BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00008561
         (830 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       199   8e-49
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   194   3e-47
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   186   9e-45
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   183   6e-44
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   182   1e-43
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   182   1e-43
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   182   1e-43
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   180   5e-43
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   180   5e-43
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      179   1e-42
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   179   1e-42
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   179   1e-42
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   178   3e-42
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   176   1e-41
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   176   1e-41
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   174   3e-41
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      174   3e-41
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   164   4e-38
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       163   8e-38
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   160   4e-37

>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  199 bits (507), Expect = 8e-49
 Identities = 97/172 (56%), Positives = 128/172 (74%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+Q+SGFP+HVSA+ VK+FLEG+TG GTVYA+KIR  K    R++A+VQF T + AE
Sbjct: 1   MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  L N RL+YG SYL  R MERDIVPKPRA L SL    LHFGCQ+S E+F  LW+  
Sbjct: 61  LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVG 120

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           +  V+FG G R++ F L++  V+Y+L+L Y+++WQI+LHRP G  AK+L+IQ
Sbjct: 121 NVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQ 172


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  194 bits (494), Expect = 3e-47
 Identities = 98/172 (56%), Positives = 128/172 (74%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QVS FP++V A+ VK FLE YTG  TVYALKIR+ K    RA+A+VQFT +  AE
Sbjct: 1   MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG-RAYAIVQFTKSTDAE 59

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  L N+RLYYG+SYL  R+ME DIVPKPR  L ++    LHFGCQVS+E+F+ LW+ +
Sbjct: 60  LIIRLTNQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEV 119

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           D  V FG G RK++FLLSH  V+Y+L+L Y++IWQI+LHRP    +K+L+IQ
Sbjct: 120 DVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQ 171


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
           max] gi|571439308|ref|XP_006574822.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
           max] gi|571439310|ref|XP_006574823.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
           max]
          Length = 1125

 Score =  186 bits (472), Expect = 9e-45
 Identities = 93/175 (53%), Positives = 121/175 (69%), Gaps = 4/175 (2%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+++ GFP  V+   VK F+E YTG+GTV+A+K+R  KG  PRAFA++QFTT   A 
Sbjct: 1   MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60

Query: 496 EIYL----INRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLW 663
            +      I R L YGTSYL  R+MERDIVP+PR  L SL+   L FGCQ+S  RF  LW
Sbjct: 61  SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120

Query: 664 KGIDAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           K  D +V FG G RK+ FL SH++V YKLELSY++IW+I+LHRP     ++L+IQ
Sbjct: 121 KKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQ 175


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  183 bits (465), Expect = 6e-44
 Identities = 91/173 (52%), Positives = 119/173 (68%), Gaps = 2/173 (1%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR FA+VQFT  + A 
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60

Query: 496 EIYL--INRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKG 669
           +I      RRLYYG SYL   ++++DIVPKPRA L +++   ++FGCQVS ++F +LW  
Sbjct: 61  QIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120

Query: 670 IDAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
            D  V FG G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQ
Sbjct: 121 QDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQ 173


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  182 bits (462), Expect = 1e-43
 Identities = 88/174 (50%), Positives = 122/174 (70%), Gaps = 3/174 (1%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GFPA V+A+ VKDFLE  TG GTVYALK+R  K    R +A+VQFTT + A+
Sbjct: 1   MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60

Query: 496 EIYLI---NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWK 666
            I  +     +L+YG SYL  R+ME+D VP+PR  + ++    LHFGC++S+E+F  LW+
Sbjct: 61  TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120

Query: 667 GIDAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           G++  V FGFG RK+ FLLSH   +Y+LEL Y++IW+I+LH P     K+L+IQ
Sbjct: 121 GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQ 174


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  182 bits (462), Expect = 1e-43
 Identities = 91/173 (52%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR FA+VQFT  + A 
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60

Query: 496 EIYL--INRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKG 669
           +I      R LYYG SYL   ++E+DIVPKPRA L +++   ++FGCQVS ++F +LW  
Sbjct: 61  QIITGAAERSLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120

Query: 670 IDAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
            D  V FG G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQ
Sbjct: 121 QDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQ 173


