BLASTX nr result
ID: Cocculus23_contig00007800
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00007800
(2738 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1322 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 1317 0.0
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 1305 0.0
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 1294 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1268 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1266 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 1265 0.0
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 1243 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1235 0.0
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 1217 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1212 0.0
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 1208 0.0
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 1206 0.0
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 1205 0.0
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 1203 0.0
ref|XP_007153214.1| hypothetical protein PHAVU_003G016600g [Phas... 1200 0.0
ref|XP_007153213.1| hypothetical protein PHAVU_003G016600g [Phas... 1200 0.0
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 1199 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 1199 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 1190 0.0
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 1322 bits (3422), Expect = 0.0
Identities = 646/914 (70%), Positives = 763/914 (83%), Gaps = 2/914 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
K+L+IQ++GAPRI+QK + S + + P+ N+F + PDD W+R TDFT S+ IGQS+ +C
Sbjct: 169 KYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLC 228
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
+ELP EL +ENF YYKE+E +F+LE+GSA+S ++DLVPIV P G+ LPY IL+K+
Sbjct: 229 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 288
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIP--LAHIERALEKLYHLKECCYEPVKWLKEQYI 536
N LVQNGC+AGP L++ F+RL++P P ++ IE AL+KLYHLKECCYEP +WL +QY
Sbjct: 289 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 348
Query: 537 KYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRI 716
KY TS +P+ISLDDGLVY+ RV +TPS+VYF GPEINVSNRVLRHF DIDNF+RI
Sbjct: 349 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 408
Query: 717 SFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLR 896
SF+DED +++HSTDLSPR ++ TRIY RILS L NGI+IGD+KF+FLAFSSSQLR
Sbjct: 409 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 468
Query: 897 ENSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIP 1076
E+SAWMFAS GLTAA IREWMG+F +IRNVAKYAARLGQSFSSSKETL+V EI +IP
Sbjct: 469 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 528
Query: 1077 DIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSI 1256
D++I+ KYVFSDGIGK+SA+FARKVA KC ++ + PSAFQIRYGGYKGVVA DPTS
Sbjct: 529 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 588
Query: 1257 KKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQ 1436
KKLSLR+SM KY S+ KLDVL+WSK+QPCFLNRQLI+LLSTLG+ D IFEKKQ+EAV Q
Sbjct: 589 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 648
Query: 1437 LNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRN 1616
L+ LTDP+ AQEALE+MSPGEN N+LKE+L+CGYKPDAEPFLSMMLQ FRA KLLELR
Sbjct: 649 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 708
Query: 1617 KTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILE 1796
KTRIF+PNGRSMMGCLDETRTL Y QVF+Q+S G +Q G L ++ S QR FI++
Sbjct: 709 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE-SSLFSSSRSRQR-FIVQ 766
Query: 1797 GKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 1976
G VVVAKNPCLHPGDVRVL+AV+V LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV
Sbjct: 767 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 826
Query: 1977 SWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQ 2156
WD ELIPP Q PMDYTPA + +DHDV+IE+V+EYF NY+VNDSLGIIANAHTVFAD+
Sbjct: 827 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 886
Query: 2157 ELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIG 2336
E KA S+ C++LA FSIAVDFPKTGVPA+IPPHLYVKEYPDFM+K DKPTYES++VIG
Sbjct: 887 EPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 946
Query: 2337 KLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMD 2516
KLFR VKDIAP SCI+ FTKEVARRSYDPD+EV+GFED+I DA Y+KG +D+KLGNLMD
Sbjct: 947 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 1006
Query: 2517 YYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDL 2696
YYGIKTEAEIL G++MK+SKSFT RRDAE+IG+AV L+KEARAWF E+S EDD
Sbjct: 1007 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKS--GSDTEDDA 1064
Query: 2697 YAKASAWYHVTYHP 2738
YAKASAWYHVTYHP
Sbjct: 1065 YAKASAWYHVTYHP 1078
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1317 bits (3408), Expect = 0.0
Identities = 653/913 (71%), Positives = 752/913 (82%), Gaps = 1/913 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNY-FMDTPDDMWIRATDFTRSSCIGQSSAV 179
KFL+IQ++GAP+IY+K D P+L+Y F + PDD W+R DFT S IGQS A+
Sbjct: 167 KFLLIQLLGAPQIYEK---------DVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFAL 217
Query: 180 CLELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYK 359
CLELP +L RENF YYKEN+G+F+LESGS++SHN+ LVPI+ P G LP+ IL+K
Sbjct: 218 CLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFK 277
Query: 360 VNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIK 539
+N+LVQNGCL+GPTL+ +FFRL++P+ P++ IE ALEKLYHLKECCYEPV+WL EQY
Sbjct: 278 INTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRT 337
Query: 540 YRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRIS 719
Y G+P+ISLD GLVY+RRV ITP KVYF GPE+NVSNRVLR++ EDIDNF+R+S
Sbjct: 338 Y-VKKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVS 396
Query: 720 FVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLRE 899
F+DE+ E++HST +SPR E R T +YRRILS+L NGIVIGDKKFDFLAFSSSQLR+
Sbjct: 397 FLDENLEKIHSTVISPR--MSKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRD 454
Query: 900 NSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPD 1079
NSAWMFAS GLTAA IR WMGDF +IRNVAKYAARLGQSFSSSKETL V + EI IPD
Sbjct: 455 NSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPD 514
Query: 1080 IEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIK 1259
IEI YVFSDGIGKIS A +VA KC +SS PSAFQIRYGGYKGVVAVDPTS +
Sbjct: 515 IEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSR 574
Query: 1260 KLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQL 1439
KLSLR+SM KY S N LDVL+WSK+QP FLNRQLITLLSTLGVKDH+FEKKQ+ AVDQL
Sbjct: 575 KLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQL 634
Query: 1440 NMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNK 1619
+ L DPV+AQEALE+MSPGEN NVLKEMLMCGYKPDAEPFLSMMLQ FRA KLLELR K
Sbjct: 635 DTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTK 694
Query: 1620 TRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEG 1799
TRIFVPNGRSMMGCLDETRTLEY +VF+Q+S G +Q G + R + S FILEG
Sbjct: 695 TRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFRGSGSHHDNFILEG 753
Query: 1800 KVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVS 1979
K+VVAKNPCLHPGDVRVL AV+V LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV
Sbjct: 754 KIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVC 813
Query: 1980 WDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQE 2159
WD +LIPP QI PMDYTPAP V+DHDV IEEV+EYF NY+VNDSLGIIANAHTVFAD+E
Sbjct: 814 WDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKE 873
Query: 2160 LRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGK 2339
KA D C ELA+LFSIAVDFPKTGVPA+IP +L VKEYPDFM+K DKPTYES+ VIGK
Sbjct: 874 YDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGK 933
Query: 2340 LFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDY 2519
LFREVKDIAP I++FT++VAR+SYDPD+EV GFEDY+ DA YYK E+D+KLGNLMDY
Sbjct: 934 LFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDY 993
Query: 2520 YGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLY 2699
YGIKTE+EIL G++M++SKSF R+DAE+IG+AV L+KEAR WFN+ S + SE DD+Y
Sbjct: 994 YGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVY 1053
Query: 2700 AKASAWYHVTYHP 2738
AKASAWYHVTYHP
Sbjct: 1054 AKASAWYHVTYHP 1066
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 1305 bits (3377), Expect = 0.0
Identities = 644/912 (70%), Positives = 752/912 (82%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
K+L+IQ+ GAPRIY+K + S+G + ++P+LNYFMD PDD W+R TDFT+SSCIGQSS +C
Sbjct: 166 KYLLIQLFGAPRIYEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLC 225
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
LELP +L RENF YYKE+EG+F+LESGS++S N++LVPIV P+ G++LPY IL+K+
Sbjct: 226 LELPYYLQLPNFRENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKI 285
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIKY 542
N LVQNGC+ GP L+A F+RL+NP I +I+ ALEKLY+LKECC+EP KWL EQY Y
Sbjct: 286 NLLVQNGCIPGPALDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGY 345
