BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00008567
         (545 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277679.1| PREDICTED: transcription initiation factor I...   133   3e-29
ref|XP_006660890.1| PREDICTED: transcription initiation factor I...   128   1e-27
ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g...   128   1e-27
ref|XP_004957467.1| PREDICTED: transcription initiation factor I...   126   3e-27
gb|EMT25381.1| Transcription initiation factor IIB [Aegilops tau...   126   3e-27
ref|XP_003578512.1| PREDICTED: transcription initiation factor I...   126   3e-27
dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]    126   3e-27
ref|NP_001149721.1| transcription initiation factor IIB [Zea may...   126   3e-27
gb|ACF84713.1| unknown [Zea mays]                                     126   3e-27
gb|ACF81664.1| unknown [Zea mays] gi|414886465|tpg|DAA62479.1| T...   126   3e-27
ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [S...   125   7e-27
ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   124   2e-26
emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]   124   2e-26
ref|XP_007015120.1| Cyclin-like family protein [Theobroma cacao]...   124   2e-26
ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   123   3e-26
ref|XP_002513521.1| transcription initiation factor iib, putativ...   121   1e-25
ref|XP_004493474.1| PREDICTED: transcription initiation factor I...   120   2e-25
ref|XP_004304334.1| PREDICTED: transcription initiation factor I...   120   2e-25
ref|NP_001238343.1| transcription initiation factor IIB [Glycine...   120   2e-25
ref|XP_003519077.1| PREDICTED: transcription initiation factor I...   120   2e-25

>ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
           gi|297734946|emb|CBI17180.3| unnamed protein product
           [Vitis vinifera]
          Length = 314

 Score =  133 bits (335), Expect = 3e-29
 Identities = 65/70 (92%), Positives = 70/70 (100%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPIS+AAAVIYMITQLSDDKKLL+DISLATGVAEGTIRNSYKDLYPYASR+IP+S+AK
Sbjct: 245 RRSPISVAAAVIYMITQLSDDKKLLKDISLATGVAEGTIRNSYKDLYPYASRIIPSSYAK 304

Query: 365 EEDLRNLCSP 336
           EEDLRNLCSP
Sbjct: 305 EEDLRNLCSP 314


>ref|XP_006660890.1| PREDICTED: transcription initiation factor IIB-like [Oryza
           brachyantha]
          Length = 312

 Score =  128 bits (321), Expect = 1e-27
 Identities = 63/70 (90%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLSDDKK L+DISLATGVAEGTIRNSYKDLYPYASRLIP ++AK
Sbjct: 243 RRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 303 EEDLKNLCTP 312


>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
           gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
           Full=Transcription initiation factor IIB; AltName:
           Full=General transcription factor TFIIB
           gi|18481632|gb|AAL73491.1|AF464908_1 general
           transcription factor TFIIB [Oryza sativa]
           gi|50725809|dbj|BAD33339.1| Transcription initiation
           factor IIB [Oryza sativa Japonica Group]
           gi|50726577|dbj|BAD34211.1| Transcription initiation
           factor IIB [Oryza sativa Japonica Group]
           gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
           Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
           protein OsI_32170 [Oryza sativa Indica Group]
           gi|125606444|gb|EAZ45480.1| hypothetical protein
           OsJ_30135 [Oryza sativa Japonica Group]
           gi|347737122|gb|AEP20532.1| transcription factor [Oryza
           sativa Japonica Group]
          Length = 312

 Score =  128 bits (321), Expect = 1e-27
 Identities = 63/70 (90%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLSDDKK L+DISLATGVAEGTIRNSYKDLYPYASRLIP ++AK
Sbjct: 243 RRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 303 EEDLKNLCTP 312


>ref|XP_004957467.1| PREDICTED: transcription initiation factor IIB-like [Setaria
           italica]
          Length = 312

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/70 (88%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLS+DKK L+DISLATGVAEGTIRNSYKDLYPYASRLIP ++AK
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 303 EEDLKNLCTP 312


>gb|EMT25381.1| Transcription initiation factor IIB [Aegilops tauschii]
          Length = 198

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/70 (88%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLS+DKK L+DISLATGVAEGTIRNSYKDLYPYA+RLIP S+AK
Sbjct: 129 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNSYAK 188

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 189 EEDLKNLCTP 198


>ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
           distachyon]
          Length = 312

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/70 (88%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLS+DKK L+DISLATGVAEGTIRNSYKDLYPYASRLIP ++AK
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 303 EEDLKNLCTP 312


>dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 312

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/70 (88%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLS+DKK L+DISLATGVAEGTIRNSYKDLYPYA+RLIP S+AK
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNSYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 303 EEDLKNLCTP 312


>ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
           gi|195629762|gb|ACG36522.1| transcription initiation
           factor IIB [Zea mays] gi|414590059|tpg|DAA40630.1| TPA:
           transcription initiation factor IIB [Zea mays]
          Length = 312

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/70 (88%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLS+DKK L+DISLATGVAEGTIRNSYKDLYPYASRLIP ++AK
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 303 EEDLKNLCTP 312


>gb|ACF84713.1| unknown [Zea mays]
          Length = 198

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/70 (88%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLS+DKK L+DISLATGVAEGTIRNSYKDLYPYASRLIP ++AK
Sbjct: 129 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 188

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 189 EEDLKNLCTP 198


>gb|ACF81664.1| unknown [Zea mays] gi|414886465|tpg|DAA62479.1| TPA: hypothetical
           protein ZEAMMB73_928076 [Zea mays]
           gi|414886466|tpg|DAA62480.1| TPA: hypothetical protein
           ZEAMMB73_928076 [Zea mays]
          Length = 312