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  182 bits (462), Expect = 1e-43
 Identities = 90/172 (52%), Positives = 122/172 (70%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           MS+TV+VSGFP+  +A  V+ FLE +TG GTV ALKIR+ +    R +A+VQFTTT+ AE
Sbjct: 1   MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
           +I  L N RL+YG SYL  R M+RDI+P+PR+ L ++    LHFG Q S E+F ++W G 
Sbjct: 61  QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           +  V FG G RK+ F LSH+  +YKL L +++IWQI+LHRP G   K+L+IQ
Sbjct: 121 NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQ 172


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score =  180 bits (457), Expect = 5e-43
 Identities = 92/172 (53%), Positives = 120/172 (69%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+ +SGFP+HV+A  VK+FLEG+TG GTVYA+K+R  K    R +A+VQFT+   AE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  L N+RL+YG+SYL  R  E DIVPKPR  + +L    L FGCQVS E+F  LW+G 
Sbjct: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
             +V FG G RK+ F L +  V+Y+LELSY+ IWQIQLH P   + K+L+IQ
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQ 172


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  180 bits (457), Expect = 5e-43
 Identities = 92/172 (53%), Positives = 122/172 (70%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           MS+T+QV GFP+ VSA  +K+FLE YTG+GT+ AL+I++ +       A VQFT+ + AE
Sbjct: 1   MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  L  ++++YG +YL  R+M+ DI+PKPRA L S++   LHFGCQ+SDERF  LWK I
Sbjct: 61  FIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAI 120

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           +  V+FG G RK  F LSH   +YKLELSY++IWQIQL  P G   KFL+IQ
Sbjct: 121 NVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQ 172


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  179 bits (454), Expect = 1e-42
 Identities = 97/172 (56%), Positives = 121/172 (70%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GF + VSA  VK FLEGYTG  TVYALKIR+HK S  RAFA+VQFT +  A 
Sbjct: 1   MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  L N+RLYYG SYL  R+ME DIVPKPR  L ++    ++FGCQVS+E+F+ LWK  
Sbjct: 60  LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKAD 119

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           +  + FG G RK+EFLLS+    YKLEL Y++IWQI+L  P    +K L+IQ
Sbjct: 120 NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQ 171


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
           gi|548853371|gb|ERN11375.1| hypothetical protein
           AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  179 bits (453), Expect = 1e-42
 Identities = 95/176 (53%), Positives = 116/176 (65%), Gaps = 4/176 (2%)
 Frame = +1

Query: 313 EMSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGS-NPRAFAVVQFTTTKC 489
           E  RTVQVSGFP    A+ VK FLE  TG GTVY LKIR HK   N R FA+VQFTT+K 
Sbjct: 73  EGGRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKPNSRVFAIVQFTTSKS 132

Query: 490 AEEIYLIN---RRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSL 660
           AE IY +    + LY+G SY+ VR ME DIVP PR     L    L+FG Q+S+E F  L
Sbjct: 133 AEVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAIL 192

Query: 661 WKGIDAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           W   +  VEFGFG +K+ F L+H  VDYKL+L Y++IWQIQL RPG    ++L++Q
Sbjct: 193 WSNTNVKVEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQ 248


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  179 bits (453), Expect = 1e-42
 Identities = 91/173 (52%), Positives = 116/173 (67%), Gaps = 2/173 (1%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR FA+VQFT    A 
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNEIYAR 60

Query: 496 EIYL--INRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKG 669
           +I      RRLYYG SYL   ++E+DIVPKPRA L +++   ++FGCQVS +   +LW  
Sbjct: 61  QIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSA 120

Query: 670 IDAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
            D  V FG G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQ
Sbjct: 121 QDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQ 173


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  178 bits (451), Expect = 3e-42
 Identities = 89/171 (52%), Positives = 120/171 (70%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV G P++VSA  +K+FLE YTG+GT+ AL+I++ K       A VQFT+ + AE
Sbjct: 1   MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60

Query: 496 EIYLINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGID 675
            I  + ++L+YG +YL  R+M+ DI+PKPR  L S++   LHFG Q+S+ERF  LWK I+
Sbjct: 61  LIISLAKQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAIN 120

Query: 676 AVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
             V+FGFG RK  F LSH   +YKLELS ++IWQIQL  P G N KFL+IQ
Sbjct: 121 VSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQ 171


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  176 bits (445), Expect = 1e-41
 Identities = 89/172 (51%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR +A+VQFT+ +   
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 496 EIYLIN-RRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I      RLYYG SYL   ++E+DIVPKPRA L +++   + FGCQVS ++F +LW   
Sbjct: 61  LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           D  V FG G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQ
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQ 172