Query: 543 RTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRISF 722
S + G+P ISLDDGLV +RRV ITPS+VYF GPEINVSNRVLRHFH+DIDNF+RI+F
Sbjct: 346 IASKKNPGSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITF 405
Query: 723 VDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLREN 902
VDE+ E++HSTDL R +R T IY RILS L NGIVIGDK+F+FLAFSSSQLREN
Sbjct: 406 VDEELEKIHSTDLLTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLREN 459
Query: 903 SAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPDI 1082
SAWMFAS GLTAA IR WMG+F KIRNVAKYAARLGQSFSSS ETL+V + EI +I D+
Sbjct: 460 SAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDV 519
Query: 1083 EIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIKK 1262
EI+ +G YVFSDGIGKISA FA+KVA KC + PSAFQIR GG+KGVVAVDPTS KK
Sbjct: 520 EIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKK 579
Query: 1263 LSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 1442
LSLR SM KY S+N KLDVL+WSK+QPCFLNRQLITLLSTLGV DH FE+KQ+E VDQLN
Sbjct: 580 LSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLN 639
Query: 1443 MTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNKT 1622
LTDP+ AQEALE+MSPGEN N+LKEML+CGY+PDAEPFLSMMLQ FRA KLLELR K+
Sbjct: 640 AILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKS 699
Query: 1623 RIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEGK 1802
RIFV NGRSMMGCLDETRTL+Y QVF+QVS + SEQR FI++GK
Sbjct: 700 RIFVANGRSMMGCLDETRTLDYGQVFVQVS----------------GSRSEQR-FIVQGK 742
Query: 1803 VVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 1982
VVVAKNPCLHPGDVRVL AV+V +LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV W
Sbjct: 743 VVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCW 802
Query: 1983 DPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQEL 2162
DPELIP QI PMDY+PAP ++H+V IEEV+EYF NY+VNDSLGIIANAHTVFAD+E
Sbjct: 803 DPELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREP 862
Query: 2163 RKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGKL 2342
RKA S C LA+LFSIAVDFPKTGVPA+IP L VKEYPDFM+K DKPTY+S +VIGKL
Sbjct: 863 RKAMSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKL 922
Query: 2343 FREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDYY 2522
FREVKD+AP I++ T+E R YDPD+EV+G+EDY+ DA Y+K +D+KLGNLM+YY
Sbjct: 923 FREVKDLAPNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYY 982
Query: 2523 GIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLYA 2702
GIKTEAEIL G +MK+S+SFT +RDAE+IGVAV L+KEAR+WFNE+ + SE DDLYA
Sbjct: 983 GIKTEAEILSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYA 1042
Query: 2703 KASAWYHVTYHP 2738
KASAWYHVTYHP
Sbjct: 1043 KASAWYHVTYHP 1054
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 1294 bits (3348), Expect = 0.0
Identities = 633/911 (69%), Positives = 746/911 (81%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
K+L+IQ+ GAPRIY++ + S+ N+ +DP+LNYF D PD+ W+R TDFT S IG SS++C
Sbjct: 167 KYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLC 226
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
LELP +L ENF YYKENEG F+LESG FS N DLVPIV P+ G+ LPY IL++V
Sbjct: 227 LELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRV 286
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIKY 542
N LVQNGCLAG L+ F+RL++P +P+ IE ALEKLYHLKECCYEP KW EQY KY
Sbjct: 287 NLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKY 346
Query: 543 RTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRISF 722
TS + +P +SLD GLVY+ +V ITP KV+F GPE+NVSNRVLR + EDIDNF+R+SF
Sbjct: 347 LTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSF 406
Query: 723 VDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLREN 902
VDE+ E++HSTD+SPR ++E R T IY RILS L NGIVIGDKKF+FLAFSSSQLREN
Sbjct: 407 VDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLREN 466
Query: 903 SAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPDI 1082
S WMFAS GLTAA IR WMG FHKIRNVA+YAARLGQSF SS ETL+V HEI +IPDI
Sbjct: 467 SCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDI 526
Query: 1083 EIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIKK 1262
E+ G +Y+FSDGIGKISA+FARKVA KC + PSAFQIRY GYKGVVAVDPTS KK
Sbjct: 527 EVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKK 586
Query: 1263 LSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 1442
LSLR SM KY S+N KLDVL+ SK+QPCFLNRQLITLLSTLGV DH FE+KQ+EAVDQL+
Sbjct: 587 LSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLD 646
Query: 1443 MTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNKT 1622
LTDP+ AQEALE+MSPGEN N+LKEML+CGY+PDAEPFLSMMLQ FRA KLLELR KT
Sbjct: 647 AMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKT 706
Query: 1623 RIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEGK 1802
RIF+PNGRSMMGCLDETRTLE+ QVF++ S G++ + + + + ++++G
Sbjct: 707 RIFIPNGRSMMGCLDETRTLEHGQVFVKFS--GSRFRNLYDSSDMFSERGRGQCYLIKGS 764
Query: 1803 VVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 1982
VVVAKNPCLHPGD+R+L+AVDV LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV W
Sbjct: 765 VVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCW 824
Query: 1983 DPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQEL 2162
DPELIP QI PMDYTP PP+ +DHDV IEEV+EYF NY+VNDSLG+IANAHT AD+E
Sbjct: 825 DPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKES 884
Query: 2163 RKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGKL 2342
KA S+ CVELAR FSIAVDFPKTGVPA+IP +L +EYPDFM+K DKP+YES++VIGKL
Sbjct: 885 LKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKL 944
Query: 2343 FREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDYY 2522
FREVKDIAP+ S I++FT +VAR+ YDPD+EV+GFEDYI DA YYK +D+KLGNLM+YY
Sbjct: 945 FREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYY 1004
Query: 2523 GIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLYA 2702
GIKTEAE+L G+ MK+SKSFT +RDAE+IG+AV LKKEAR+WFNE+ S S+ DD+ A
Sbjct: 1005 GIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDA 1064
Query: 2703 KASAWYHVTYH 2735
KASAWYHVTYH
Sbjct: 1065 KASAWYHVTYH 1075
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1268 bits (3281), Expect = 0.0
Identities = 622/912 (68%), Positives = 742/912 (81%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
K L+IQ+ GAPRIY+K + ++ + DDP+LNYF D PDD W+R TDFTRS+CIGQSS +
Sbjct: 166 KHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLW 225
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
LELP + +L RENF YYKENEG+ +LESGS++S N+ LVPIV P+ ++LP+ IL+KV
Sbjct: 226 LELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKV 285
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIKY 542
N LVQNGC+ GP L+ TF+RL++P + +I+ ALEKLY+L+ECCYEP +WL E+Y +
Sbjct: 286 NLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNF 345
Query: 543 RTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRISF 722
S + G+P+ISLD+GLVY+RRV ITPS+VYF GPEINVSNRVLR FH DIDNF+RISF
Sbjct: 346 SRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISF 405
Query: 723 VDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLREN 902
VDE+ E++HST++ R R T IY+RILS L NGIVIG+K+F+FLAFSSSQLREN
Sbjct: 406 VDEELEKIHSTNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLREN 459
Query: 903 SAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPDI 1082
SAWMFAS GLTAA IR WMG+F KIRNVAKYAARLGQSFSSS ETL+V + EI +IPDI
Sbjct: 460 SAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDI 519
Query: 1083 EIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIKK 1262
EI +G KYVFSDGIGKISA+FA+KVA KC ++ PSAFQIR GG+KGVVA+DPTS K
Sbjct: 520 EIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWK 579
Query: 1263 LSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 1442
LSLR+SM KY S+N KLDVL+WSK+QPCFLNRQLITLLSTLGV D FEKKQ+E VDQLN
Sbjct: 580 LSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLN 639
Query: 1443 MTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNKT 1622
LTDP+ AQEALE+MSPGEN N+LKEML+CGYKPDAEPFLSMML+ FRA KLLELR K
Sbjct: 640 ALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKA 699
Query: 1623 RIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEGK 1802
RIFV GRSMMGCLDETRTL Y QVF+Q S + +R FI++GK
Sbjct: 700 RIFVQKGRSMMGCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGK 742
Query: 1803 VVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 1982
V+VAKNPCLHPGDVRVL+AV+V +LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV W
Sbjct: 743 VIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCW 802
Query: 1983 DPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQEL 2162
DPELIP QI+PMDY+PA +DH+V IEE++EYF NY+VNDSLGII+NAHT FAD+E
Sbjct: 803 DPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREP 862
Query: 2163 RKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGKL 2342
KA S C+ELA+LFSIAVDFPKTGVPA+IP L VKEYPDFM+K DKP+Y+S +VIGKL
Sbjct: 863 DKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKL 922
Query: 2343 FREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDYY 2522