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/70 (88%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLS+DKK L+DISLATGVAEGTIRNSYKDLYPYASRLIP ++AK
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 303 EEDLKNLCTP 312


>ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
           gi|241923949|gb|EER97093.1| hypothetical protein
           SORBIDRAFT_02g031020 [Sorghum bicolor]
          Length = 312

 Score =  125 bits (314), Expect = 7e-27
 Identities = 61/70 (87%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIYMITQLS+DKK L+DISLATGVAEGTIRNSYKDLYPYA+RLIP ++AK
Sbjct: 243 RRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNTYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLC+P
Sbjct: 303 EEDLKNLCTP 312


>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|296088031|emb|CBI35314.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  124 bits (311), Expect = 2e-26
 Identities = 60/70 (85%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSP+SIAAAVIY+ITQLSD+KKLLRDIS+ATGVAEGTIRNSYKDLYP+ SR+IP+ +AK
Sbjct: 243 RRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISRIIPSWYAK 302

Query: 365 EEDLRNLCSP 336
           EEDLRNLCSP
Sbjct: 303 EEDLRNLCSP 312


>emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
          Length = 312

 Score =  124 bits (311), Expect = 2e-26
 Identities = 60/70 (85%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSP+SIAAAVIY+ITQLSD+KKLLRDIS+ATGVAEGTIRNSYKDLYP+ SR+IP+ +AK
Sbjct: 243 RRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISRIIPSWYAK 302

Query: 365 EEDLRNLCSP 336
           EEDLRNLCSP
Sbjct: 303 EEDLRNLCSP 312


>ref|XP_007015120.1| Cyclin-like family protein [Theobroma cacao]
           gi|508785483|gb|EOY32739.1| Cyclin-like family protein
           [Theobroma cacao]
          Length = 312

 Score =  124 bits (310), Expect = 2e-26
 Identities = 60/70 (85%), Positives = 69/70 (98%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIY+ITQLSDDKKLL+DISLATGVAEGTIRNSYKDL+P+AS+L+P+ +AK
Sbjct: 243 RRSPISIAAAVIYIITQLSDDKKLLKDISLATGVAEGTIRNSYKDLHPHASKLVPSWYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLCSP
Sbjct: 303 EEDLKNLCSP 312


>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|297739630|emb|CBI29812.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  123 bits (308), Expect = 3e-26
 Identities = 59/70 (84%), Positives = 68/70 (97%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSP+SIAAAVIY+ITQLSD+KKLLRDIS+ATGVAEGTIRNSYKDLYP+ S++IP+ +AK
Sbjct: 243 RRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISKIIPSWYAK 302

Query: 365 EEDLRNLCSP 336
           EEDLRNLCSP
Sbjct: 303 EEDLRNLCSP 312


>ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
           gi|223547429|gb|EEF48924.1| transcription initiation
           factor iib, putative [Ricinus communis]
          Length = 312

 Score =  121 bits (303), Expect = 1e-25
 Identities = 58/70 (82%), Positives = 67/70 (95%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAA+IYMITQLS++KKLL+DIS +TGVAEGTIRNSYKDLYPYASR++P+ +AK
Sbjct: 243 RRSPISIAAAIIYMITQLSEEKKLLKDISTSTGVAEGTIRNSYKDLYPYASRIVPSWYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL NLCSP
Sbjct: 303 EEDLINLCSP 312


>ref|XP_004493474.1| PREDICTED: transcription initiation factor IIB-like [Cicer
           arietinum]
          Length = 312

 Score =  120 bits (302), Expect = 2e-25
 Identities = 59/70 (84%), Positives = 66/70 (94%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIY+ITQLSDDKK L+DISLATGVAEGTIRNSYKDLYP+ S++IP  +AK
Sbjct: 243 RRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLCSP
Sbjct: 303 EEDLKNLCSP 312


>ref|XP_004304334.1| PREDICTED: transcription initiation factor IIB-like [Fragaria vesca
           subsp. vesca]
          Length = 312

 Score =  120 bits (302), Expect = 2e-25
 Identities = 59/70 (84%), Positives = 66/70 (94%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIY+ITQLSDDKK L+DISLATGVAEGTIRNSYKDLYP+ S++IP  +AK
Sbjct: 243 RRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAK 302

Query: 365 EEDLRNLCSP 336
           EEDL+NLCSP
Sbjct: 303 EEDLKNLCSP 312


>ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
           gi|1351222|sp|P48513.1|TF2B_SOYBN RecName:
           Full=Transcription initiation factor IIB; AltName:
           Full=General transcription factor TFIIB
           gi|945087|gb|AAB09756.1| transcription factor TFIIB
           [Glycine max]
          Length = 313

 Score =  120 bits (302), Expect = 2e-25
 Identities = 59/70 (84%), Positives = 66/70 (94%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIY+ITQLSDDKK L+DISLATGVAEGTIRNSYKDLYP+ S++IP  +AK
Sbjct: 244 RRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAK 303

Query: 365 EEDLRNLCSP 336
           EEDL+NLCSP
Sbjct: 304 EEDLKNLCSP 313


>ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
          Length = 314

 Score =  120 bits (302), Expect = 2e-25
 Identities = 59/70 (84%), Positives = 66/70 (94%)
 Frame = -1

Query: 545 RRSPISIAAAVIYMITQLSDDKKLLRDISLATGVAEGTIRNSYKDLYPYASRLIPTSFAK 366
           RRSPISIAAAVIY+ITQLSDDKK L+DISLATGVAEGTIRNSYKDLYP+ S++IP  +AK
Sbjct: 245 RRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAK 304

Query: 365 EEDLRNLCSP 336
           EEDL+NLCSP
Sbjct: 305 EEDLKNLCSP 314