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
           gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
           Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
           AltName: Full=RNA-directed RNA polymerase 1
           gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
           [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
           putative RNA-directed RNA polymerase [Arabidopsis
           thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
           polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  176 bits (445), Expect = 1e-41
 Identities = 89/172 (51%), Positives = 116/172 (67%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR +A+VQFT+ +   
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 496 EIYLIN-RRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I      RLYYG SYL   ++E+DIVPKPRA L +++   + FGCQVS ++F +LW   
Sbjct: 61  LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           D  V FG G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQ
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQ 172


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
           gi|482575337|gb|EOA39524.1| hypothetical protein
           CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  174 bits (442), Expect = 3e-41
 Identities = 89/172 (51%), Positives = 117/172 (68%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GFP  V+   VK FLE  TG GTVYA+K+R+ K   PR FA+VQFT+ + A 
Sbjct: 1   MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGGPRVFAIVQFTSERHAR 60

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  +   RLYYG SYL   +ME+DIVPKPRA L S++   ++FGCQVS ++  +LW   
Sbjct: 61  LIITMAAERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSAH 120

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           +  V FG G RK+ F +S    DY+LELSY++IWQI LH P G ++KFL+IQ
Sbjct: 121 NVCVSFGTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQ 172


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  174 bits (442), Expect = 3e-41
 Identities = 95/172 (55%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GF + VSA  VK FLEGYTG  TVYALKIR+HK S  RAFA+VQFT +  A 
Sbjct: 1   MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAG 59

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  L N+RLYYG SYL  R+ME DIVPKPR  L ++    ++F C VS+E+F+ LWK  
Sbjct: 60  LIIRLANQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKAD 119

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           +  + FG G RK+EFLLS+    YKLEL Y++IWQI+L  P    +K L+IQ
Sbjct: 120 NVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQ 171


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  164 bits (415), Expect = 4e-38
 Identities = 85/172 (49%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M RT+QV GFP  V+A++VK FLE YTG+GTV AL+++  K    RA+A VQFT  +CAE
Sbjct: 1   MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGR-RAYARVQFTNIRCAE 59

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  L   RLYYGTSYL   + + DIV  PR     +    L+FGCQ+S  +F  LWKG 
Sbjct: 60  TIIDLAKNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWKGE 119

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
              V+FG G +K+ F L H+ V+YK++LSY++IWQI L+   G ++K L+IQ
Sbjct: 120 SVTVKFGTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQ 171


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  163 bits (412), Expect = 8e-38
 Identities = 87/172 (50%), Positives = 120/172 (69%), Gaps = 1/172 (0%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T+QV GFP  +SA+ VK FLE +TG+GTVYAL++++ KG   RAFA VQF   K AE
Sbjct: 1   MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGR-RAFAKVQFANNKSAE 59

Query: 496 EIY-LINRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGI 672
            I  L ++ LYYG SYL   +M+ DIV +PR  +  ++   L+FGCQ+SD++F  L    
Sbjct: 60  FIIDLASKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGSK- 117

Query: 673 DAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
           D  ++FG G +K+ F LSH   DYKL+LSY++IWQ+ LHRP G NA+FL++Q
Sbjct: 118 DVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQ 169


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
           gi|557094740|gb|ESQ35322.1| hypothetical protein
           EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  160 bits (406), Expect = 4e-37
 Identities = 82/174 (47%), Positives = 115/174 (66%), Gaps = 3/174 (1%)
 Frame = +1

Query: 316 MSRTVQVSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAE 495
           M +T++V GFP  VS + VK+FLE  TG GTVYA+K+R+ K   PR +A+VQFT  + A 
Sbjct: 1   MGKTIRVFGFPGGVSGEEVKNFLERETGSGTVYAIKVRQPKKGGPRVYAIVQFTNERHAR 60

Query: 496 EIYLINRR---LYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWK 666
             ++I R    LYYG SYL   ++E+DIVPKPRA L  ++   ++FGCQV+ ++   LW 
Sbjct: 61  --WIITRAEEGLYYGRSYLKASEVEQDIVPKPRASLHKISDLKIYFGCQVTPKKLSVLWS 118

Query: 667 GIDAVVEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 828
             +  V FG G RK+ F +S    DY+LEL Y++IW+I L+ P G  +KFL+IQ
Sbjct: 119 AQNVCVSFGTGMRKLHFSISWYEKDYRLELPYENIWRIDLYSPQGRASKFLVIQ 172