FREVK++AP IK T+E +R YDPD+EVEGFEDYI DA ++K ++D+KLGNLMDYY
Sbjct: 923 FREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYY 982
Query: 2523 GIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLYA 2702
G+KTEAEILGG +MK+S+SFT +RDAE+I +AV L+KEAR+WFNE+ S E DD YA
Sbjct: 983 GVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYA 1042
Query: 2703 KASAWYHVTYHP 2738
KASAWY+VTYHP
Sbjct: 1043 KASAWYYVTYHP 1054
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1266 bits (3277), Expect = 0.0
Identities = 630/912 (69%), Positives = 742/912 (81%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
KFL+IQ++ AP+IY+K D L+YF +TPDD W+R DFT S IGQSSA+C
Sbjct: 166 KFLLIQLLDAPQIYEK---------DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALC 216
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
LELP +L ENF YKEN+ +F+LESG++FS N+ LVPIV P G LP+ IL+K+
Sbjct: 217 LELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKI 276
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIKY 542
N+LVQNGCL+GPTL+ FFR ++PQ I ++ IE ALEKLY+L+ECCYEPV+WL EQY Y
Sbjct: 277 NTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTY 336
Query: 543 RTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRISF 722
S G+P+ISLD GLVY+RRV ITP KVYF GPE+NVSNRVLR++ EDIDNF+R+SF
Sbjct: 337 -ISKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSF 395
Query: 723 VDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLREN 902
+DE+ E++HST +SPR +E R T +YRRILS+L NGIVIGDKKFDFLA SSSQLR+N
Sbjct: 396 LDENSEKIHSTVISPR--MSNEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDN 453
Query: 903 SAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPDI 1082
SAWMFAS GLTAA IR MGDF +IRNVAKYAARLGQSFSSSKETL V +HEI +IPDI
Sbjct: 454 SAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDI 513
Query: 1083 EIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIKK 1262
E +G YVFSDGIGKISA+ A +VA KC ++S PSAFQIRYGGYKGVVAVDPTS +K
Sbjct: 514 ETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRK 573
Query: 1263 LSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 1442
LSLR+SM KY S+N LDVLSWSK++PCFLNRQLITLLSTLGVKDH+FEKKQ+EAVDQL+
Sbjct: 574 LSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLD 633
Query: 1443 MTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNKT 1622
L DP+ AQEALE+MSPGEN N+LKEMLMCGYKPDAEPFLSMMLQ FRA KLLELR KT
Sbjct: 634 TILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 693
Query: 1623 RIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEGK 1802
RIFVPNGRSMMGCLDETRTLEY +VF+Q+S G +Q G + + S FILEGK
Sbjct: 694 RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD-SLMFYGSGSHHDNFILEGK 752
Query: 1803 VVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 1982
VVVAKNPCLHPGDVR+L AVDV LHHMVDCVVFPQKG RPHP+ECSGSDLDGDIYFV W
Sbjct: 753 VVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCW 812
Query: 1983 DPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQEL 2162
D +LIPP QI PMDYTPAP V+DHDV IEEV+EYF NY+ ND LGIIANAHTVFAD+E
Sbjct: 813 DHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEY 872
Query: 2163 RKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGKL 2342
KA C ELA+LFSIA++FPKTGVPA+IP HL+VKEYPDFM+K +KPTYES+ VIGKL
Sbjct: 873 DKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKL 932
Query: 2343 FREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDYY 2522
FREVKD+AP +++FT++VA +SYD D+EV+GFEDY+ DA YYK ++DFKLG+LMD
Sbjct: 933 FREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCC 992
Query: 2523 GIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLYA 2702
GI+TE+EIL G++MK+SKSF R+DAE+I +AV L+KEAR WFN+ S + + DD+YA
Sbjct: 993 GIRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYA 1052
Query: 2703 KASAWYHVTYHP 2738
ASAWYHVTYHP
Sbjct: 1053 IASAWYHVTYHP 1064
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1265 bits (3274), Expect = 0.0
Identities = 620/911 (68%), Positives = 740/911 (81%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
K L+IQ+ GAPRIY+K + ++ + DDP+LNYF D PDD W+R TDFTRS+CIGQSS +C
Sbjct: 166 KHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLC 225
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
LELP + +L RENF YYKENEG+ +LESGS++S N+ LVPIV P+ ++LP+ IL+KV
Sbjct: 226 LELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKV 285
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIKY 542
N LVQNGC+ GP L+ TF+RL++P + +I+ ALEKLY+L+ECCYEP +WL E+Y +
Sbjct: 286 NLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNF 345
Query: 543 RTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRISF 722
S + G+P+ISLD+GLVY+RRV ITPS+VYF GPEINVSNRVLR FH DIDNF+RISF
Sbjct: 346 SRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISF 405
Query: 723 VDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLREN 902
VDE+ E++HST++ R R T IY+RILS L NGIVIG+K+F+FLAFSSSQLREN
Sbjct: 406 VDEELEKIHSTNVQAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLREN 459
Query: 903 SAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPDI 1082
SAWMFAS GLTAA IR WMG+F KIRNVAKYAARLGQSFSSS ETL+V + EI +IPDI
Sbjct: 460 SAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDI 519
Query: 1083 EIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIKK 1262
EI +G KYVF DGIGKISA+FA+KVA KC ++ PSAFQIR GG+KGVVA+DPTS K
Sbjct: 520 EIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWK 579
Query: 1263 LSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 1442
LSLR+SM KY S+N KLDVL+WSK+QPCFLNRQLITLLSTLGV D+ FEKKQ+E VDQLN
Sbjct: 580 LSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLN 639
Query: 1443 MTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNKT 1622
LTDP+ AQEALE+MSPGEN N+LKEML+CGYKPDAEPFLSMML+ FRA KLLELR K
Sbjct: 640 ALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKA 699
Query: 1623 RIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEGK 1802
RIFV GRSMMGCLDETRTL Y QVF+Q S + +R FI++GK
Sbjct: 700 RIFVQKGRSMMGCLDETRTLNYGQVFVQFS-----------------GSRSERRFIVQGK 742
Query: 1803 VVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 1982
V+VAKNPCLHPGDVRVL+AV+V +LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFV W
Sbjct: 743 VIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCW 802
Query: 1983 DPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQEL 2162
DPELIP QI+PMDY+PA +DH+V IEE++EYF NY+VNDSLGII+NAHT FAD+E
Sbjct: 803 DPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREP 862
Query: 2163 RKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGKL 2342
KA S C+ELA+LFSIAVDFPKTGVPA+IP L VKE+PDFM+K DKP+Y+S +VIGKL
Sbjct: 863 GKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKL 922
Query: 2343 FREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDYY 2522
FREVK++AP IK T+E +R YDPD+EVEGF DYI DA +YK ++D+KLGNLMDYY
Sbjct: 923 FREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYY 982
Query: 2523 GIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLYA 2702
G+KTEAEIL G +MK+S+SFT +RDAESI +AV L+KEAR+WFNE+ S E DD YA
Sbjct: 983 GVKTEAEILSGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYA 1042
Query: 2703 KASAWYHVTYH 2735
KASAWY+VTYH
Sbjct: 1043 KASAWYYVTYH 1053
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 1243 bits (3217), Expect = 0.0
Identities = 616/912 (67%), Positives = 737/912 (80%), Gaps = 1/912 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
K+L+IQ++GAPR+Y+K + + +IL++P+ NYF DTPDD W+RATDFT S CIG SSA+
Sbjct: 167 KYLLIQLLGAPRVYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALY 226
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
LELP +L +RENF YYKE+E +F+LESGS+FS N+DLVPIV P G+ LP+ ++K+
Sbjct: 227 LELPYGVDLPDLRENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKI 286
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAH-IERALEKLYHLKECCYEPVKWLKEQYIK 539
N L+QNGCL+GPTL+ F+RL++PQ I I ALEKL++LKEC YEP WL EQY K
Sbjct: 287 NMLLQNGCLSGPTLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRK 346
Query: 540 YRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRIS 719
Y T+ P+I+LD GLVY+RRV +TPSKVYF GPEINVSNRVLR + + ID F+R+S
Sbjct: 347 YLTAPRPPKPPAIALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVS 406
Query: 720 FVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLRE 899
FVDE+ E++ STDLSPR +EDR T IYRRILSVL NGI IGD+KF+FLAFSSSQLR+
Sbjct: 407 FVDEELEKLFSTDLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRD 466
Query: 900 NSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPD 1079
NS WMFA+ +G +A +IR+W+GDF IRNVAKYAARLGQSF SS ETLTV E VI D
Sbjct: 467 NSLWMFAAVDGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISD 526
Query: 1080 IEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIK 1259
IEI+ KYVFSDGIGKIS+ FA++VAKKC ++ +PSAFQIRY GYKGVVAVDPTS
Sbjct: 527 IEIERGAVKYVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSST 586
Query: 1260 KLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQL 1439
KLSLR+SM KY S+ KLDVL++SK Q C+LNRQLITLLSTLGV D +FEKKQ+EAV QL
