRRLK RG I DE EL
Sbjct: 728  KDPSIDPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGVIPDEAEL 787

Query: 1373 FGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVVQPYRKF 1194
            FGASCYAAKVTLTALGEMFQAAR IM+WLGDCAKVIA EN  VRWTTPLGLPVVQPYRK 
Sbjct: 788  FGASCYAAKVTLTALGEMFQAARGIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 847

Query: 1193 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGV 1014
            GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA+ACK+ GLNFAGV
Sbjct: 848  GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 907

Query: 1013 HDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERGDFDLRE 834
            HDSYWTHACDVD MN+ILREKFVELY+TPILENLLE F +SFP L FPPLPERGDFD++E
Sbjct: 908  HDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKE 967

Query: 833  VLESTYFFN 807
            VLES YFFN
Sbjct: 968  VLESPYFFN 976


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1391 bits (3600), Expect = 0.0
 Identities = 672/855 (78%), Positives = 761/855 (89%), Gaps = 1/855 (0%)
 Frame = -3

Query: 3368 QRQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 3189
            ++Q  L  GMG  KYQ L+RRQV++ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLF
Sbjct: 168  RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLF 227

Query: 3188 LGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCA 3009
            LGWFEPLRD IA+EQELC  GK++ AYA YF  LPADMMAVITMHKLMGLLMTGG+HG A
Sbjct: 228  LGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTA 287

Query: 3008 RVVHAACQIGEAIEHEARIHRFLERTKK-KTDKGKRADGGETDADAKQQERLRKKVTNLM 2832
            RVV AA  IG+AIE E RIH FLE+TKK K +K K+ + GE     ++QE+LRKKVTNLM
Sbjct: 288  RVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVT--QEQEKLRKKVTNLM 345

Query: 2831 KKQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPA 2652
            KKQKL+ V QIV+ QDD KPWGQDA+AKVGSRLI+LL++TAYIQPP +Q A   PDIRPA
Sbjct: 346  KKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPA 405

Query: 2651 FRHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGA 2472
            F HS++TV K+T+  S+RYG+I+CD LV +GLERTARHMVIPYMPMLVPPV WTGYDKG 
Sbjct: 406  FVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGG 465

Query: 2471 YLFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWAS 2292
            +L+LPSYVMRTHGA+QQREAVKR SR QL+PVFEALDTLGNTKWR+NKRVLSV+DRIWA 
Sbjct: 466  HLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAG 525

Query: 2291 GGRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARK 2112
            GGR                DTED A    W+WK+K+ KKEN ERHSQRCDIELKLAVARK
Sbjct: 526  GGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARK 585

Query: 2111 MKDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIAN 1932
            MKDEE FFYPHN+DFRGRAYPMHP+LNHLGSD+CRG+LEFAEGRPLG+ GL+WLKIH+AN
Sbjct: 586  MKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLAN 645

Query: 1931 LYAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALR 1752
            L+AGGV+KLS +GR+ FTENH+DDIFDS+D+PLEGRRWWL AEDPFQCLA CINLSEA+R
Sbjct: 646  LFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVR 705

Query: 1751 SSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEI 1572
            SSSPET++S++PVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPADVYSGIAARVL+I
Sbjct: 706  SSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDI 765

Query: 1571 MRRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAI 1392
            M+RDA++DPA  P+A+RAR+L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RGAI
Sbjct: 766  MKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAI 825

Query: 1391 TDETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVV 1212
             D++ELFGA+CYAAKVTLTALGEMF+AARSIM+WLG+CAK+IASEN  VRWTTPLGLPVV
Sbjct: 826  ADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVV 885

Query: 1211 QPYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAG 1032
            QPYRK GRHLIKTSLQ+LTLQRET+KVMVKRQRTAFPPNF+HSLDGSHMMMTA+AC++AG
Sbjct: 886  QPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAG 945

