BLASTX nr result
ID: Cocculus23_contig00009015
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00009015
(220 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, ... 94 2e-17
emb|CBI25651.3| unnamed protein product [Vitis vinifera] 92 7e-17
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I... 92 7e-17
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I... 91 2e-16
ref|XP_002527516.1| DNA-directed RNA polymerases I, II, and III ... 91 2e-16
gb|EYU26259.1| hypothetical protein MIMGU_mgv1a017602mg [Mimulus... 89 6e-16
ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, I... 88 1e-15
ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp.... 88 1e-15
emb|CBI25652.3| unnamed protein product [Vitis vinifera] 88 1e-15
ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutr... 87 2e-15
ref|XP_007023679.1| DNA directed RNA polymerase, 7 kDa subunit [... 87 2e-15
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ... 87 2e-15
gb|EEE62363.1| hypothetical protein OsJ_17152 [Oryza sativa Japo... 87 2e-15
gb|EEC78536.1| hypothetical protein OsI_18488 [Oryza sativa Indi... 87 2e-15
ref|NP_001172391.1| Os01g0530366 [Oryza sativa Japonica Group] g... 87 2e-15
ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, I... 86 5e-15
ref|XP_002264322.1| PREDICTED: DNA-directed RNA polymerases I, I... 86 5e-15
gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK257... 86 7e-15
ref|XP_004492394.1| PREDICTED: DNA-directed RNA polymerases I, I... 85 9e-15
ref|NP_198917.1| DNA-directed RNA polymerase NRPB12/NRPD12/NRPE1... 85 9e-15
>ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
12-like [Glycine max] gi|356560019|ref|XP_003548293.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 12 [Glycine max]
gi|567912183|ref|XP_006448405.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|593704333|ref|XP_007152540.1| hypothetical protein
PHAVU_004G138700g [Phaseolus vulgaris]
gi|255630274|gb|ACU15492.1| unknown [Glycine max]
gi|557551016|gb|ESR61645.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|561025849|gb|ESW24534.1| hypothetical protein
PHAVU_004G138700g [Phaseolus vulgaris]
Length = 51
Score = 94.0 bits (232), Expect = 2e-17
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 42
>emb|CBI25651.3| unnamed protein product [Vitis vinifera]
Length = 82
Score = 92.0 bits (227), Expect = 7e-17
Identities = 40/42 (95%), Positives = 40/42 (95%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRT 42
>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Vitis vinifera]
gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4 [Vitis
vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
product [Vitis vinifera]
Length = 51
Score = 92.0 bits (227), Expect = 7e-17
Identities = 40/42 (95%), Positives = 40/42 (95%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRT 42
>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cucumis sativus]
gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Cucumis sativus]
Length = 51
Score = 90.9 bits (224), Expect = 2e-16
Identities = 40/42 (95%), Positives = 40/42 (95%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRT
Sbjct: 1 MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRT 42
>ref|XP_002527516.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Ricinus communis] gi|223533156|gb|EEF34914.1|
DNA-directed RNA polymerases I, II, and III 7.0 kDa
polypeptide, putative [Ricinus communis]
Length = 51
Score = 90.9 bits (224), Expect = 2e-16
Identities = 40/42 (95%), Positives = 40/42 (95%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRT
Sbjct: 1 MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRT 42
>gb|EYU26259.1| hypothetical protein MIMGU_mgv1a017602mg [Mimulus guttatus]
gi|604334021|gb|EYU38219.1| hypothetical protein
MIMGU_mgv1a017594mg [Mimulus guttatus]
Length = 51
Score = 89.0 bits (219), Expect = 6e-16
Identities = 39/42 (92%), Positives = 39/42 (92%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPVSYICGDCG ENTLK GDVIQCRECGYRILYKKRT
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRT 42
>ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Solanum lycopersicum]
Length = 52
Score = 88.2 bits (217), Expect = 1e-15
Identities = 40/43 (93%), Positives = 41/43 (95%), Gaps = 1/43 (2%)
Frame = +3
Query: 93 MDAQP-EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD+QP EPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 1 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRT 43
>ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316495|gb|EFH46918.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 52
Score = 88.2 bits (217), Expect = 1e-15
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = +3
Query: 99 AQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
AQPEPV+Y+CGDCG ENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 4 AQPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRT 43
>emb|CBI25652.3| unnamed protein product [Vitis vinifera]
Length = 40
Score = 88.2 bits (217), Expect = 1e-15
Identities = 38/40 (95%), Positives = 38/40 (95%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKK 212
MD QPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKK
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKK 40
>ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutrema salsugineum]
gi|567131670|ref|XP_006392764.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|567131674|ref|XP_006392765.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089341|gb|ESQ30049.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089342|gb|ESQ30050.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089343|gb|ESQ30051.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
Length = 51
Score = 87.4 bits (215), Expect = 2e-15
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRT
Sbjct: 1 MDPQPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRT 42
>ref|XP_007023679.1| DNA directed RNA polymerase, 7 kDa subunit [Theobroma cacao]
gi|508779045|gb|EOY26301.1| DNA directed RNA polymerase,
7 kDa subunit [Theobroma cacao]
Length = 51
Score = 87.4 bits (215), Expect = 2e-15
Identities = 38/42 (90%), Positives = 39/42 (92%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPV+YICGDCG ENTLK GDVIQCRECGYRILYKKRT
Sbjct: 1 MDPQPEPVTYICGDCGQENTLKHGDVIQCRECGYRILYKKRT 42
>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
DNA-directed RNA polymerase I, II, and III polypeptide
isoform 2, partial [Zea mays]
Length = 100
Score = 87.0 bits (214), Expect = 2e-15
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +3
Query: 102 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
QPEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 53 QPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRT 91
>gb|EEE62363.1| hypothetical protein OsJ_17152 [Oryza sativa Japonica Group]
Length = 50
Score = 87.0 bits (214), Expect = 2e-15
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +3
Query: 102 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
QPEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 5 QPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRT 43
>gb|EEC78536.1| hypothetical protein OsI_18488 [Oryza sativa Indica Group]
Length = 87
Score = 87.0 bits (214), Expect = 2e-15
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +3
Query: 102 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
QPEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 5 QPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRT 43
>ref|NP_001172391.1| Os01g0530366 [Oryza sativa Japonica Group]
gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza
sativa Japonica Group] gi|615276275|ref|NP_001278509.1|
LOC100285004 [Zea mays] gi|242048352|ref|XP_002461922.1|
hypothetical protein SORBIDRAFT_02g010660 [Sorghum
bicolor] gi|242078439|ref|XP_002443988.1| hypothetical
protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|514726952|ref|XP_004956106.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Setaria italica] gi|195609858|gb|ACG26759.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195620974|gb|ACG32317.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195645780|gb|ACG42358.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195646246|gb|ACG42591.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|218188380|gb|EEC70807.1|
hypothetical protein OsI_02267 [Oryza sativa Indica
Group] gi|222618595|gb|EEE54727.1| hypothetical protein
OsJ_02072 [Oryza sativa Japonica Group]
gi|241925299|gb|EER98443.1| hypothetical protein
SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|241940338|gb|EES13483.1| hypothetical protein
SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa
Japonica Group] gi|255676033|dbj|BAH92949.1|
Os05g0151800 [Oryza sativa Japonica Group]
Length = 52
Score = 87.0 bits (214), Expect = 2e-15
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +3
Query: 102 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
QPEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 5 QPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRT 43
>ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Setaria italica]
Length = 52
Score = 85.9 bits (211), Expect = 5e-15
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = +3
Query: 102 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
QPEPVSY+CGDCG ENTLKPGDVIQCR+CGYRILYKKRT
Sbjct: 5 QPEPVSYLCGDCGSENTLKPGDVIQCRDCGYRILYKKRT 43
>ref|XP_002264322.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Vitis vinifera]
gi|298204812|emb|CBI25645.3| unnamed protein product
[Vitis vinifera]
Length = 51
Score = 85.9 bits (211), Expect = 5e-15
Identities = 38/42 (90%), Positives = 39/42 (92%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD+QPEPVSYICGDCG ENTLK GDVIQCRECGY ILYKKRT
Sbjct: 1 MDSQPEPVSYICGDCGQENTLKLGDVIQCRECGYCILYKKRT 42
>gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK25799.1| unknown
[Picea sitchensis] gi|148909877|gb|ABR18025.1| unknown
[Picea sitchensis] gi|224284970|gb|ACN40214.1| unknown
[Picea sitchensis] gi|224286085|gb|ACN40753.1| unknown
[Picea sitchensis]
Length = 53
Score = 85.5 bits (210), Expect = 7e-15
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = +3
Query: 99 AQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
A PEPVSYICGDCG EN+LKPGDVIQCRECGYRILYKKRT
Sbjct: 5 AAPEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRT 44
>ref|XP_004492394.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cicer arietinum]
Length = 51
Score = 85.1 bits (209), Expect = 9e-15
Identities = 35/42 (83%), Positives = 40/42 (95%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD QPEPVSY+CGDCG+ENT+K GDVI+CR+CGYRILYKKRT
Sbjct: 1 MDPQPEPVSYLCGDCGVENTIKSGDVIRCRDCGYRILYKKRT 42
>ref|NP_198917.1| DNA-directed RNA polymerase NRPB12/NRPD12/NRPE12 [Arabidopsis
thaliana] gi|75171496|sp|Q9FLM8.1|NRPBC_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit
12; AltName: Full=DNA-directed RNA Polymerase II subunit
K gi|9759147|dbj|BAB09703.1| unnamed protein product
[Arabidopsis thaliana] gi|15028303|gb|AAK76628.1|
unknown protein [Arabidopsis thaliana]
gi|19310615|gb|AAL85038.1| unknown protein [Arabidopsis
thaliana] gi|21618239|gb|AAM67289.1| DNA directed RNA
polymerase II polypeptide K [Arabidopsis thaliana]
gi|332007242|gb|AED94625.1| DNA-directed RNA polymerase
NRPB12/NRPD12/NRPE12 [Arabidopsis thaliana]
Length = 51
Score = 85.1 bits (209), Expect = 9e-15
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +3
Query: 93 MDAQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 218
MD PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRT
Sbjct: 1 MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRT 42