Sbjct: 587 KLSLRKSMWKYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQL 646
Query: 1440 NMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNK 1619
N L DP+ A+EAL++MS GE N+LKE+L CGY+P+AEPFLSMMLQAFRA KL ELR K
Sbjct: 647 NAILNDPLRAREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTK 706
Query: 1620 TRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEG 1799
TRI +P+GR+MMGCLDE RTLEY +VF+Q S I ++ F + T + +I+ G
Sbjct: 707 TRISIPDGRAMMGCLDEMRTLEYGEVFVQFSGITHRPF--FEDSFMLGGTGSGQNYIVVG 764
Query: 1800 KVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVS 1979
+VVVAKNPCLHPGDVRVL+AV+V LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV
Sbjct: 765 RVVVAKNPCLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVC 824
Query: 1980 WDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQE 2159
WD ELIP Q EPMDY+PAP +DHDV+IEEVQEYF NY+VNDSLGIIANAHT FAD+E
Sbjct: 825 WDDELIPQKQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKE 884
Query: 2160 LRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGK 2339
KA S +C+ELARLFSIAVDFPKTGVPA IP LYVKEYPDFM+K +KPTYES++VIGK
Sbjct: 885 PSKAMSPSCIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGK 944
Query: 2340 LFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDY 2519
LFREVKDIAP + + FTKEVA RSYDPD+E +GFEDYI DA YYK +D+KLGNL+DY
Sbjct: 945 LFREVKDIAPNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDY 1004
Query: 2520 YGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLY 2699
YGIK+EAEI+GG++M++SKSFT RRDAESI +AV L+KEAR WFNE+ S S DD+Y
Sbjct: 1005 YGIKSEAEIIGGSIMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVY 1064
Query: 2700 AKASAWYHVTYH 2735
AKASAWY+VTYH
Sbjct: 1065 AKASAWYYVTYH 1076
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 1235 bits (3195), Expect = 0.0
Identities = 622/913 (68%), Positives = 736/913 (80%), Gaps = 1/913 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQK-LLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAV 179
K+L+IQ+ G PRIYQ+ + S GN +D +NYF D PDD W+R TDFT SCIGQSS++
Sbjct: 165 KYLVIQLYGNPRIYQQEVCSSGGNGYED--MNYFRD-PDD-WVRTTDFTPGSCIGQSSSL 220
Query: 180 CLELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYK 359
CL L EL ENF YYK+ +GQF+LE+GS FS N DLVPIV G++LPY IL+K
Sbjct: 221 CLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFK 280
Query: 360 VNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIK 539
+N LVQ GCL+GPTL+ F+RL++P+ I IE AL+KL +LKE CYEP WL E+Y K
Sbjct: 281 INLLVQQGCLSGPTLDNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRK 340
Query: 540 YRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRIS 719
Y S ISLD GLVY+RRV ITPSKVYF GPE+NVSNR+LR + DIDNF+R+S
Sbjct: 341 YMMSKKPPKPALISLDSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVS 400
Query: 720 FVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLRE 899
FVDE+ E+++STDLSPR + R TRIY R+LSVL +GIV+G KKF+FLAFSSSQLRE
Sbjct: 401 FVDEEMEKLYSTDLSPR----TSTRKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRE 456
Query: 900 NSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPD 1079
NS WMFA + +A +IR MGDF +IRNVAKYAARLGQSF SS ETL+V R+E+ VIPD
Sbjct: 457 NSLWMFAPTDEDSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPD 516
Query: 1080 IEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIK 1259
+ + + G KYVFSDGIGKISADFA +VAKKC ++ PSAFQIRYGGYKGVVAVDPTS
Sbjct: 517 VTVNSCGIKYVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSM 576
Query: 1260 KLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQL 1439
KLSLR+SM KY S+N KLDVL+ SK+QPCFLNRQLITLLSTL V+DH+F KKQ+ AV QL
Sbjct: 577 KLSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQL 636
Query: 1440 NMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNK 1619
N LTDP+ A+EAL++MS GE+ NVLKE+LMCGYKP+ EPFLSMMLQ FRA KLLELR K
Sbjct: 637 NAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTK 696
Query: 1620 TRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEG 1799
TRIF+P+GR+MMGCLDETRTLEY QVF+Q S +Q + ++S FI+EG
Sbjct: 697 TRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDICI----HSSLDSCFIIEG 752
Query: 1800 KVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVS 1979
KVVVAKNPCLHPGDVRVL+AV+V +LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFV
Sbjct: 753 KVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVC 812
Query: 1980 WDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQE 2159
WDPELIPP QI+PMDYTPAPP+ MD DV IEEV+EYFVNY+VNDSLGIIANAHTVFAD +
Sbjct: 813 WDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSK 872
Query: 2160 LRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGK 2339
L KA S C++LA+LFSIAVDFPKTGVPA+IPP LY KEYPDFM+K DK TY S +VIG+
Sbjct: 873 LDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQ 932
Query: 2340 LFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDY 2519
LFREVKDIAP S I +FT++VA + YDPD+EV+GFEDY+ DA Y+KG +D+KLGN++DY
Sbjct: 933 LFREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDY 992
Query: 2520 YGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLY 2699
YGIKTEAEIL G++M LSKSFT RRDA++I VAV L+KEARAWFNE+ + S +DD+Y
Sbjct: 993 YGIKTEAEILSGSIMTLSKSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVY 1052
Query: 2700 AKASAWYHVTYHP 2738
AKASAWYHVTYHP
Sbjct: 1053 AKASAWYHVTYHP 1065
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 1217 bits (3149), Expect = 0.0
Identities = 601/912 (65%), Positives = 722/912 (79%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
K L+IQ+ GAPRIY+KL S + +YFM T DD W+R TDFT+S IGQSS++C
Sbjct: 166 KLLVIQLFGAPRIYKKLSGS--------VYSYFMVTQDDQWVRTTDFTQS-LIGQSSSLC 216
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
L+LP L R+NF YYKE+E F LE+G FSHN DLVPIVRP ++LPY +L+KV
Sbjct: 217 LQLPYGMRLPNFRDNFLYYKESETPFRLETGVPFSHNSDLVPIVRPPIDIKLPYTLLFKV 276
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIKY 542
SLVQ GCL GP L+ +FF L+NP + +IE ALEKLY+LKECCY P WLKEQY +Y
Sbjct: 277 CSLVQTGCLPGPKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKECCYNPAAWLKEQYERY 336
Query: 543 RTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRISF 722
RTS H +P+I LDDGLVY+ RV +TP++VYF GPE+NVSNRVLRH+ + IDNF+R+SF
Sbjct: 337 RTSKEHPKSPAICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRVLRHYRDYIDNFLRVSF 396
Query: 723 VDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLREN 902
VDE++++M+STDLSPR E++ T++Y R++S+L +G+ IGD+KFDFLAFSSSQLR+N
Sbjct: 397 VDEEWDKMYSTDLSPRVAAGDENKRTKLYERVISILRDGVRIGDRKFDFLAFSSSQLRDN 456
Query: 903 SAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPDI 1082
S WMFA +GL A IREWMGDF IRNVAKYAARLGQSF SS ETL+V + EI I D+
Sbjct: 457 SLWMFAPTDGLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDV 516
Query: 1083 EIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIKK 1262
+ NG +Y FSDGIGKIS DFAR+VA KC ++SS PSAFQIRYGGYKGVVAVDP+S KK
Sbjct: 517 K---NGTEYTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKK 573
Query: 1263 LSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 1442
LSLR SM KY S N KLDVL+WSK+QPCFLNRQ+ITLLSTLGVKDH+FEK+Q+EAV QL+
Sbjct: 574 LSLRPSMLKYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLD 633
Query: 1443 MTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNKT 1622
L DP+ AQEAL++MSPGEN ++LKEML CGY+PD EPFLSMMLQ FRA KLL+LR K
Sbjct: 634 DVLIDPMRAQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKA 693
Query: 1623 RIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEGK 1802
R+F+P R MMGCLDET L+Y QVF++ S + G N+T+ +R + GK
Sbjct: 694 RVFIPKARQMMGCLDETGILKYGQVFVRYSGAVKR---GLFDDSYDNSTANERFDPVRGK 750
Query: 1803 VVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 1982
VVVAKNPCLHPGDVRVL AVDV L HMVDCVVFP+ GKRPHPNECSGSDLDGDIYFV W
Sbjct: 751 VVVAKNPCLHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCW 810
Query: 1983 DPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQEL 2162
D +LIP Q+EPMDY PAP +DHDV IEEV++YF NY+VNDSLGIIANAHTVFAD+E
Sbjct: 811 DSDLIPTKQVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEP 870
Query: 2163 RKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGKL 2342
A S+ C+ELARLFSIAVDF KTG+PA+IPPHL VKEYPDFM+K DK Y S VIGKL
Sbjct: 871 LMALSEPCLELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKL 930
Query: 2343 FREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDYY 2522
FREVKDIAPQ S ++FTKEVARRSYDPD+EV+GFED+I +A +K E+D+KLGNLM+YY
Sbjct: 931 FREVKDIAPQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYY 990
Query: 2523 GIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDLYA 2702
G+KTEAE+L G +MK+SK+F R+DAE+IG AV L+ EAR+WF + G+E DD+YA
Sbjct: 991 GVKTEAEVLSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWFKK-----GTEADDVYA 1045
Query: 2703 KASAWYHVTYHP 2738
KASAWY+VTYHP
Sbjct: 1046 KASAWYYVTYHP 1057
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 1212 bits (3135), Expect = 0.0
Identities = 613/920 (66%), Positives = 731/920 (79%), Gaps = 8/920 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
++L+IQ++GAPR+++ + ++ NI DDP+ N+F D PD+ WIRA DFT S IGQSSA+C