Query: 1031 LNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERG 852
            LNFAGVHDSYWTHACDVD++NRILREKFVELYE PILE LLE F+ S+PTL FPPLPERG
Sbjct: 946  LNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERG 1005

Query: 851  DFDLREVLESTYFFN 807
            DFD+R+VLES YFFN
Sbjct: 1006 DFDMRDVLESPYFFN 1020


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score = 1389 bits (3595), Expect = 0.0
 Identities = 675/856 (78%), Positives = 754/856 (88%), Gaps = 2/856 (0%)
 Frame = -3

Query: 3368 QRQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 3189
            + + ++  GMG GKY++L+ RQV+IETEAWE+AA EY+ELL DMCEQKLAPNLPYMKSLF
Sbjct: 171  RNRRRVARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLF 230

Query: 3188 LGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCA 3009
            LGWFEPLRD IAKEQE C++ K++ AYAPYFD LPADMMAVITMHKLMGLLMTGGEHG A
Sbjct: 231  LGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA 290

Query: 3008 RVVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRAD--GGETDADAKQQERLRKKVTNL 2835
            RVV AAC IG+AIE E RIH+FLE+TKKK +   + D  G E++    +QE+LRKKVT+L
Sbjct: 291  RVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 350

Query: 2834 MKKQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRP 2655
            +KKQKL  VR+IVK QDD KPWGQDA+AKVGSR+IELL +TAYIQ P DQ AD  PDI P
Sbjct: 351  IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFP 410

Query: 2654 AFRHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKG 2475
            AF H+L+TV+K+T+  SK+YGVIEC+PLV +GLERTARHMVIPYMPMLVPPV WTGYDKG
Sbjct: 411  AFTHALRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 470

Query: 2474 AYLFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWA 2295
            A+ FLPSYVMRTHGAKQQR+ VKRT + QLEPVFEALDTLGNTKWRVN RVLSV+DRIW+
Sbjct: 471  AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 530

Query: 2294 SGGRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVAR 2115
             GGR                +TED A++R W+WK++  KKEN ERHSQRCDIELKL+VAR
Sbjct: 531  CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 590

Query: 2114 KMKDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIA 1935
            KMKDEE F+YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGK GL WLKIH+A
Sbjct: 591  KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 650

Query: 1934 NLYAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEAL 1755
            NLYAGGVDKLS++GR+ FTENHLDDIFDSAD+PLEGRRWWL AEDPFQCLA CINL+EAL
Sbjct: 651  NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 710

Query: 1754 RSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLE 1575
            RSSSPET IS++PVHQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVYSGIAARVL 
Sbjct: 711  RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 770

Query: 1574 IMRRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGA 1395
            I++RDA++DPA  P+ALRA+LL++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RGA
Sbjct: 771  IIQRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 830

Query: 1394 ITDETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPV 1215
              +E ELFGASCYAAKVTLTALGEMFQAAR IMSWLG+CAK+IASEN  VRWTTPLGLPV
Sbjct: 831  PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 890

Query: 1214 VQPYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKA 1035
            VQPYRK GRH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+KA
Sbjct: 891  VQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 950

Query: 1034 GLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPER 855
            GL FAGVHDSYWTHACDVDEMNRILREKFVELYE PILENLL+ F++SFP L FPPLPER
Sbjct: 951  GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPILENLLDSFQKSFPKLVFPPLPER 1010

Query: 854  GDFDLREVLESTYFFN 807
            GDFDLREVL S YFFN
Sbjct: 1011 GDFDLREVLGSPYFFN 1026


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
            gi|557533045|gb|ESR44228.1| hypothetical protein
            CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score = 1388 bits (3593), Expect = 0.0
 Identities = 675/856 (78%), Positives = 752/856 (87%), Gaps = 2/856 (0%)
 Frame = -3