Sbjct: 170 RYLLIQLLGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAIC 229
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
LELP +L RENF YY+E+E Q+ L++G FS N LVPIV P G+++ Y IL+KV
Sbjct: 230 LELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKV 289
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIKY 542
NSLVQ+ CLAGP L+ F+RL++P+ +P IE ALEK+Y+ KE CYEP KWL +QY Y
Sbjct: 290 NSLVQHACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTY 349
Query: 543 RTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRISF 722
S +H +P+ISLD GLVY+RRV ITP KVYF GPE+NVSNRVLRHF E IDNF+R+SF
Sbjct: 350 LESKNHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSF 409
Query: 723 VDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLREN 902
VDE+ +++ STDLS R S+++ T IY RILS+L NGIV+GDKKF+FLAFSSSQLREN
Sbjct: 410 VDEELDKLFSTDLSSR----SQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLREN 465
Query: 903 SAWMFA-SGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPD 1079
S WMFA + G TAA IR+WMG+F +IRNVAKYAARLGQSF SS ETL+V R E+ +IPD
Sbjct: 466 SLWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPD 525
Query: 1080 IEIQT-NGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSI 1256
++ T +G +YVFSDGIGKIS +FA+KVAKKC + PSAFQIRYGGYKGVVAVDP S
Sbjct: 526 VKKLTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCT-PSAFQIRYGGYKGVVAVDPKSC 584
Query: 1257 KKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQ 1436
KLSLR+SM KY S N KLDVL+ SKFQPC+LNRQLI+LLSTLG+KD +FEKKQ+E V+Q
Sbjct: 585 YKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQ 644
Query: 1437 LNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRN 1616
LN LTD + AQE L++MS GE NVLKEML+CGYKP+ EPFLSMMLQ FRA KLLELR
Sbjct: 645 LNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRL 704
Query: 1617 KTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSC-----IGNKQFQGHLPFLIRNNTSEQR 1781
K+RIF+P GR+MMGCLDETRTLEY QVF+Q S + + F LP +
Sbjct: 705 KSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDFFSYDLP----------K 754
Query: 1782 TFILEGKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDG 1961
++++GKVVVAKNPCLHPGDVRVLQAVDV +L+HMVDCVVFPQKG RPHPNECSGSDLDG
Sbjct: 755 NYMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDG 814
Query: 1962 DIYFVSWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHT 2141
DIYFV WD ELIP I+PMDYT V +DHDV IEEV+EYF NY+VNDSLGIIANAHT
Sbjct: 815 DIYFVCWDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHT 874
Query: 2142 VFADQELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYES 2321
VFAD+E KA SD CV+LARLFS AVDFPKTGVPA IPP L+VKEYPDFM+K DKPTY+S
Sbjct: 875 VFADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKS 934
Query: 2322 KHVIGKLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKL 2501
+VIGKLFREVK+I+ I +FTK VAR SYD ++EV+GF DY+ DA Y+K +D+KL
Sbjct: 935 HNVIGKLFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKL 994
Query: 2502 GNLMDYYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVS-G 2678
GNLMDYYGIKTEAEILGGN+MK+SKSF RRDAE+I +AV L+KEARAWFNE SS
Sbjct: 995 GNLMDYYGIKTEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVD 1054
Query: 2679 SEEDDLYAKASAWYHVTYHP 2738
S D+YAKASAWYHVTYHP
Sbjct: 1055 SGSSDVYAKASAWYHVTYHP 1074
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 1208 bits (3125), Expect = 0.0
Identities = 609/919 (66%), Positives = 721/919 (78%), Gaps = 8/919 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPI------LNYFMDTPDDMWIRATDFTRSSCIG 164
KFL+IQVIGAP+I++K D P+ ++++ D D+ WIR TDFT SSCIG
Sbjct: 167 KFLVIQVIGAPKIFEKE--------DQPVNFLFGMMDFYSDGSDEQWIRTTDFTSSSCIG 218
Query: 165 QSSAVCLELPKSCELSGIRENFHYYKENEGQ-FLLESGSAFSHNMD-LVPIVRPTHGLEL 338
QS+A CLELP + RENF Y E+ FL++SGS++S N + LVP+V P G +L
Sbjct: 219 QSTAFCLELPVHVHVPDFRENFANYAEHRASTFLIQSGSSYSSNANKLVPVVDPPPGFDL 278
Query: 339 PYVILYKVNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKW 518
P+ IL+KVN+LVQN CL GP L+ F++L+NP+ A I+ +LEKL+HL ECCYEP +W
Sbjct: 279 PFEILFKVNTLVQNACLPGPALDLEFYQLLNPKKYDRALIDHSLEKLFHLGECCYEPARW 338
Query: 519 LKEQYIKYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDI 698
L+E+Y K +S +P+ISLDDGLVYI RV +TP++VYF GPE+NVSNRVLRH+ E I
Sbjct: 339 LREEYKKLNSSKKLPLSPTISLDDGLVYIYRVLVTPARVYFLGPEVNVSNRVLRHYSEYI 398
Query: 699 DNFIRISFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAF 878
+NF+RISFVDED E++HS DLSPR S R T++Y RI SVL +GIVIGDKKF+FLAF
Sbjct: 399 NNFLRISFVDEDLEKIHSMDLSPRS---STQRRTKLYDRIYSVLRDGIVIGDKKFEFLAF 455
Query: 879 SSSQLRENSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRH 1058
SSSQLRENSAWMFA + LTAA IR WMGDF IRNVAKYAARLGQSFSSS+ETL VR
Sbjct: 456 SSSQLRENSAWMFAPRDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 515
Query: 1059 EIAVIPDIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVA 1238
EI VIPD+E +YVFSDGIGKISA+FARKVAKKC + PSAFQIRYGGYKGVVA
Sbjct: 516 EIEVIPDVEAMYLDTRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVA 575
Query: 1239 VDPTSIKKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQ 1418
VDP S KKLSLR+SM K+ S N KLDVL+WSK+QPC+LNRQ+ITLLSTLGVKD++FEKKQ
Sbjct: 576 VDPNSSKKLSLRKSMSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQ 635
Query: 1419 KEAVDQLNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQK 1598
+E VD+L+ LTDP+ A EAL +M+PGEN N+LK++L+CGYKPDAEPFLSMMLQ FRA K
Sbjct: 636 REVVDRLDAILTDPLEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASK 695
Query: 1599 LLELRNKTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQ 1778
LLELR KTRIF+P GRSMMGCLDETRTLEY QV +Q S N T
Sbjct: 696 LLELRTKTRIFIPGGRSMMGCLDETRTLEYGQVVVQYS----------------NPTMPG 739
Query: 1779 RTFILEGKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLD 1958
+ +I+ G VVVAKNPCLHPGDVRVLQAV+V L+HMVDCVVFPQKG RPHPNECSGSDLD
Sbjct: 740 KRYIITGPVVVAKNPCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLD 799
Query: 1959 GDIYFVSWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAH 2138
GDIYF+ WD ELIPP EPMDYTP P ++DHDV IEEV+EYF NY+VNDSLGIIANAH
Sbjct: 800 GDIYFICWDHELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAH 859
Query: 2139 TVFADQELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYE 2318
T FAD+E KA SD C+ELAR FSIAVDFPKTG+ A+IP HLYVKEYPDFMDK DKPTYE
Sbjct: 860 TAFADKEPLKAFSDPCIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYE 919
Query: 2319 SKHVIGKLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFK 2498
SK+VIGKLFREVK+ AP + I++FT +VA +SYD D+EVEGFE+YI +A ++KG +D++
Sbjct: 920 SKNVIGKLFREVKERAPPLISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYR 979
Query: 2499 LGNLMDYYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSG 2678
LGNLMDYYGIKTEAEIL G +M++SKSFT RRDAESIG AV L+KEA +WFN +
Sbjct: 980 LGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKEALSWFNNAEDKND 1039
Query: 2679 SEEDDLYAKASAWYHVTYH 2735
+E AKASAWYHVTYH
Sbjct: 1040 FDES---AKASAWYHVTYH 1055
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 1206 bits (3119), Expect = 0.0
Identities = 602/913 (65%), Positives = 722/913 (79%), Gaps = 2/913 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
K+L+IQ+ GAPRIY+K+ ++G I D+P+LN+F + DD W+R TDFT S IGQSS++C
Sbjct: 167 KYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLC 226
Query: 183 LELPKSCELSGIRENFHYYKENEGQF-LLESGSAFSHNMDLVPIVRPTHGLELPYVILYK 359
L+LP +L ++NF YY+E E +F L++ + FS DL PIV + LPY IL+K
Sbjct: 227 LKLPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIV-DSRSHVLPYKILFK 285
Query: 360 VNSLVQNGCLAGPTLNATFFRLINPQFIP-LAHIERALEKLYHLKECCYEPVKWLKEQYI 536
+N+LVQ GC+ P L+A+F+RL+ + +E ALEKL+HLKEC Y+P +L EQY
Sbjct: 286 INALVQYGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYR 345
Query: 537 KYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRI 716
KY S H +P ISLDDGLVY+RRV ITP KV+F GPE+NVSNRVLRHF + IDNF+R+
Sbjct: 346 KY--SRHPPNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRV 403
Query: 717 SFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLR 896
SFVDE++++M STDL PR KSED T IYRRILSVL NGIVIGDK F FLAFSSSQLR
Sbjct: 404 SFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLR 463
Query: 897 ENSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIP 1076
+NS WMFASG + AA IR WMGDF I+N AKYAARLGQSF SS E L+V +E +IP
Sbjct: 464 DNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIP 523
Query: 1077 DIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSI 1256
DIE+Q KYVFSDGIGKIS+ FA++VA KC Q+ +PSAFQIRYGGYKGVVAVDP S
Sbjct: 524 DIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQA-VPSAFQIRYGGYKGVVAVDPYST 582
Query: 1257 KKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQ 1436
KLSLR+SMCK+ S N KLDVL SK+QPCFLNRQLITL+STLGV+D IFEKKQ EAV+Q
Sbjct: 583 IKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQ 642
Query: 1437 LNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRN 1616
L+ LTDP+ AQEALE+MSPGEN N+LKEML CGY+PD EP+LSMMLQ FRA KLLELR
Sbjct: 643 LDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRT 702
Query: 1617 KTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILE 1796
K+RIF+PNGR+MMGCLDETRTLEY QVF+Q+S ++ F N + ++E
Sbjct: 703 KSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAF---NRIGREHHLVIE 759
Query: 1797 GKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFV 1976
G V VAKNPCLHPGDVRVL+AV++ L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV
Sbjct: 760 GNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFV 819
Query: 1977 SWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQ 2156
WD ELIP QI PMDYTPAPP +D DV E++QEYFVNYMVNDSLGIIANAHT FAD+
Sbjct: 820 CWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADK 879
Query: 2157 ELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIG 2336
EL KA S C+ELA+LFS+AVDFPKTGVPA IP HLYVKE+PDFM+K D+P+YES VIG
Sbjct: 880 ELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIG 939
Query: 2337 KLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMD 2516
KLFR VKDIAP +S I++FT++VARR YD D+EVEGFEDY+ DA Y+K +D+KLGNL+D
Sbjct: 940 KLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLD 999
Query: 2517 YYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDDL 2696
YYGIK+EAE+L G++M++SKSFT RRDAE+I +AV L+KEAR WFN R + S DDL
Sbjct: 1000 YYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREG-ADSNSDDL 1058
Query: 2697 YAKASAWYHVTYH 2735
+AKASAWY+VTYH
Sbjct: 1059 FAKASAWYYVTYH 1071
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 1205 bits (3118), Expect = 0.0
Identities = 601/916 (65%), Positives = 716/916 (78%), Gaps = 4/916 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
++L++Q+ GAPRI+QK L + +I D P+ NY+ D PD+ W+R+ DFT S IGQSS++C
Sbjct: 243 RYLVLQMQGAPRIFQKPLSFSSDIYDSPLFNYYKDFPDEQWVRSIDFTPSCSIGQSSSLC 302
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILYKV 362
L LP + IRENF YYKE G F L++GS+FSH++ LVPIV P ++LPY IL++V
Sbjct: 303 LALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSLHLVPIVHPPDQIKLPYKILFRV 362
Query: 363 NSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYIKY 542
NSLVQNG L GPTL+ F+ L+N +P +ER+LE + L CC EP KWL+EQY KY
Sbjct: 363 NSLVQNGFLVGPTLDTEFYNLLNG--LPSPFVERSLEDISRLTNCCLEPAKWLQEQYKKY 420
Query: 543 RTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRISF 722
R +ISL+ GLVY+ RV +TPSKVYFYGPE+NVSNRVLR F IDNF+RISF
Sbjct: 421 RNLPRRPSPAAISLEPGLVYVHRVQVTPSKVYFYGPEVNVSNRVLRQFSNYIDNFLRISF 480
Query: 723 VDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLREN 902
+DEDF + STDLS R +E++ T +Y R+LS L NGIVIGDKKF+FLAFSSSQLR+N
Sbjct: 481 IDEDFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLKNGIVIGDKKFEFLAFSSSQLRDN 540
Query: 903 SAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIPDI 1082
SAWMF+ +G+TAA+IR+WMGDF IRNVAK AAR+GQSF SS ETL V+ E+ I DI
Sbjct: 541 SAWMFSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPEEVERISDI 600
Query: 1083 EIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSIKK 1262
+ NGK YVFSDGIGKIS +FA+KVA KC PSAFQIRYGGYKGVVAVDPTS K
Sbjct: 601 K---NGK-YVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVAVDPTSRYK 656
Query: 1263 LSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQLN 1442
LSLR SM KY S N KLDVL++SKFQPCFLNRQ+ITLLSTLGV+D++FE KQK+AV QL+
Sbjct: 657 LSLRGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQKDAVSQLD 716
Query: 1443 MTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRNKT 1622
L DP SA EALE+MSPGENVNVLKEML CGY PD+EPFLSMMLQ FR KL EL+ KT
Sbjct: 717 KILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLKLSELKTKT 776
Query: 1623 RIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFILEGK 1802
RIF+PNGRSMMGCLDET LEY QVF+Q S IGN++ I + S+QR ++ GK
Sbjct: 777 RIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQRVRVVVGK 836
Query: 1803 VVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 1982
V+VAKNPCLHPGDVR+L A+DV LHHMV+CVVFPQKGKRPHPNECSGSDLDGDIYFVSW
Sbjct: 837 VIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLDGDIYFVSW 896
Query: 1983 DPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFADQEL 2162
DP LIP Q PM+Y PAP +DH+V IEE++EYF NYM+NDSLGIIANAHTVFAD+E
Sbjct: 897 DPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNYMINDSLGIIANAHTVFADKEP 956
Query: 2163 RKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVIGKL 2342
KA+S CV+LA LFS+AVDFPKTGVPA IP HLYVKEYPDFMDK DKPTY+S+ VIGKL
Sbjct: 957 MKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEYPDFMDKTDKPTYQSRRVIGKL 1016
Query: 2343 FREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLMDYY 2522
FREVKD+ P S I +FTK VA +SYD D+EV+GFE Y+ DA +YK E+DFKL LMD+Y
Sbjct: 1017 FREVKDLPPHTSAITSFTKSVALKSYDLDMEVDGFELYLDDAHWYKSEYDFKLAGLMDHY 1076
Query: 2523 GIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSV----SGSEED 2690
GIKTEAEI+ GN++ L+KSFT RRDAE+I +A+ L+KE R WF E+ SV S +D
Sbjct: 1077 GIKTEAEIVSGNILSLAKSFTKRRDAEAIALAMRSLRKEVRGWFKEKRSVVDEGDYSLDD 1136
Query: 2691 DLYAKASAWYHVTYHP 2738
D+YAKASAWYH+TYHP
Sbjct: 1137 DVYAKASAWYHITYHP 1152
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 1203 bits (3112), Expect = 0.0
Identities = 602/915 (65%), Positives = 721/915 (78%), Gaps = 4/915 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
+FL++Q+ GAPRIY++L +D ++F +TPDD W+R TDFT S IG SS++C
Sbjct: 164 QFLLLQLFGAPRIYKRL--------EDSCYSFFKETPDDQWVRTTDFT-PSWIGLSSSLC 214
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGS--AFSHNMDLVPIVRPTHGLELPYVILY 356
LE +L E+F YYKE+ QF+L++G +FS + LVPIV G+ELPY IL+
Sbjct: 215 LEFRNGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILF 274
Query: 357 KVNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYI 536
K++SL+Q+GC G LN FF+L++P+ +A IE ALEKLY+LKECCY+PV+WL EQY
Sbjct: 275 KISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYD 334
Query: 537 KYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRI 716
+Y +P I+LDDGLVY+RRV +TP KVYF GPE+NVSNRVLR++ EDI+NF+R+
Sbjct: 335 EYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRV 394
Query: 717 SFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLR 896
SFVDE++E++HSTDL PR + R T IY RILS L NG +IGDK+F+FLAFSSSQLR
Sbjct: 395 SFVDEEWEKIHSTDLLPRASTGNGTR-TDIYERILSTLRNGFIIGDKRFEFLAFSSSQLR 453
Query: 897 ENSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIP 1076
+NS WMFAS GLTA IR WMGDF +IRNVAKYAARLGQSF SS+ETL+V RHE+ VIP
Sbjct: 454 DNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIP 513
Query: 1077 DIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSI 1256
D+ +G Y+FSDGIGKISADFA +V KC +Q + PS+FQIRYGGYKGVVAVDP S
Sbjct: 514 DVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQYT-PSSFQIRYGGYKGVVAVDPYSS 572
Query: 1257 KKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQ 1436
KLSLR+SM KY S N KLDVL WSK+QPC+LNRQL+TLLSTLGV D + E+KQ EAVDQ
Sbjct: 573 MKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQ 632
Query: 1437 LNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRN 1616
L+ L D + AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQ FRA KLL+LR
Sbjct: 633 LDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRT 692
Query: 1617 KTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQF--QGHLPFLIRNNTSEQRTFI 1790
+TRIF+PNGR+MMGCLDE+RTLEY QVF+Q S G +QF + H PF ++ S FI
Sbjct: 693 RTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESH-PF--NDSGSANCDFI 749
Query: 1791 LEGKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIY 1970
L+G VVVAKNPCLHPGD+RVL+AVDV LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIY
Sbjct: 750 LKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIY 809
Query: 1971 FVSWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFA 2150
FV WDP+LIPP Q++ MDYTPAP +DHDV IEEV+EYF NY++NDSLGIIANAH VFA
Sbjct: 810 FVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFA 869
Query: 2151 DQELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHV 2330
D+E A SD C +LA+LFSIAVDFPKTGVPA+IP L KEYPDFM+K DKPTY S+ V
Sbjct: 870 DREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKV 929
Query: 2331 IGKLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNL 2510
IGKLF++VK+ PQ S I TFT++VAR+SYD D+ V+GFEDYI +A YYK E+D KLGNL
Sbjct: 930 IGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNL 989
Query: 2511 MDYYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEED 2690
MDYYGIKTEAEIL G +MK SK+F R+DAE+IGVAV CL+KEARAWF RS + D
Sbjct: 990 MDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRRSDI-----D 1044
Query: 2691 DLYAKASAWYHVTYH 2735
D+ AKASAWYHVTYH
Sbjct: 1045 DMLAKASAWYHVTYH 1059
>ref|XP_007153214.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
gi|593705717|ref|XP_007153215.1| hypothetical protein
PHAVU_003G016600g [Phaseolus vulgaris]
gi|561026568|gb|ESW25208.1| hypothetical protein
PHAVU_003G016600g [Phaseolus vulgaris]
gi|561026569|gb|ESW25209.1| hypothetical protein
PHAVU_003G016600g [Phaseolus vulgaris]
Length = 1122
Score = 1200 bits (3104), Expect = 0.0
Identities = 606/920 (65%), Positives = 722/920 (78%), Gaps = 9/920 (0%)
Frame = +3
Query: 6 FLIIQVIGAPRIYQKLLFSNG-----NILDDPILNYFMDTPDDMWIRATDFTRSSCIGQS 170