Query: 3368 QRQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 3189
            + + ++  GMG GKY++L+ RQV+IETEAWEQAA EY+ELL DMCEQKLAPNLPYMKSLF
Sbjct: 175  RNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLF 234

Query: 3188 LGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCA 3009
            LGWFEPLRD IAKEQE C++ K++ AYAPYFD LPADMMAVITMHKLMGLLMTGGEHG A
Sbjct: 235  LGWFEPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRA 294

Query: 3008 RVVHAACQIGEAIEHEARIHRFLERTKKKTDKGKRAD--GGETDADAKQQERLRKKVTNL 2835
            RVV AAC IG+AIE E RIH+FLE+TKKK +   + D  G E++    +QE+LRKKVT+L
Sbjct: 295  RVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDL 354

Query: 2834 MKKQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRP 2655
            +KKQKL  VR+IVK QDD KPWGQDA+AKVGSR+IELL +TAYIQ P DQ  D  PDI P
Sbjct: 355  IKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFP 414

Query: 2654 AFRHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKG 2475
            AF H+L+TV+K+T+  SK+YGVIEC+PLV +GLERTARHMVIPYMPMLVPPV WTGYDKG
Sbjct: 415  AFTHTLRTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKG 474

Query: 2474 AYLFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWA 2295
            A+ FLPSYVMRTHGAKQQR+ VKRT + QLEPVFEALDTLGNTKWRVN RVLSV+DRIW+
Sbjct: 475  AHFFLPSYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWS 534

Query: 2294 SGGRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVAR 2115
             GGR                +TED A++R W+WK++  KKEN ERHSQRCDIELKL+VAR
Sbjct: 535  CGGRLADLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVAR 594

Query: 2114 KMKDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIA 1935
            KMKDEE F+YPHN+DFRGRAYPMHPYLNHLGSDLCRGILEFAEGR LGK GL WLKIH+A
Sbjct: 595  KMKDEEGFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLA 654

Query: 1934 NLYAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEAL 1755
            NLYAGGVDKLS++GR+ FTENHLDDIFDSAD+PLEGRRWWL AEDPFQCLA CINL+EAL
Sbjct: 655  NLYAGGVDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEAL 714

Query: 1754 RSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLE 1575
            RSSSPET IS++PVHQDGSCNGLQHYAALGRD LGAAAVNLVA +KPADVYSGIAARVL 
Sbjct: 715  RSSSPETFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLV 774

Query: 1574 IMRRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGA 1395
            I+RRDA++DPA  P+ALRA+LL++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RGA
Sbjct: 775  IIRRDAQRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGA 834

Query: 1394 ITDETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPV 1215
              +E ELFGASCYAAKVTLTALGEMFQAAR IMSWLG+CAK+IASEN  VRWTTPLGLPV
Sbjct: 835  PMEEAELFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPV 894

Query: 1214 VQPYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKA 1035
            VQPYRK GRH +KTSLQ+LTLQRET+KVMVKRQRTAFPPNFVHSLDGSHMMMTA+AC+KA
Sbjct: 895  VQPYRKLGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKA 954

Query: 1034 GLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPER 855
            GL FAGVHDSYWTHACDVDEMNRILREKFVELYE PILENLL+ F++SFP L  PPLPER
Sbjct: 955  GLTFAGVHDSYWTHACDVDEMNRILREKFVELYEMPILENLLDSFQKSFPKLVLPPLPER 1014

Query: 854  GDFDLREVLESTYFFN 807
            GDFDLREVL S YFFN
Sbjct: 1015 GDFDLREVLGSPYFFN 1030


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial; AltName:
            Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 2B; Flags: Precursor
            gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
            RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 1387 bits (3591), Expect = 0.0
 Identities = 673/855 (78%), Positives = 759/855 (88%), Gaps = 1/855 (0%)
 Frame = -3

Query: 3368 QRQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 3189
            ++Q  L  GMG  KYQ L+RRQV++ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLF
Sbjct: 169  RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLF 228

Query: 3188 LGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCA 3009
            LGWFEPLRD IA+EQELC  GK++ AYA Y   LPADMMAVITMHKLMGLLMTGG+HG A
Sbjct: 229  LGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTA 288

Query: 3008 RVVHAACQIGEAIEHEARIHRFLERTKK-KTDKGKRADGGETDADAKQQERLRKKVTNLM 2832
            RVV AA  IG+AIE E RIH FLE+TKK K +K K+ + GE     ++QE+LRKKVTNLM
Sbjct: 289  RVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVT--QEQEKLRKKVTNLM 346

Query: 2831 KKQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPA 2652
            KKQKL+ V QIV+ QDD KPWGQDA+AKVGSRLIELL++TAYIQPP +Q A   PDIRPA
Sbjct: 347  KKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPA 406

Query: 2651 FRHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGA 2472
            F HS++TV K+T+  S+RYG+I+CD LV +GLERTARHMVIPYMPMLVPPV WTGYDKG 
Sbjct: 407  FLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGG 466

Query: 2471 YLFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWAS 2292
            +L+LPSYVMRTHGA+QQREAVKR SR QL+PVFEALDTLG+TKWR+NKRVLSVIDRIWA 
Sbjct: 467  HLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAG 526

Query: 2291 GGRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARK 2112
            GGR                DTED A    W+WK+K+ KKEN ERHSQRCDIELKLAVARK
Sbjct: 527  GGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARK 586

Query: 2111 MKDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIAN 1932
            MKDEE FFYPHN+DFRGRAYPMHP+LNHLGSD+CRG+L FAEGRPLG+ GL+WLKIH+AN
Sbjct: 587  MKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLAN 646

Query: 1931 LYAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALR 1752
            L+AGGV+KLS +GR+ FTENH+DDIFDSAD+PLEGRRWWL AEDPFQCLA CINLSEA+R
Sbjct: 647  LFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVR 706

Query: 1751 SSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEI 1572
            SSSPET+IS++PVHQDGSCNGLQHYAALGRD+LGAAAVNLVAG+KPADVYSGIAARVL+I
Sbjct: 707  SSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDI 766

Query: 1571 MRRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAI 1392
            M+RDA++DPA  P+A+RAR L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RGAI
Sbjct: 767  MKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAI 826

Query: 1391 TDETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVV 1212
             D++ELFGA+CYAAKVTLTALGEMF+AARSIM+WLG+CAK+IASEN  VRWTTPLGLPVV
Sbjct: 827  ADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVV 886

Query: 1211 QPYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAG 1032
            QPYRK GRHLIKTSLQ+LTLQ+ET+KVMVKRQRTAFPPNF+HSLDGSHMMMTA+AC++AG
Sbjct: 887  QPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAG 946

Query: 1031 LNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERG 852
            LNFAGVHDSYWTHACDVD++NRILREKFVELYETPILE LLE F+ S+PTL FPPLPERG
Sbjct: 947  LNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERG 1006

Query: 851  DFDLREVLESTYFFN 807
            DFDLR+VLES YFFN
Sbjct: 1007 DFDLRDVLESPYFFN 1021


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris] gi|17221595|dbj|BAB78465.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score = 1387 bits (3589), Expect = 0.0
 Identities = 669/855 (78%), Positives = 760/855 (88%), Gaps = 1/855 (0%)
 Frame = -3

Query: 3368 QRQTKLVGGMGQGKYQLLRRRQVRIETEAWEQAAKEYKELLEDMCEQKLAPNLPYMKSLF 3189
            ++Q  L  GMG  KYQ L+RRQV++ETEAWEQAAKEYKELL DMCEQKLAPNLPY+KSLF
Sbjct: 168  RKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLF 227