+L++Q++GAPRI++ + + +I D+P+ N+F D P+D W R DFT+ SCIGQS
Sbjct: 171 YLLVQLLGAPRIFENGVQTYSEDVFVSIFDNPLYNFFKDVPEDQWTRTIDFTKDSCIGQS 230
Query: 171 SAVCLELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVI 350
SA+CLE + L + F YY+++E Q+ L+ G FS N +LVPIV P G+E+PY I
Sbjct: 231 SAICLEFSREQNLPNFKNIFAYYEQSERQYTLQIGIPFSQNWNLVPIVAP-QGVEIPYDI 289
Query: 351 LYKVNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQ 530
L+KVNSLVQ+ CL GP LNA F+RL++P+ +PL IE ALEKLY+ KE CYEP KWL Q
Sbjct: 290 LFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENALEKLYYSKEFCYEPAKWLTNQ 349
Query: 531 YIKYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFI 710
Y KY S HH +P+ISLD GLVY+RRV ITP KVYF GPE+NVSNRVLRHFHE +DNFI
Sbjct: 350 YNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFHEHLDNFI 409
Query: 711 RISFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQ 890
R+SFVDE+ ++M STDLS R K+E +Y+RIL +L NGI+IGDKKF+FLAFSSSQ
Sbjct: 410 RVSFVDEELDKMFSTDLSSRAQKKTE-----VYKRILDILKNGILIGDKKFEFLAFSSSQ 464
Query: 891 LRENSAWMFA-SGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIA 1067
LRENS WMFA +G G +AA IREWMG+F +IRNVAKYAARLGQSF SS ETL+VRR EI
Sbjct: 465 LRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAARLGQSFGSSTETLSVRRDEIE 524
Query: 1068 VIPDIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDP 1247
+I D++ G +YVFSDGIGKIS +FA++VAKKC + PSAFQIRYGGYKGVVAVDP
Sbjct: 525 IIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDCT-PSAFQIRYGGYKGVVAVDP 583
Query: 1248 TSIKKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEA 1427
S KLSLR SM KY S N KLDVL SKFQPCFLNRQLITLLSTLG+KD +FEKKQ+EA
Sbjct: 584 ESPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQLITLLSTLGIKDGVFEKKQREA 643
Query: 1428 VDQLNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLE 1607
VDQLN LTD + AQE L++MS GE NVLKEML+CGYKP+ EPFLSMMLQ FRA KLLE
Sbjct: 644 VDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGYKPNEEPFLSMMLQVFRASKLLE 703
Query: 1608 LRNKTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQ--- 1778
LR K+RIF+P GR+MMGCLDET TLEY QVF+Q S L L +++
Sbjct: 704 LRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFS-------NNRLRDLSDDDSCSYDLP 756
Query: 1779 RTFILEGKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLD 1958
+T+++ GKVVVAKNPCLHPGDVRVLQAVDV +L+HMVDCVVFPQKG RPHPNECSGSDLD
Sbjct: 757 KTYMVVGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGTRPHPNECSGSDLD 816
Query: 1959 GDIYFVSWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAH 2138
GDIYFV WDPEL+P +++PMDYTP+ + +DHDV IEEV+EYF NY+VNDSLGIIANAH
Sbjct: 817 GDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYFCNYIVNDSLGIIANAH 876
Query: 2139 TVFADQELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYE 2318
TVFAD + KA S C++LA+LFS AVDFPKTGVPA IP LY KEYPDFM+K DK TY+
Sbjct: 877 TVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYAKEYPDFMEKSDKVTYK 936
Query: 2319 SKHVIGKLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFK 2498
S +VIGKLFREVK+I+ S I +FT+EVARRSYD ++EV+GF DY+ DA YYK +D+K
Sbjct: 937 SPNVIGKLFREVKEISADDS-ISSFTQEVARRSYDTEMEVDGFMDYVDDAIYYKTNYDYK 995
Query: 2499 LGNLMDYYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSG 2678
LGNLMDYYGIKTE EIL GN+ K+SKSF RRDAE++ VAV L+KEAR+WFNE G
Sbjct: 996 LGNLMDYYGIKTEGEILSGNITKMSKSFNKRRDAEAVNVAVRSLRKEARSWFNE-----G 1050
Query: 2679 SEEDDLYAKASAWYHVTYHP 2738
S +DD YAKASAWYHVTYHP
Sbjct: 1051 SSDDDAYAKASAWYHVTYHP 1070
>ref|XP_007153213.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
gi|561026567|gb|ESW25207.1| hypothetical protein
PHAVU_003G016600g [Phaseolus vulgaris]
Length = 1145
Score = 1200 bits (3104), Expect = 0.0
Identities = 606/920 (65%), Positives = 722/920 (78%), Gaps = 9/920 (0%)
Frame = +3
Query: 6 FLIIQVIGAPRIYQKLLFSNG-----NILDDPILNYFMDTPDDMWIRATDFTRSSCIGQS 170
+L++Q++GAPRI++ + + +I D+P+ N+F D P+D W R DFT+ SCIGQS
Sbjct: 194 YLLVQLLGAPRIFENGVQTYSEDVFVSIFDNPLYNFFKDVPEDQWTRTIDFTKDSCIGQS 253
Query: 171 SAVCLELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVI 350
SA+CLE + L + F YY+++E Q+ L+ G FS N +LVPIV P G+E+PY I
Sbjct: 254 SAICLEFSREQNLPNFKNIFAYYEQSERQYTLQIGIPFSQNWNLVPIVAP-QGVEIPYDI 312
Query: 351 LYKVNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQ 530
L+KVNSLVQ+ CL GP LNA F+RL++P+ +PL IE ALEKLY+ KE CYEP KWL Q
Sbjct: 313 LFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENALEKLYYSKEFCYEPAKWLTNQ 372
Query: 531 YIKYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFI 710
Y KY S HH +P+ISLD GLVY+RRV ITP KVYF GPE+NVSNRVLRHFHE +DNFI
Sbjct: 373 YNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFHEHLDNFI 432
Query: 711 RISFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQ 890
R+SFVDE+ ++M STDLS R K+E +Y+RIL +L NGI+IGDKKF+FLAFSSSQ
Sbjct: 433 RVSFVDEELDKMFSTDLSSRAQKKTE-----VYKRILDILKNGILIGDKKFEFLAFSSSQ 487
Query: 891 LRENSAWMFA-SGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIA 1067
LRENS WMFA +G G +AA IREWMG+F +IRNVAKYAARLGQSF SS ETL+VRR EI
Sbjct: 488 LRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAARLGQSFGSSTETLSVRRDEIE 547
Query: 1068 VIPDIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDP 1247
+I D++ G +YVFSDGIGKIS +FA++VAKKC + PSAFQIRYGGYKGVVAVDP
Sbjct: 548 IIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDCT-PSAFQIRYGGYKGVVAVDP 606
Query: 1248 TSIKKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEA 1427
S KLSLR SM KY S N KLDVL SKFQPCFLNRQLITLLSTLG+KD +FEKKQ+EA
Sbjct: 607 ESPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQLITLLSTLGIKDGVFEKKQREA 666
Query: 1428 VDQLNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLE 1607
VDQLN LTD + AQE L++MS GE NVLKEML+CGYKP+ EPFLSMMLQ FRA KLLE
Sbjct: 667 VDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGYKPNEEPFLSMMLQVFRASKLLE 726
Query: 1608 LRNKTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQ--- 1778
LR K+RIF+P GR+MMGCLDET TLEY QVF+Q S L L +++
Sbjct: 727 LRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFS-------NNRLRDLSDDDSCSYDLP 779
Query: 1779 RTFILEGKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLD 1958
+T+++ GKVVVAKNPCLHPGDVRVLQAVDV +L+HMVDCVVFPQKG RPHPNECSGSDLD
Sbjct: 780 KTYMVVGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGTRPHPNECSGSDLD 839
Query: 1959 GDIYFVSWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAH 2138
GDIYFV WDPEL+P +++PMDYTP+ + +DHDV IEEV+EYF NY+VNDSLGIIANAH
Sbjct: 840 GDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYFCNYIVNDSLGIIANAH 899
Query: 2139 TVFADQELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYE 2318
TVFAD + KA S C++LA+LFS AVDFPKTGVPA IP LY KEYPDFM+K DK TY+
Sbjct: 900 TVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYAKEYPDFMEKSDKVTYK 959
Query: 2319 SKHVIGKLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFK 2498
S +VIGKLFREVK+I+ S I +FT+EVARRSYD ++EV+GF DY+ DA YYK +D+K
Sbjct: 960 SPNVIGKLFREVKEISADDS-ISSFTQEVARRSYDTEMEVDGFMDYVDDAIYYKTNYDYK 1018
Query: 2499 LGNLMDYYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSG 2678
LGNLMDYYGIKTE EIL GN+ K+SKSF RRDAE++ VAV L+KEAR+WFNE G
Sbjct: 1019 LGNLMDYYGIKTEGEILSGNITKMSKSFNKRRDAEAVNVAVRSLRKEARSWFNE-----G 1073
Query: 2679 SEEDDLYAKASAWYHVTYHP 2738
S +DD YAKASAWYHVTYHP
Sbjct: 1074 SSDDDAYAKASAWYHVTYHP 1093
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 1199 bits (3103), Expect = 0.0
Identities = 596/914 (65%), Positives = 727/914 (79%), Gaps = 3/914 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLL--FSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSA 176
K+L+IQ+IGAPRI++ + ++ N+ +DP+ NYF ++PDD WIRA DFT +CIGQSSA
Sbjct: 172 KYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFKESPDDQWIRAVDFTPFNCIGQSSA 231
Query: 177 VCLELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHNMDLVPIVRPTHGLELPYVILY 356
+CLELP + IRE F +Y+ENEGQ+ LESGS FSHN+D+VPIV P G+ +P+ IL+
Sbjct: 232 ICLELPCDRDFPNIREYFVHYQENEGQYTLESGSPFSHNLDVVPIVAPPQGIYIPFDILF 291
Query: 357 KVNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYI 536
KVNSLVQ+GCL+G L+ F+ L++P I + IE ALEK+Y+ K+ CYEP +WLK+QY
Sbjct: 292 KVNSLVQHGCLSGSELDNAFYCLVDPLRINVDFIEHALEKMYYSKDFCYEPARWLKDQYR 351
Query: 537 KYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRI 716
Y SN+ +PSISLD+GLVY+RRV ITP KVYF GPEINVSNRV+RHFHE IDNF+R+
Sbjct: 352 MYLNSNYPLQSPSISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVVRHFHEHIDNFLRV 411
Query: 717 SFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLR 896
SFVDE+ ++++STDLS R S T +Y RILS+L NGIVIGDKKF+FLAFSSSQLR
Sbjct: 412 SFVDEELDKLYSTDLSSRI---SVGVRTEVYNRILSILRNGIVIGDKKFEFLAFSSSQLR 468
Query: 897 ENSAWMFA-SGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVI 1073
ENS WMFA + GLTA IR WMGDF +IRNVAKYAARLGQSF SS ETL+V R+EI +I
Sbjct: 469 ENSLWMFAPTATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSFGSSTETLSVNRNEIEII 528
Query: 1074 PDIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTS 1253
PD +++ + +YVFSDGIGKIS +FAR+VAKKC S+ PSAFQIRYGGYKGVVAVDPTS