Query: 3188 LGWFEPLRDCIAKEQELCKLGKNRGAYAPYFDHLPADMMAVITMHKLMGLLMTGGEHGCA 3009
            LGWFEPLRD IA+EQELC  GK++ AYA YF  LPADMMAVITMHKLMGLLMTGG+HG A
Sbjct: 228  LGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTA 287

Query: 3008 RVVHAACQIGEAIEHEARIHRFLERTKK-KTDKGKRADGGETDADAKQQERLRKKVTNLM 2832
            RVV AA  IG+AIE E RIH FLE+TKK K +K K+ + GE     ++QE+LRKKVTNLM
Sbjct: 288  RVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVT--QEQEKLRKKVTNLM 345

Query: 2831 KKQKLQQVRQIVKEQDDVKPWGQDAQAKVGSRLIELLMETAYIQPPVDQSADGTPDIRPA 2652
            KKQKL+ V QIV+ QDD KPWGQDA+AKVGSRLI+LL++TAYIQPP +Q A   PDI PA
Sbjct: 346  KKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPA 405

Query: 2651 FRHSLKTVTKDTQKTSKRYGVIECDPLVRQGLERTARHMVIPYMPMLVPPVNWTGYDKGA 2472
            F HS++TV K+T+  S+RYG+I+CD LV +GLERTARHMVIPYMPMLVPPV WTGYDKG 
Sbjct: 406  FVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGG 465

Query: 2471 YLFLPSYVMRTHGAKQQREAVKRTSRTQLEPVFEALDTLGNTKWRVNKRVLSVIDRIWAS 2292
            +L+LPSYVMRTHGA+QQREAVKR SR QL+PVFEALDTLGNTKWR+NKRVLSV+DRIWA 
Sbjct: 466  HLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAG 525

Query: 2291 GGRXXXXXXXXXXXXXXXXDTEDAAEIRNWKWKLKAAKKENSERHSQRCDIELKLAVARK 2112
            GGR                DTED A +  W+WK+K+ KKEN ERHSQRCDIELKLAVARK
Sbjct: 526  GGRLADLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARK 585

Query: 2111 MKDEEWFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKLGLQWLKIHIAN 1932
            MKDEE FFYPHN+DFRGRAYPMHP+LNHLGSD+CRG+LEFAEGRPLG+ GL+WLKIH+AN
Sbjct: 586  MKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLAN 645

Query: 1931 LYAGGVDKLSNDGRVTFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLAACINLSEALR 1752
            L+AGGV+KLS +GR+ FTENH+DDIFDS+D+PLEGRRWWL AEDPFQCLA CINLSEA+R
Sbjct: 646  LFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVR 705

Query: 1751 SSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLEI 1572
            SSSPET++S++PVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG+KPA+ YSGIAARVL+I
Sbjct: 706  SSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDI 765

Query: 1571 MRRDAEKDPATEPNALRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKGRGAI 1392
            M+RDA++DPA  P+A+RAR+L+NQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK RGAI
Sbjct: 766  MKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAI 825

Query: 1391 TDETELFGASCYAAKVTLTALGEMFQAARSIMSWLGDCAKVIASENHAVRWTTPLGLPVV 1212
             D++ELFGA+CYAAKVTLTALGEMF+AARSIM+WLG+CAK+IASEN  VRWTTPLGLPVV
Sbjct: 826  ADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVV 885

Query: 1211 QPYRKFGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAG 1032
            QPYRK GRHLIKTSLQ+LTLQRET+KVMVKRQRTAFPPNF+HSLDGSHMMMTA+AC++AG
Sbjct: 886  QPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAG 945

Query: 1031 LNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLEEFRQSFPTLSFPPLPERG 852
            LNFAGVHDSYWTHACDVD++NRILREKFVELYE PILE LLE F+ S+PTL FPPLPERG
Sbjct: 946  LNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERG 1005

Query: 851  DFDLREVLESTYFFN 807
            DFD+R+VLES YFFN
Sbjct: 1006 DFDMRDVLESPYFFN 1020