Sbjct: 529 PDAQVKHDTIEYVFSDGIGKISLEFARRVAKKCGYDST-PSAFQIRYGGYKGVVAVDPTS 587
Query: 1254 IKKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVD 1433
KLSLR+SM KY S N KLDVL+ SK+QPC+LNRQLITLLSTL V+D +FEKKQKEAV+
Sbjct: 588 SVKLSLRKSMYKYDSDNTKLDVLACSKYQPCYLNRQLITLLSTLKVEDSVFEKKQKEAVN 647
Query: 1434 QLNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELR 1613
QLN LT+ + AQE L++MS GE N+LKEML CGYKP+ EPFLSMMLQ FRA KLLELR
Sbjct: 648 QLNTILTNSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEPFLSMMLQTFRASKLLELR 707
Query: 1614 NKTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHLPFLIRNNTSEQRTFIL 1793
KTRIF+P GR+MMG LDETRTLEY +VF+Q S N + + + ++
Sbjct: 708 QKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYS---NNRISSL-------SYGSANSLVV 757
Query: 1794 EGKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYF 1973
GKVVVAKNPCLHPGDVRVL+AVDV LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYF
Sbjct: 758 TGKVVVAKNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYF 817
Query: 1974 VSWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFAD 2153
V WDPELIPP EPM+Y P+V+ HDV+IEEV+EYF NY++NDSLGIIANAH VFAD
Sbjct: 818 VCWDPELIPPETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILNDSLGIIANAHIVFAD 877
Query: 2154 QELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVI 2333
+E KA+++ C+ELA+LFSIAVDFPKTG+PA IPPHL+ KEYPDFM+K DK TY+S +VI
Sbjct: 878 KEPAKAKAEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPDKTTYKSNNVI 937
Query: 2334 GKLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLM 2513
GKLFRE++ I + I +FT EVA++SYDPD+E +GF DY+ DA Y+K +D+KLGNLM
Sbjct: 938 GKLFREIQGIPSRDGSITSFTLEVAKKSYDPDMEFDGFMDYVDDAFYHKTNYDYKLGNLM 997
Query: 2514 DYYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDD 2693
DYYGIK E+EIL GN+M++SKSF RRD ++I +AV L+KEAR+WFN+ ++ S D
Sbjct: 998 DYYGIKNESEILSGNIMRMSKSFNKRRDGDAINMAVRSLRKEARSWFNDDATGVDSGSVD 1057
Query: 2694 LYAKASAWYHVTYH 2735
YAKASAWY+VTYH
Sbjct: 1058 AYAKASAWYYVTYH 1071
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 1199 bits (3102), Expect = 0.0
Identities = 605/916 (66%), Positives = 716/916 (78%), Gaps = 5/916 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
+FL++Q+ GAPRIY++L +D ++F +TPDD W+R TDFT S IG SS++C
Sbjct: 164 QFLLLQLSGAPRIYKRL--------EDSCYSFFKETPDDQWVRTTDFT-PSWIGLSSSLC 214
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAFSHN---MDLVPIVRPTHGLELPYVIL 353
LE L E+F YYKE+ Q +L++G FS + + LVPIV G+ELPY IL
Sbjct: 215 LEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKIL 274
Query: 354 YKVNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQY 533
+K++SL+Q+GC G LN FF+L++P+ +A IE ALEKLY+LKECCY+PV+WL EQY
Sbjct: 275 FKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQY 334
Query: 534 IKYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIR 713
+Y +PSI+LDDGLVY+RRV +TP KVYF GPE+NVSNRVLR++ EDIDNF+R
Sbjct: 335 DEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLR 394
Query: 714 ISFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQL 893
+SFVDE++E++HSTDL PR + R T IY RILS L NG VIGDKKF+FLAFSSSQL
Sbjct: 395 VSFVDEEWEKIHSTDLLPRASTGNGVR-TDIYLRILSTLRNGFVIGDKKFEFLAFSSSQL 453
Query: 894 RENSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVI 1073
R+NS WMFAS GLTA IR WMG F +IRNVAKYAARLGQSF SS+ETL+V RHE+ VI
Sbjct: 454 RDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVI 513
Query: 1074 PDIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTS 1253
PD+ +G Y+FSDGIGKISADFAR+VA KC +Q + PS FQIRYGGYKGVVAVDP S
Sbjct: 514 PDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYT-PSCFQIRYGGYKGVVAVDPYS 572
Query: 1254 IKKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVD 1433
KLSLR SM KY S N KLDVL WSK+QPC+LNRQL+TLLSTLGVKD +FE+KQ EAVD
Sbjct: 573 SMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVD 632
Query: 1434 QLNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELR 1613
QL+ L D + AQEALE+MSPGEN N+LKEML CGY PDAEPFLSMMLQ FRA KLL+LR
Sbjct: 633 QLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLR 692
Query: 1614 NKTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQF--QGHLPFLIRNNTSEQRTF 1787
++RIF+PNGR+MMGCLDE+RTLEY QVF+Q + G +QF + H PF ++ S F
Sbjct: 693 TRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESH-PF--NDSGSTNCDF 749
Query: 1788 ILEGKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 1967
ILEG VVVAKNPCLHPGD+RVL+AVDV LHHMVDCVVFPQKGKRPHPNECSGSDLDGDI
Sbjct: 750 ILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 809
Query: 1968 YFVSWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVF 2147
YFV WDP+L+PP Q +PMDYTPAP +DHDV IEEV+EYF NY+VNDSLGIIANAH VF
Sbjct: 810 YFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVF 869
Query: 2148 ADQELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKH 2327
AD+E A SD C +LA+LFSIAVDFPKTGVPA+IP L KEYPDFM+K DKPTY S+
Sbjct: 870 ADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEK 929
Query: 2328 VIGKLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGN 2507
VIGKLF++VKD PQ S I FT +VAR+SYD D+ V GFEDYI +A YYK E+D KLGN
Sbjct: 930 VIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGN 989
Query: 2508 LMDYYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEE 2687
LMDYYGIKTEAEIL G +MK SK+F R+DA++IGVAV L+KEAR WF RS +
Sbjct: 990 LMDYYGIKTEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRRSDI----- 1044
Query: 2688 DDLYAKASAWYHVTYH 2735
DD+ AKASAWYHVTYH
Sbjct: 1045 DDMLAKASAWYHVTYH 1060
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 1190 bits (3079), Expect = 0.0
Identities = 599/915 (65%), Positives = 715/915 (78%), Gaps = 3/915 (0%)
Frame = +3
Query: 3 KFLIIQVIGAPRIYQKLLFSNGNILDDPILNYFMDTPDDMWIRATDFTRSSCIGQSSAVC 182
+FL+IQ+ GAPRIY++L ++ ++F +TPDD W+R TDF S IG SS++C
Sbjct: 164 QFLLIQLFGAPRIYKRL--------ENSCYSFFKETPDDQWVRTTDFP-PSWIGLSSSLC 214
Query: 183 LELPKSCELSGIRENFHYYKENEGQFLLESGSAF--SHNMDLVPIVRPTHGLELPYVILY 356
L+ + L E+F +Y E E L++G F S LVP V+P G+ +PY IL+
Sbjct: 215 LQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILF 274
Query: 357 KVNSLVQNGCLAGPTLNATFFRLINPQFIPLAHIERALEKLYHLKECCYEPVKWLKEQYI 536
K++SLVQ+GC+ GP LN FFRL++P+ +A IE ALEKLY++KECCY+PV+WL EQY
Sbjct: 275 KISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYD 334
Query: 537 KYRTSNHHFGTPSISLDDGLVYIRRVAITPSKVYFYGPEINVSNRVLRHFHEDIDNFIRI 716
Y +PSI+LDDGLVY+RRV +TP KVYF GPE+NVSNRVLR++ EDIDNF+R+
Sbjct: 335 GYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRV 394
Query: 717 SFVDEDFERMHSTDLSPRKPFKSEDRCTRIYRRILSVLSNGIVIGDKKFDFLAFSSSQLR 896
SFVDE++E+++STDL P+ S R T IY RILS L G VIGDKKF+FLAFSSSQLR
Sbjct: 395 SFVDEEWEKLYSTDLLPKASTGSGVR-TNIYERILSTLRKGFVIGDKKFEFLAFSSSQLR 453
Query: 897 ENSAWMFASGNGLTAASIREWMGDFHKIRNVAKYAARLGQSFSSSKETLTVRRHEIAVIP 1076
+NS WMFAS GLTA IR WMGDF +I+NVAKYAARLGQSF SS+ETL+V RHEI VIP
Sbjct: 454 DNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIP 513
Query: 1077 DIEIQTNGKKYVFSDGIGKISADFARKVAKKCAIQSSIPSAFQIRYGGYKGVVAVDPTSI 1256
D+++ +G YVFSDGIGKIS DFA +VA KC +Q + PSAFQIRYGGYKGVV VDP S
Sbjct: 514 DVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQYT-PSAFQIRYGGYKGVVGVDPDSS 570
Query: 1257 KKLSLRESMCKYVSQNEKLDVLSWSKFQPCFLNRQLITLLSTLGVKDHIFEKKQKEAVDQ 1436
KLSLR+SM KY S N KLDVL WSK+QPC+LNRQLITLLSTLGVKD + E+KQKEAVDQ
Sbjct: 571 MKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQ 630
Query: 1437 LNMTLTDPVSAQEALEVMSPGENVNVLKEMLMCGYKPDAEPFLSMMLQAFRAQKLLELRN 1616
L+ L D + AQEALE+MSPGEN N+LK ML CGYKPDAEPFLSMMLQ FRA KLL+LR
Sbjct: 631 LDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRT 690
Query: 1617 KTRIFVPNGRSMMGCLDETRTLEYSQVFIQVSCIGNKQFQGHL-PFLIRNNTSEQRTFIL 1793
++RIF+PNGR+MMGCLDE+RTLEY QVF+Q + G+ +F L PF N+ S FIL
Sbjct: 691 RSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPF--NNSRSTNSNFIL 748
Query: 1794 EGKVVVAKNPCLHPGDVRVLQAVDVRNLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYF 1973
+G VVVAKNPCLHPGD+RVL+AV+VR LHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYF
Sbjct: 749 KGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYF 808
Query: 1974 VSWDPELIPPCQIEPMDYTPAPPVVMDHDVKIEEVQEYFVNYMVNDSLGIIANAHTVFAD 2153
V WD ++IPP Q++PM+Y PAP + +DHDV IEEV+EYF NY+VNDSLGIIANAH VFAD
Sbjct: 809 VCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFAD 868
Query: 2154 QELRKAESDACVELARLFSIAVDFPKTGVPAQIPPHLYVKEYPDFMDKRDKPTYESKHVI 2333
+E A SD C +LA LFSIAVDFPKTGVPA+IP L KEYPDFMDK DK +Y S+ VI
Sbjct: 869 REPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVI 928
Query: 2334 GKLFREVKDIAPQMSCIKTFTKEVARRSYDPDLEVEGFEDYIGDACYYKGEFDFKLGNLM 2513
GKLFR+VKD APQ S I TFT++VARRSYD D+EV+GFEDYI +A YK E+D KLGNLM
Sbjct: 929 GKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLM 988
Query: 2514 DYYGIKTEAEILGGNVMKLSKSFTIRRDAESIGVAVNCLKKEARAWFNERSSVSGSEEDD 2693
DYYGIKTEAEIL G +MK SK+F R+DAE+I VAV L+KEARAWF R+ + DD
Sbjct: 989 DYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRNDI-----DD 1043
Query: 2694 LYAKASAWYHVTYHP 2738
+ KASAWYHVTYHP
Sbjct: 1044 MLPKASAWYHVTYHP 1058